Wall clock time and date at job start Tue Mar 31 2020 20:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00284 * 2 1 4 4 C 1.52999 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46692 * 175.00031 * 4 3 2 6 6 C 1.36733 * 127.13965 * 95.25829 * 5 4 3 7 7 C 1.50699 * 126.34403 * 359.97438 * 6 5 4 8 8 C 1.53007 * 109.47457 * 269.71538 * 7 6 5 9 9 C 1.50699 * 109.47457 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00183 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00269 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99688 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47339 * 90.00087 * 13 11 9 15 15 H 1.48503 * 109.46856 * 209.99848 * 13 11 9 16 16 H 1.48494 * 109.47147 * 329.99771 * 13 11 9 17 17 N 1.30293 * 107.30879 * 179.73176 * 6 5 4 18 18 N 1.28522 * 110.05140 * 0.25566 * 17 6 5 19 19 C 1.31213 * 109.86403 * 0.02562 * 18 17 6 20 20 N 1.38589 * 126.47630 * 180.02562 * 19 18 17 21 21 C 1.46898 * 110.99831 * 295.06155 * 20 19 18 22 22 C 1.52996 * 109.47264 * 195.67134 * 21 20 19 23 23 H 1.09001 * 109.46551 * 304.99969 * 22 21 20 24 24 C 1.52998 * 109.47243 * 185.00281 * 22 21 20 25 25 O 1.42902 * 109.47386 * 64.99740 * 22 21 20 26 26 C 1.46900 * 110.99818 * 59.01473 * 20 19 18 27 27 C 1.52996 * 117.49718 * 124.66980 * 26 20 19 28 28 C 1.52997 * 117.50193 * 56.04647 * 26 20 19 29 29 H 1.09002 * 109.47257 * 59.99877 * 1 2 3 30 30 H 1.08996 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46779 * 299.99973 * 1 2 3 32 32 H 1.08999 * 109.46593 * 60.00169 * 3 2 1 33 33 H 1.09003 * 109.46793 * 300.00600 * 3 2 1 34 34 H 1.08995 * 109.46810 * 55.00227 * 4 3 2 35 35 H 1.08996 * 109.46801 * 294.99663 * 4 3 2 36 36 H 1.09005 * 109.47205 * 149.72138 * 7 6 5 37 37 H 1.08999 * 109.47488 * 29.71553 * 7 6 5 38 38 H 1.09002 * 109.47270 * 300.00437 * 8 7 6 39 39 H 1.09005 * 109.46422 * 60.00121 * 8 7 6 40 40 H 0.97000 * 120.00235 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.46759 * 315.67082 * 21 20 19 42 42 H 1.09004 * 109.47174 * 75.66609 * 21 20 19 43 43 H 1.09000 * 109.47359 * 59.99471 * 24 22 21 44 44 H 1.09003 * 109.47216 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.46591 * 299.99423 * 24 22 21 46 46 H 0.96700 * 113.99644 * 60.00267 * 25 22 21 47 47 H 1.08997 * 115.54561 * 270.37376 * 26 20 19 48 48 H 1.09006 * 117.50033 * 359.97438 * 27 26 20 49 49 H 1.08997 * 117.49658 * 145.01840 * 27 26 20 50 50 H 1.08988 * 117.50342 * 214.97846 * 28 26 20 51 51 H 1.09006 * 117.49518 * 0.02562 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1308 2.5178 -0.1210 6 6 4.5655 3.3226 0.8953 7 6 4.5223 3.0040 2.3676 8 6 3.1994 3.4968 2.9576 9 6 3.1560 3.1777 4.4298 10 1 3.9889 2.6741 4.8979 11 6 2.0531 3.5285 5.1790 12 7 2.0154 3.2505 6.4638 13 14 0.6122 4.3989 4.3691 14 1 -0.3573 3.3912 3.8693 15 1 -0.0558 5.2788 5.3615 16 1 1.1043 5.2185 3.2329 17 7 5.0286 4.4138 0.3546 18 7 4.9121 4.3559 -0.9240 19 6 4.3634 3.2154 -1.2705 20 7 4.0803 2.7956 -2.5606 21 6 3.0607 3.6521 -3.1810 22 6 2.4929 2.9544 -4.4186 23 1 3.3077 2.6905 -5.0927 24 6 1.5229 3.8961 -5.1349 25 8 1.8004 1.7691 -4.0216 26 6 5.2993 2.7509 -3.3790 27 6 5.6385 1.4283 -4.0693 28 6 6.4622 1.8978 -2.8684 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5686 -0.8427 35 1 3.8637 0.7229 0.9305 36 1 5.3519 3.5003 2.8712 37 1 4.6040 1.9263 2.5087 38 1 3.1177 4.5746 2.8165 39 1 2.3698 3.0005 2.4540 40 1 1.2393 3.4969 6.9909 41 1 2.2577 3.8363 -2.4672 42 1 3.5117 4.6004 -3.4733 43 1 2.0512 4.8002 -5.4378 44 1 1.1181 3.3989 -6.0164 45 1 0.7081 4.1599 -4.4607 46 1 1.0607 1.9288 -3.4195 47 1 5.5449 3.6722 -3.9072 48 1 4.9574 0.5912 -3.9158 49 1 6.1074 1.4793 -5.0520 50 1 7.4728 2.2575 -3.0610 51 1 6.3225 1.3693 -1.9253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341471979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:55 Heat of formation + Delta-G solvation = -7.295249 kcal Electronic energy + Delta-G solvation = -31501.867345 eV Core-core repulsion = 27438.192970 eV Total energy + Delta-G solvation = -4063.674375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.13351 -40.04538 -39.08064 -37.97475 -36.56182 -35.95516 -35.19395 -33.80064 -32.12549 -30.97509 -30.25554 -27.62822 -27.23260 -26.61645 -24.75754 -23.85246 -23.45542 -23.08529 -22.62362 -21.37047 -21.08178 -19.11915 -18.48980 -18.01420 -17.58270 -17.20911 -17.11530 -16.87377 -16.58613 -16.34654 -16.29860 -15.83065 -15.59689 -15.19977 -15.12367 -14.86340 -14.69518 -14.35938 -13.95249 -13.54191 -13.43679 -13.41897 -13.21497 -13.03515 -12.82140 -12.77402 -12.69959 -12.44088 -12.36773 -12.24842 -12.02472 -11.91506 -11.81585 -11.75872 -11.46538 -11.40781 -11.31893 -11.24781 -11.04420 -10.83247 -10.72477 -10.03975 -9.84038 -8.32128 -6.36021 0.58859 1.02841 1.27258 1.33103 1.42927 1.69010 2.28917 2.30949 2.78498 2.86331 3.02854 3.37892 3.52397 3.53200 3.60507 3.78827 3.84832 3.91527 3.95274 4.03589 4.11058 4.14590 4.16595 4.24191 4.33156 4.41358 4.45589 4.48765 4.51854 4.56368 4.58104 4.67401 4.70094 4.71980 4.80129 4.82889 4.86850 4.98233 5.01508 5.13316 5.22940 5.23589 5.26202 5.38154 5.43500 5.59167 5.71168 5.99822 6.14296 6.22276 6.70861 6.83984 7.28283 7.62300 8.84054 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003834 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.764021 B = 7300.529627 C = 8101.320898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.060 3.940 4 C 0.118 3.882 5 N -0.457 5.457 6 C 0.202 3.798 7 C -0.014 4.014 8 C 0.008 3.992 9 C -0.527 4.527 10 H 0.047 0.953 11 C 0.017 3.983 12 N -0.942 5.942 13 Si 0.935 3.065 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.261 1.261 17 N -0.324 5.324 18 N -0.337 5.337 19 C 0.351 3.649 20 N -0.420 5.420 21 C 0.039 3.961 22 C 0.122 3.878 23 H 0.107 0.893 24 C -0.180 4.180 25 O -0.562 6.562 26 C 0.001 3.999 27 C -0.125 4.125 28 C -0.180 4.180 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.011 0.989 39 H 0.017 0.983 40 H 0.267 0.733 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.378 0.622 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.124 0.876 50 H 0.106 0.894 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -5.545 -27.212 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.005 4.005 5 N -0.151 5.151 6 C -0.066 4.066 7 C -0.053 4.053 8 C -0.031 4.031 9 C -0.565 4.565 10 H 0.066 0.934 11 C -0.181 4.181 12 N -0.583 5.583 13 Si 0.759 3.241 14 H -0.185 1.185 15 H -0.207 1.207 16 H -0.185 1.185 17 N -0.164 5.164 18 N -0.180 5.180 19 C -0.006 4.006 20 N -0.145 5.145 21 C -0.089 4.089 22 C 0.062 3.938 23 H 0.125 0.875 24 C -0.238 4.238 25 O -0.367 6.367 26 C -0.107 4.107 27 C -0.163 4.163 28 C -0.218 4.218 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.226 0.774 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.142 0.858 50 H 0.124 0.876 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.469 -5.107 -27.545 28.018 hybrid contribution -1.455 0.685 1.137 1.969 sum -1.923 -4.422 -26.408 26.844 Atomic orbital electron populations 1.22981 0.78858 1.04387 1.00719 1.87766 1.21837 1.26211 1.95568 1.22570 0.92570 0.85850 1.00765 1.21633 0.92654 0.79675 1.06533 1.46255 1.46389 1.16649 1.05795 1.25267 0.98883 0.88480 0.93945 1.20004 1.00607 1.02606 0.82125 1.19379 0.93123 0.96055 0.94538 1.21284 1.03628 1.38290 0.93272 0.93440 1.25780 1.01182 0.96044 0.95101 1.70022 1.31456 1.49041 1.07756 0.85883 0.79757 0.79497 0.78923 1.18532 1.20735 1.18500 1.73996 1.21358 1.19861 1.01186 1.74484 1.19742 1.17693 1.06085 1.22502 1.01080 0.88752 0.88242 1.58582 1.10347 1.50714 0.94904 1.23065 0.93349 0.94753 0.97690 1.21819 0.94467 0.85127 0.92384 0.87511 1.22439 0.99743 1.00120 1.01540 1.86601 1.49317 1.32231 1.68596 1.22570 0.89840 0.97003 1.01270 1.23186 1.00739 0.95525 0.96847 1.23010 0.96087 1.03506 0.99168 0.92068 0.87458 0.94693 0.94241 0.91825 0.86216 0.87456 0.89111 0.88936 0.97086 0.96488 0.92346 0.91502 0.92126 0.90773 0.90662 0.92046 0.77396 0.87432 0.88129 0.85788 0.87567 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -9.82 10.70 -148.98 -1.59 -11.41 16 3 C 0.06 1.55 6.26 71.98 0.45 2.00 16 4 C 0.12 3.01 6.44 86.38 0.56 3.57 16 5 N -0.46 -14.02 2.81 -514.87 -1.45 -15.46 16 6 C 0.20 7.49 7.32 137.64 1.01 8.50 16 7 C -0.01 -0.53 5.52 29.85 0.16 -0.37 16 8 C 0.01 0.35 4.02 29.85 0.12 0.47 16 9 C -0.53 -29.29 9.66 25.60 0.25 -29.04 16 10 H 0.05 2.85 7.99 -2.91 -0.02 2.82 16 11 C 0.02 0.97 5.47 84.65 0.46 1.43 16 12 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 13 Si 0.94 43.77 27.47 68.60 1.88 45.65 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 17 N -0.32 -13.20 12.18 -49.54 -0.60 -13.80 16 18 N -0.34 -12.29 12.17 -58.00 -0.71 -13.00 16 19 C 0.35 10.46 5.69 260.11 1.48 11.94 16 20 N -0.42 -9.35 4.58 -682.10 -3.12 -12.47 16 21 C 0.04 0.73 4.54 86.30 0.39 1.12 16 22 C 0.12 1.68 3.64 30.59 0.11 1.79 16 23 H 0.11 1.43 7.29 -2.39 -0.02 1.41 16 24 C -0.18 -1.87 9.53 71.98 0.69 -1.19 16 25 O -0.56 -9.02 13.29 -148.98 -1.98 -11.00 16 26 C 0.00 0.02 4.35 44.91 0.20 0.21 16 27 C -0.13 -1.83 10.28 30.59 0.31 -1.52 16 28 C -0.18 -3.50 9.85 30.59 0.30 -3.20 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.04 1.21 6.86 -2.39 -0.02 1.19 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.11 2.74 7.10 -2.39 -0.02 2.73 16 36 H 0.09 3.61 8.14 -2.38 -0.02 3.59 16 37 H 0.09 3.26 7.17 -2.39 -0.02 3.24 16 38 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 39 H 0.02 0.75 6.28 -2.38 -0.01 0.74 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.07 1.39 7.97 -2.39 -0.02 1.37 16 42 H 0.06 1.18 7.93 -2.39 -0.02 1.16 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 46 H 0.38 4.43 9.05 -74.06 -0.67 3.76 16 47 H 0.11 1.98 7.95 -2.39 -0.02 1.96 16 48 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.07 1.73 7.98 -2.38 -0.02 1.71 16 Total: -1.00 -71.59 418.29 0.66 -70.93 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.19 Total: 20.46 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 7.74 Total: -2.53 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -5.58 Total: -112.10 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -3.57 Total: -22.42 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -71.59 0.66 -70.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341471979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.636 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds