Wall clock time and date at job start Tue Mar 31 2020 20:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00284 * 2 1 4 4 C 1.52999 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46692 * 175.00031 * 4 3 2 6 6 C 1.36733 * 127.13965 * 95.25829 * 5 4 3 7 7 C 1.50699 * 126.34403 * 359.97438 * 6 5 4 8 8 C 1.53007 * 109.47457 * 269.71538 * 7 6 5 9 9 C 1.50699 * 109.47457 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00183 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00269 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99688 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47339 * 90.00087 * 13 11 9 15 15 H 1.48503 * 109.46856 * 209.99848 * 13 11 9 16 16 H 1.48494 * 109.47147 * 329.99771 * 13 11 9 17 17 N 1.30293 * 107.30879 * 179.73176 * 6 5 4 18 18 N 1.28522 * 110.05140 * 0.25566 * 17 6 5 19 19 C 1.31213 * 109.86403 * 0.02562 * 18 17 6 20 20 N 1.38589 * 126.47630 * 180.02562 * 19 18 17 21 21 C 1.46898 * 110.99831 * 295.06155 * 20 19 18 22 22 C 1.52996 * 109.47264 * 195.67134 * 21 20 19 23 23 H 1.09001 * 109.46551 * 304.99969 * 22 21 20 24 24 C 1.52998 * 109.47243 * 185.00281 * 22 21 20 25 25 O 1.42902 * 109.47386 * 64.99740 * 22 21 20 26 26 C 1.46900 * 110.99818 * 59.01473 * 20 19 18 27 27 C 1.52996 * 117.49718 * 124.66980 * 26 20 19 28 28 C 1.52997 * 117.50193 * 56.04647 * 26 20 19 29 29 H 1.09002 * 109.47257 * 59.99877 * 1 2 3 30 30 H 1.08996 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46779 * 299.99973 * 1 2 3 32 32 H 1.08999 * 109.46593 * 60.00169 * 3 2 1 33 33 H 1.09003 * 109.46793 * 300.00600 * 3 2 1 34 34 H 1.08995 * 109.46810 * 55.00227 * 4 3 2 35 35 H 1.08996 * 109.46801 * 294.99663 * 4 3 2 36 36 H 1.09005 * 109.47205 * 149.72138 * 7 6 5 37 37 H 1.08999 * 109.47488 * 29.71553 * 7 6 5 38 38 H 1.09002 * 109.47270 * 300.00437 * 8 7 6 39 39 H 1.09005 * 109.46422 * 60.00121 * 8 7 6 40 40 H 0.97000 * 120.00235 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.46759 * 315.67082 * 21 20 19 42 42 H 1.09004 * 109.47174 * 75.66609 * 21 20 19 43 43 H 1.09000 * 109.47359 * 59.99471 * 24 22 21 44 44 H 1.09003 * 109.47216 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.46591 * 299.99423 * 24 22 21 46 46 H 0.96700 * 113.99644 * 60.00267 * 25 22 21 47 47 H 1.08997 * 115.54561 * 270.37376 * 26 20 19 48 48 H 1.09006 * 117.50033 * 359.97438 * 27 26 20 49 49 H 1.08997 * 117.49658 * 145.01840 * 27 26 20 50 50 H 1.08988 * 117.50342 * 214.97846 * 28 26 20 51 51 H 1.09006 * 117.49518 * 0.02562 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1308 2.5178 -0.1210 6 6 4.5655 3.3226 0.8953 7 6 4.5223 3.0040 2.3676 8 6 3.1994 3.4968 2.9576 9 6 3.1560 3.1777 4.4298 10 1 3.9889 2.6741 4.8979 11 6 2.0531 3.5285 5.1790 12 7 2.0154 3.2505 6.4638 13 14 0.6122 4.3989 4.3691 14 1 -0.3573 3.3912 3.8693 15 1 -0.0558 5.2788 5.3615 16 1 1.1043 5.2185 3.2329 17 7 5.0286 4.4138 0.3546 18 7 4.9121 4.3559 -0.9240 19 6 4.3634 3.2154 -1.2705 20 7 4.0803 2.7956 -2.5606 21 6 3.0607 3.6521 -3.1810 22 6 2.4929 2.9544 -4.4186 23 1 3.3077 2.6905 -5.0927 24 6 1.5229 3.8961 -5.1349 25 8 1.8004 1.7691 -4.0216 26 6 5.2993 2.7509 -3.3790 27 6 5.6385 1.4283 -4.0693 28 6 6.4622 1.8978 -2.8684 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 -0.8427 35 1 3.8637 0.7229 0.9305 36 1 5.3519 3.5003 2.8712 37 1 4.6040 1.9263 2.5087 38 1 3.1177 4.5746 2.8165 39 1 2.3698 3.0005 2.4540 40 1 1.2393 3.4969 6.9909 41 1 2.2577 3.8363 -2.4672 42 1 3.5117 4.6004 -3.4733 43 1 2.0512 4.8002 -5.4378 44 1 1.1181 3.3989 -6.0164 45 1 0.7081 4.1599 -4.4607 46 1 1.0607 1.9288 -3.4195 47 1 5.5449 3.6722 -3.9072 48 1 4.9574 0.5912 -3.9158 49 1 6.1074 1.4793 -5.0520 50 1 7.4728 2.2575 -3.0610 51 1 6.3225 1.3693 -1.9253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341471979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:56 Heat of formation + Delta-G solvation = 14.338891 kcal Electronic energy + Delta-G solvation = -31500.929218 eV Core-core repulsion = 27438.192970 eV Total energy + Delta-G solvation = -4062.736248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.80604 -39.18375 -38.06317 -37.25315 -35.18318 -34.66894 -33.82520 -32.00367 -31.28220 -29.80997 -28.83933 -26.51676 -26.09482 -25.36047 -23.64920 -22.85789 -22.39972 -21.95577 -21.47453 -20.05049 -19.87647 -17.59064 -17.17337 -16.78499 -16.57358 -16.23567 -16.10989 -16.02826 -15.51393 -15.36722 -14.93072 -14.60375 -14.38397 -14.10514 -13.85533 -13.44321 -13.20169 -13.11945 -12.75553 -12.65970 -12.55814 -12.37934 -12.25569 -11.77084 -11.69631 -11.60911 -11.45249 -11.29845 -11.16757 -11.12820 -10.91710 -10.57177 -10.46466 -10.42123 -10.28022 -10.13659 -9.97439 -9.87336 -9.74837 -9.33502 -8.88019 -8.63745 -8.59624 -6.13740 -4.13067 1.87104 2.21974 3.08853 3.20467 3.26284 3.30833 3.35018 3.58197 3.88521 4.16290 4.36030 4.36629 4.61358 4.64623 4.71982 4.76265 4.82166 4.82288 4.87335 4.96915 5.04137 5.14551 5.18998 5.23051 5.24684 5.32141 5.34884 5.36258 5.38487 5.46973 5.49672 5.58789 5.62987 5.63430 5.68236 5.77396 5.82526 5.97766 6.13922 6.19879 6.26091 6.43655 6.57562 6.76467 6.96215 7.06322 7.21923 7.31681 7.41284 7.64518 8.40457 8.89864 8.99351 9.47697 10.99285 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003834 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.764021 B = 7300.529627 C = 8101.320898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.462 5.462 6 C 0.213 3.787 7 C -0.025 4.025 8 C -0.002 4.002 9 C -0.522 4.522 10 H 0.077 0.923 11 C 0.073 3.927 12 N -0.898 5.898 13 Si 0.873 3.127 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.265 1.265 17 N -0.294 5.294 18 N -0.308 5.308 19 C 0.327 3.673 20 N -0.424 5.424 21 C 0.039 3.961 22 C 0.111 3.889 23 H 0.104 0.896 24 C -0.186 4.186 25 O -0.548 6.548 26 C 0.017 3.983 27 C -0.155 4.155 28 C -0.168 4.168 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.369 0.631 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -4.907 -23.946 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.156 5.156 6 C -0.054 4.054 7 C -0.065 4.065 8 C -0.041 4.041 9 C -0.560 4.560 10 H 0.095 0.905 11 C -0.129 4.129 12 N -0.536 5.536 13 Si 0.700 3.300 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.134 5.134 18 N -0.151 5.151 19 C -0.028 4.028 20 N -0.148 5.148 21 C -0.089 4.089 22 C 0.051 3.949 23 H 0.121 0.879 24 C -0.244 4.244 25 O -0.353 6.353 26 C -0.091 4.091 27 C -0.193 4.193 28 C -0.205 4.205 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.216 0.784 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.673 -4.455 -24.262 24.677 hybrid contribution -1.853 0.563 0.166 1.944 sum -1.180 -3.893 -24.095 24.436 Atomic orbital electron populations 1.22760 0.80315 1.02924 1.00236 1.87782 1.20227 1.26615 1.95527 1.22731 0.92774 0.85642 1.01450 1.21480 0.92523 0.80733 1.05773 1.46214 1.46852 1.16245 1.06312 1.25686 0.97642 0.87989 0.94055 1.20283 1.02889 1.01885 0.81395 1.19564 0.90678 0.96904 0.96936 1.20996 1.04675 1.39241 0.91111 0.90503 1.24941 0.98175 0.95154 0.94643 1.69888 1.30273 1.47302 1.06132 0.86880 0.82975 0.80287 0.79835 1.20388 1.21065 1.18999 1.74087 1.20445 1.18818 1.00053 1.74541 1.17826 1.15947 1.06825 1.22117 1.03760 0.89927 0.87031 1.58254 1.09416 1.50948 0.96229 1.22958 0.94168 0.94644 0.97112 1.21872 0.94128 0.85296 0.93581 0.87862 1.22489 1.00096 1.00251 1.01542 1.86627 1.48804 1.31588 1.68232 1.22393 0.90289 0.95659 1.00782 1.23160 1.02317 0.97369 0.96479 1.23004 0.95510 1.03026 0.98998 0.94126 0.89313 0.93620 0.91815 0.92965 0.87773 0.87526 0.88497 0.90454 0.95680 0.97458 0.92559 0.90538 0.91948 0.91423 0.91303 0.92230 0.78440 0.88011 0.87724 0.88428 0.88333 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.12 10.70 -35.23 -0.38 -5.49 16 3 C 0.05 0.70 6.26 37.16 0.23 0.93 16 4 C 0.12 1.59 6.44 -4.04 -0.03 1.57 16 5 N -0.46 -7.25 2.81 -114.09 -0.32 -7.57 16 6 C 0.21 3.94 7.32 -154.02 -1.13 2.81 16 7 C -0.02 -0.48 5.52 -27.88 -0.15 -0.63 16 8 C 0.00 -0.05 4.02 -27.88 -0.11 -0.17 16 9 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 10 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 13 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 17 N -0.29 -5.95 12.18 32.99 0.40 -5.55 16 18 N -0.31 -5.66 12.17 30.32 0.37 -5.29 16 19 C 0.33 5.04 5.69 -318.86 -1.81 3.22 16 20 N -0.42 -5.09 4.58 -166.95 -0.76 -5.85 16 21 C 0.04 0.40 4.54 -3.83 -0.02 0.38 16 22 C 0.11 0.91 3.64 -26.73 -0.10 0.82 16 23 H 0.10 0.85 7.29 -51.93 -0.38 0.48 16 24 C -0.19 -1.22 9.53 37.16 0.35 -0.86 16 25 O -0.55 -5.18 13.29 -35.23 -0.47 -5.65 16 26 C 0.02 0.18 4.35 -67.72 -0.29 -0.11 16 27 C -0.16 -1.37 10.28 -26.73 -0.27 -1.64 16 28 C -0.17 -1.77 9.85 -26.73 -0.26 -2.03 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 1.00 6.86 -51.93 -0.36 0.65 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.11 1.41 7.10 -51.93 -0.37 1.04 16 36 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.08 1.36 7.17 -51.93 -0.37 0.98 16 38 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 39 H 0.01 0.16 6.28 -51.93 -0.33 -0.16 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 41 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 42 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.37 2.66 9.05 45.56 0.41 3.08 16 47 H 0.10 1.05 7.95 -51.93 -0.41 0.63 16 48 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.95 8.14 -51.94 -0.42 0.52 16 51 H 0.09 1.13 7.98 -51.93 -0.41 0.72 16 LS Contribution 418.29 15.07 6.30 6.30 Total: -1.00 -32.88 418.29 -9.74 -42.62 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.08 Total: 2.85 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.91 Total: -6.81 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.46 Total: -50.38 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.85 Total: -11.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.88 -9.74 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341471979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.955 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds