Wall clock time and date at job start Tue Mar 31 2020 21:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 119.99975 * 2 1 4 4 C 1.50701 * 119.99857 * 180.02562 * 2 1 3 5 5 N 1.46508 * 109.47291 * 94.99729 * 4 2 1 6 6 C 1.36737 * 127.13599 * 274.32917 * 5 4 2 7 7 C 1.50693 * 126.34904 * 0.03730 * 6 5 4 8 8 H 1.08998 * 109.47167 * 0.24813 * 7 6 5 9 9 C 1.53001 * 109.47086 * 240.24876 * 7 6 5 10 10 C 1.53000 * 109.47534 * 120.24893 * 7 6 5 11 11 O 1.42898 * 109.47153 * 184.99634 * 10 7 6 12 12 N 1.30292 * 107.30209 * 180.22604 * 6 5 4 13 13 N 1.28530 * 110.05594 * 359.77155 * 12 6 5 14 14 C 1.31214 * 109.86113 * 0.02562 * 13 12 6 15 15 N 1.38579 * 126.47598 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00013 * 251.72454 * 15 14 13 17 17 C 1.50708 * 109.47171 * 67.70279 * 16 15 14 18 18 H 1.08003 * 119.99823 * 3.72024 * 17 16 15 19 19 C 1.37872 * 119.99983 * 183.72826 * 17 16 15 20 20 N 1.31512 * 120.00399 * 5.06937 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 185.07409 * 19 17 16 22 22 H 1.48495 * 109.47425 * 94.99034 * 21 19 17 23 23 H 1.48498 * 109.47153 * 214.99477 * 21 19 17 24 24 H 1.48504 * 109.46854 * 334.98957 * 21 19 17 25 25 C 1.46894 * 110.99746 * 15.67932 * 15 14 13 26 26 C 1.53002 * 109.46815 * 163.47899 * 25 15 14 27 27 O 1.42894 * 109.47737 * 67.62697 * 26 25 15 28 28 C 1.42893 * 114.00632 * 175.03560 * 27 26 25 29 29 H 1.07995 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00033 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47399 * 270.00200 * 3 2 1 32 32 H 1.08997 * 109.47436 * 30.00703 * 3 2 1 33 33 H 1.09006 * 109.47181 * 150.00588 * 3 2 1 34 34 H 1.09003 * 109.47363 * 334.99760 * 4 2 1 35 35 H 1.08995 * 109.47252 * 214.99351 * 4 2 1 36 36 H 1.09001 * 109.47411 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.47066 * 299.99999 * 9 7 6 38 38 H 1.09008 * 109.47091 * 59.99816 * 9 7 6 39 39 H 1.08997 * 109.47212 * 305.00202 * 10 7 6 40 40 H 1.09002 * 109.47220 * 64.99848 * 10 7 6 41 41 H 0.96701 * 113.99609 * 179.97438 * 11 10 7 42 42 H 1.08997 * 109.47446 * 187.69796 * 16 15 14 43 43 H 1.09002 * 109.47395 * 307.70406 * 16 15 14 44 44 H 0.96996 * 120.00350 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47253 * 43.47806 * 25 15 14 46 46 H 1.08996 * 109.47474 * 283.47466 * 25 15 14 47 47 H 1.09004 * 109.47145 * 307.61838 * 26 25 15 48 48 H 1.09011 * 109.47056 * 187.62672 * 26 25 15 49 49 H 1.08996 * 109.47419 * 184.94313 * 28 27 26 50 50 H 1.09007 * 109.47374 * 304.94408 * 28 27 26 51 51 H 1.09000 * 109.47098 * 64.93914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3768 6 6 1.6337 -2.3444 -2.2744 7 6 0.2400 -2.8646 -2.0343 8 1 -0.0710 -2.6155 -1.0197 9 6 0.2248 -4.3840 -2.2138 10 6 -0.7234 -2.2232 -3.0350 11 8 -2.0609 -2.6262 -2.7339 12 7 2.3222 -2.4598 -3.3745 13 7 3.4718 -1.9019 -3.2357 14 6 3.5794 -1.3969 -2.0294 15 7 4.6738 -0.7209 -1.5139 16 6 5.3767 -1.5396 -0.5172 17 6 6.0182 -2.7206 -1.1994 18 1 5.9652 -2.8179 -2.2737 19 6 6.6724 -3.6767 -0.4519 20 7 6.6520 -3.6122 0.8614 21 14 7.5882 -5.0636 -1.3048 22 1 9.0212 -4.6996 -1.4425 23 1 7.4680 -6.3052 -0.4991 24 1 7.0030 -5.2887 -2.6511 25 6 5.5850 -0.2993 -2.5862 26 6 6.5385 0.7720 -2.0533 27 8 7.4185 0.1899 -1.0896 28 6 8.4265 1.0816 -0.6094 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4386 -2.0857 0.4334 35 1 2.9742 -1.1992 0.5888 36 1 -0.7832 -4.7604 -2.0397 37 1 0.5358 -4.6331 -3.2284 38 1 0.9111 -4.8410 -1.5009 39 1 -0.6471 -1.1380 -2.9683 40 1 -0.4657 -2.5442 -4.0443 41 1 -2.7267 -2.2559 -3.3295 42 1 6.1456 -0.9394 -0.0309 43 1 4.6656 -1.8935 0.2292 44 1 7.1126 -4.2847 1.3873 45 1 5.0066 0.1089 -3.4150 46 1 6.1603 -1.1578 -2.9326 47 1 5.9628 1.5701 -1.5844 48 1 7.1223 1.1815 -2.8779 49 1 9.1054 0.5413 0.0502 50 1 8.9853 1.4867 -1.4532 51 1 7.9577 1.8974 -0.0591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342682901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:28 Heat of formation + Delta-G solvation = 13.297862 kcal Electronic energy + Delta-G solvation = -31997.095098 eV Core-core repulsion = 27934.313708 eV Total energy + Delta-G solvation = -4062.781390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35027 -37.99285 -37.39712 -36.64783 -36.08362 -33.82054 -32.90716 -32.45491 -29.55418 -28.34499 -27.39629 -26.87048 -26.29050 -26.18131 -25.48835 -23.25966 -22.41933 -21.76117 -20.20404 -19.27562 -18.55706 -17.61890 -16.86102 -16.34892 -16.10440 -15.90242 -15.55659 -15.12121 -14.82194 -14.60161 -14.45255 -14.29930 -14.21234 -14.00045 -13.74325 -13.30620 -13.04553 -12.62710 -12.55897 -12.08966 -11.90296 -11.81319 -11.75627 -11.64685 -11.51932 -11.33483 -11.14699 -11.03428 -10.94411 -10.84373 -10.79355 -10.72018 -10.36696 -10.03671 -9.96067 -9.91871 -9.57730 -9.45259 -9.21971 -9.06063 -8.62326 -8.35259 -7.36830 -6.02069 -4.04423 1.93622 2.43588 3.02704 3.33209 3.39460 3.46862 3.57233 4.14300 4.38030 4.48052 4.64776 4.70901 4.74572 4.75643 4.93650 5.13994 5.23601 5.33556 5.37388 5.53669 5.56978 5.63682 5.65161 5.66459 5.69461 5.75218 5.79408 5.82517 5.85260 5.88589 5.94735 5.96812 6.04851 6.06980 6.10654 6.18361 6.32788 6.45646 6.51278 6.63052 6.76620 6.81195 7.05735 7.34334 7.50415 7.57572 7.62020 7.77826 7.94489 8.21038 8.23291 8.99808 9.48782 9.60219 11.05730 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.004618 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.945106 B = 6061.969586 C = 7392.516803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.134 4.134 3 C -0.112 4.112 4 C 0.143 3.857 5 N -0.467 5.467 6 C 0.154 3.846 7 C 0.010 3.990 8 H 0.085 0.915 9 C -0.137 4.137 10 C 0.090 3.910 11 O -0.572 6.572 12 N -0.281 5.281 13 N -0.337 5.337 14 C 0.414 3.586 15 N -0.462 5.462 16 C 0.188 3.812 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.072 3.928 26 C 0.070 3.930 27 O -0.354 6.354 28 C 0.030 3.970 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.379 0.621 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.260 0.740 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.080 0.920 50 H 0.031 0.969 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 9.969 -1.662 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.135 4.135 3 C -0.169 4.169 4 C 0.020 3.980 5 N -0.161 5.161 6 C -0.113 4.113 7 C -0.011 4.011 8 H 0.104 0.896 9 C -0.195 4.195 10 C 0.012 3.988 11 O -0.378 6.378 12 N -0.121 5.121 13 N -0.181 5.181 14 C 0.058 3.942 15 N -0.187 5.187 16 C 0.065 3.935 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.198 1.198 25 C -0.055 4.055 26 C -0.007 4.007 27 O -0.272 6.272 28 C -0.067 4.067 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.226 0.774 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.049 0.951 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.994 9.411 -2.115 14.625 hybrid contribution 0.456 -0.506 0.251 0.726 sum -10.538 8.905 -1.864 13.922 Atomic orbital electron populations 1.23814 0.95024 1.02126 1.00696 1.21965 0.95391 0.95881 1.00266 1.20787 1.00374 0.93373 1.02371 1.20889 1.02048 0.94379 0.80673 1.45933 1.12894 1.44488 1.12755 1.23961 0.96830 1.02488 0.88056 1.19218 0.85281 0.96553 1.00005 0.89643 1.21743 1.02067 0.92628 1.03106 1.22066 0.81447 0.97340 0.97963 1.86407 1.16573 1.75349 1.59445 1.73769 1.00373 1.17488 1.20439 1.74624 1.11910 1.15387 1.16187 1.22655 0.87877 0.94905 0.88784 1.59500 1.06379 1.37686 1.15091 1.20218 0.93444 0.91201 0.88600 1.21615 1.34866 1.06823 0.94011 0.91764 1.24800 0.96193 0.97575 0.94627 1.69928 1.43304 1.35694 1.04384 0.86651 0.80396 0.81658 0.79841 1.20597 1.21441 1.19811 1.21982 0.93135 0.98763 0.91650 1.22489 0.91396 0.95586 0.91241 1.88336 1.43193 1.36710 1.58940 1.22663 0.91660 0.94300 0.98054 0.88055 0.88256 0.91498 0.92173 0.90882 0.89137 0.86971 0.91329 0.91535 0.92465 0.93690 0.92279 0.77382 0.90767 0.95628 0.93035 0.90527 0.90180 0.93575 0.93544 0.90123 0.95080 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 13.86 29.01 0.40 -1.56 16 2 C -0.13 -1.73 5.64 -101.07 -0.57 -2.30 16 3 C -0.11 -1.38 10.03 36.00 0.36 -1.02 16 4 C 0.14 2.23 5.82 -5.19 -0.03 2.20 16 5 N -0.47 -8.71 2.79 -115.37 -0.32 -9.03 16 6 C 0.15 2.81 6.58 -154.02 -1.01 1.80 16 7 C 0.01 0.15 3.00 -91.77 -0.28 -0.13 16 8 H 0.09 1.13 5.61 -51.93 -0.29 0.84 16 9 C -0.14 -1.93 9.07 37.16 0.34 -1.60 16 10 C 0.09 1.10 6.41 37.16 0.24 1.34 16 11 O -0.57 -5.95 13.20 -35.23 -0.46 -6.42 16 12 N -0.28 -5.97 12.18 32.99 0.40 -5.57 16 13 N -0.34 -7.72 11.28 30.31 0.34 -7.38 16 14 C 0.41 8.83 6.17 -318.88 -1.97 6.87 16 15 N -0.46 -9.62 4.68 -175.88 -0.82 -10.44 16 16 C 0.19 4.60 4.43 -4.97 -0.02 4.58 16 17 C -0.53 -14.69 7.73 -34.44 -0.27 -14.95 16 18 H 0.06 1.86 6.28 -52.48 -0.33 1.53 16 19 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.27 -7.04 7.11 56.52 0.40 -6.63 16 25 C 0.07 1.41 4.81 -3.83 -0.02 1.39 16 26 C 0.07 1.17 6.22 37.16 0.23 1.40 16 27 O -0.35 -6.84 7.80 -35.23 -0.27 -7.11 16 28 C 0.03 0.45 11.01 101.05 1.11 1.56 16 29 H 0.10 0.96 8.04 -52.49 -0.42 0.54 16 30 H 0.10 1.05 6.57 -52.48 -0.35 0.71 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.09 1.26 7.28 -51.93 -0.38 0.89 16 35 H 0.11 1.94 6.04 -51.93 -0.31 1.63 16 36 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.38 2.19 9.12 45.56 0.42 2.61 16 42 H 0.07 1.91 5.64 -51.93 -0.29 1.62 16 43 H 0.03 0.67 6.09 -51.93 -0.32 0.35 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.08 1.40 7.75 -51.93 -0.40 1.00 16 46 H 0.08 1.81 5.83 -51.93 -0.30 1.51 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.66 8.12 -51.92 -0.42 0.24 16 49 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.03 0.39 8.12 -51.92 -0.42 -0.03 16 51 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -33.28 410.21 -8.40 -41.69 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.58 Total: 4.42 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.58 Total: 1.45 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.33 Total: -57.55 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.74 Total: -13.53 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.28 -8.40 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342682901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.986 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds