Wall clock time and date at job start Tue Mar 31 2020 21:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 119.99975 * 2 1 4 4 C 1.50701 * 119.99857 * 180.02562 * 2 1 3 5 5 N 1.46508 * 109.47291 * 94.99729 * 4 2 1 6 6 C 1.36737 * 127.13599 * 274.32917 * 5 4 2 7 7 C 1.50693 * 126.34904 * 0.03730 * 6 5 4 8 8 H 1.08998 * 109.47167 * 0.24813 * 7 6 5 9 9 C 1.53001 * 109.47086 * 240.24876 * 7 6 5 10 10 C 1.53000 * 109.47534 * 120.24893 * 7 6 5 11 11 O 1.42898 * 109.47153 * 184.99634 * 10 7 6 12 12 N 1.30292 * 107.30209 * 180.22604 * 6 5 4 13 13 N 1.28530 * 110.05594 * 359.77155 * 12 6 5 14 14 C 1.31214 * 109.86113 * 0.02562 * 13 12 6 15 15 N 1.38579 * 126.47598 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00013 * 251.72454 * 15 14 13 17 17 C 1.50708 * 109.47171 * 67.70279 * 16 15 14 18 18 H 1.08003 * 119.99823 * 3.72024 * 17 16 15 19 19 C 1.37872 * 119.99983 * 183.72826 * 17 16 15 20 20 N 1.31512 * 120.00399 * 5.06937 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 185.07409 * 19 17 16 22 22 H 1.48495 * 109.47425 * 94.99034 * 21 19 17 23 23 H 1.48498 * 109.47153 * 214.99477 * 21 19 17 24 24 H 1.48504 * 109.46854 * 334.98957 * 21 19 17 25 25 C 1.46894 * 110.99746 * 15.67932 * 15 14 13 26 26 C 1.53002 * 109.46815 * 163.47899 * 25 15 14 27 27 O 1.42894 * 109.47737 * 67.62697 * 26 25 15 28 28 C 1.42893 * 114.00632 * 175.03560 * 27 26 25 29 29 H 1.07995 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00033 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47399 * 270.00200 * 3 2 1 32 32 H 1.08997 * 109.47436 * 30.00703 * 3 2 1 33 33 H 1.09006 * 109.47181 * 150.00588 * 3 2 1 34 34 H 1.09003 * 109.47363 * 334.99760 * 4 2 1 35 35 H 1.08995 * 109.47252 * 214.99351 * 4 2 1 36 36 H 1.09001 * 109.47411 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.47066 * 299.99999 * 9 7 6 38 38 H 1.09008 * 109.47091 * 59.99816 * 9 7 6 39 39 H 1.08997 * 109.47212 * 305.00202 * 10 7 6 40 40 H 1.09002 * 109.47220 * 64.99848 * 10 7 6 41 41 H 0.96701 * 113.99609 * 179.97438 * 11 10 7 42 42 H 1.08997 * 109.47446 * 187.69796 * 16 15 14 43 43 H 1.09002 * 109.47395 * 307.70406 * 16 15 14 44 44 H 0.96996 * 120.00350 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47253 * 43.47806 * 25 15 14 46 46 H 1.08996 * 109.47474 * 283.47466 * 25 15 14 47 47 H 1.09004 * 109.47145 * 307.61838 * 26 25 15 48 48 H 1.09011 * 109.47056 * 187.62672 * 26 25 15 49 49 H 1.08996 * 109.47419 * 184.94313 * 28 27 26 50 50 H 1.09007 * 109.47374 * 304.94408 * 28 27 26 51 51 H 1.09000 * 109.47098 * 64.93914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6673 -1.3768 6 6 1.6337 -2.3444 -2.2744 7 6 0.2400 -2.8646 -2.0343 8 1 -0.0710 -2.6155 -1.0197 9 6 0.2248 -4.3840 -2.2138 10 6 -0.7234 -2.2232 -3.0350 11 8 -2.0609 -2.6262 -2.7339 12 7 2.3222 -2.4598 -3.3745 13 7 3.4718 -1.9019 -3.2357 14 6 3.5794 -1.3969 -2.0294 15 7 4.6738 -0.7209 -1.5139 16 6 5.3767 -1.5396 -0.5172 17 6 6.0182 -2.7206 -1.1994 18 1 5.9652 -2.8179 -2.2737 19 6 6.6724 -3.6767 -0.4519 20 7 6.6520 -3.6122 0.8614 21 14 7.5882 -5.0636 -1.3048 22 1 9.0212 -4.6996 -1.4425 23 1 7.4680 -6.3052 -0.4991 24 1 7.0030 -5.2887 -2.6511 25 6 5.5850 -0.2993 -2.5862 26 6 6.5385 0.7720 -2.0533 27 8 7.4185 0.1899 -1.0896 28 6 8.4265 1.0816 -0.6094 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4386 -2.0857 0.4334 35 1 2.9742 -1.1992 0.5888 36 1 -0.7832 -4.7604 -2.0397 37 1 0.5358 -4.6331 -3.2284 38 1 0.9111 -4.8410 -1.5009 39 1 -0.6471 -1.1380 -2.9683 40 1 -0.4657 -2.5442 -4.0443 41 1 -2.7267 -2.2559 -3.3295 42 1 6.1456 -0.9394 -0.0309 43 1 4.6656 -1.8935 0.2292 44 1 7.1126 -4.2847 1.3873 45 1 5.0066 0.1089 -3.4150 46 1 6.1603 -1.1578 -2.9326 47 1 5.9628 1.5701 -1.5844 48 1 7.1223 1.1815 -2.8779 49 1 9.1054 0.5413 0.0502 50 1 8.9853 1.4867 -1.4532 51 1 7.9577 1.8974 -0.0591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342682901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:27 Heat of formation + Delta-G solvation = -8.887687 kcal Electronic energy + Delta-G solvation = -31998.057136 eV Core-core repulsion = 27934.313708 eV Total energy + Delta-G solvation = -4063.743428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.89439 -39.49644 -38.40188 -37.86333 -37.50832 -35.00335 -34.56526 -34.17220 -31.00637 -30.10190 -28.52552 -28.18411 -27.71273 -27.25968 -26.95681 -24.85434 -24.03134 -23.19842 -21.70129 -20.68859 -19.67458 -18.78106 -18.58284 -17.85025 -17.50241 -17.37619 -16.95091 -16.66566 -16.20278 -15.95091 -15.72330 -15.67429 -15.44260 -15.22061 -14.92123 -14.77855 -14.52604 -14.05145 -13.60932 -13.57196 -13.29741 -13.13046 -13.05976 -12.92526 -12.84887 -12.73944 -12.71218 -12.58733 -12.45612 -12.39689 -12.23843 -12.13242 -12.00427 -11.84094 -11.66039 -11.23848 -10.92906 -10.87541 -10.61643 -10.34106 -10.28776 -10.18579 -9.09921 -8.18061 -6.26130 0.85656 0.94291 1.30058 1.31542 1.42265 1.71696 1.96253 2.37154 3.00277 3.08210 3.13278 3.20485 3.49215 3.61340 3.71655 3.83825 4.10780 4.12487 4.16821 4.30062 4.32822 4.38663 4.43598 4.49756 4.53204 4.61178 4.63405 4.67028 4.69195 4.71079 4.81733 4.82213 4.91739 4.93868 4.94256 5.09168 5.11064 5.14024 5.16724 5.20578 5.31576 5.51046 5.55815 5.73571 5.78891 5.82027 5.89264 6.14313 6.47129 6.56927 6.84610 6.91115 7.39767 7.89776 8.87615 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.004618 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.945106 B = 6061.969586 C = 7392.516803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C -0.105 4.105 4 C 0.139 3.861 5 N -0.466 5.466 6 C 0.173 3.827 7 C 0.008 3.992 8 H 0.102 0.898 9 C -0.132 4.132 10 C 0.104 3.896 11 O -0.575 6.575 12 N -0.315 5.315 13 N -0.368 5.368 14 C 0.393 3.607 15 N -0.448 5.448 16 C 0.211 3.789 17 C -0.535 4.535 18 H 0.044 0.956 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.938 3.062 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.285 1.285 25 C 0.074 3.926 26 C 0.076 3.924 27 O -0.397 6.397 28 C 0.027 3.973 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.006 0.994 44 H 0.262 0.738 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 11.072 -1.453 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C -0.162 4.162 4 C 0.018 3.982 5 N -0.159 5.159 6 C -0.096 4.096 7 C -0.013 4.013 8 H 0.120 0.880 9 C -0.191 4.191 10 C 0.025 3.975 11 O -0.384 6.384 12 N -0.154 5.154 13 N -0.212 5.212 14 C 0.036 3.964 15 N -0.171 5.171 16 C 0.087 3.913 17 C -0.574 4.574 18 H 0.062 0.938 19 C -0.173 4.173 20 N -0.558 5.558 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.211 1.211 25 C -0.053 4.053 26 C -0.001 4.001 27 O -0.316 6.316 28 C -0.069 4.069 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.081 0.919 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.072 0.928 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.035 10.533 -1.913 16.868 hybrid contribution 0.943 -0.859 0.171 1.286 sum -12.093 9.674 -1.742 15.584 Atomic orbital electron populations 1.24064 0.94069 1.03676 0.96768 1.21804 0.96019 0.94530 1.03581 1.20713 1.00023 0.93857 1.01603 1.21064 1.01672 0.96725 0.78764 1.46228 1.12109 1.43806 1.13772 1.24747 0.97756 1.00165 0.86970 1.19457 0.83489 0.96615 1.01706 0.88000 1.21704 1.02984 0.92463 1.01907 1.21763 0.82009 0.97166 0.96589 1.86349 1.16058 1.75660 1.60336 1.73692 1.00506 1.18958 1.22222 1.74513 1.13079 1.16181 1.17446 1.22757 0.88729 0.95837 0.89100 1.59472 1.06163 1.36541 1.14961 1.19768 0.92514 0.90318 0.88707 1.21749 1.34695 1.07868 0.93098 0.93765 1.25417 0.97089 0.99589 0.95250 1.70001 1.44119 1.36533 1.05129 0.85856 0.79730 0.79670 0.78270 1.19525 1.20634 1.21058 1.22007 0.93187 0.98306 0.91828 1.22506 0.91130 0.94484 0.91949 1.88246 1.44545 1.39063 1.59784 1.22804 0.90991 0.94084 0.98998 0.85605 0.87431 0.92832 0.89613 0.92650 0.87556 0.89365 0.88990 0.92735 0.93972 0.93231 0.93021 0.74758 0.91883 0.97639 0.92846 0.89525 0.93868 0.91921 0.90669 0.90723 0.92771 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 13.86 67.77 0.94 -1.79 16 2 C -0.16 -3.84 5.64 -16.50 -0.09 -3.93 16 3 C -0.11 -2.46 10.03 71.23 0.71 -1.75 16 4 C 0.14 4.32 5.82 85.63 0.50 4.82 16 5 N -0.47 -17.57 2.79 -518.90 -1.45 -19.02 16 6 C 0.17 6.25 6.58 137.64 0.91 7.16 16 7 C 0.01 0.22 3.00 -11.54 -0.03 0.19 16 8 H 0.10 2.40 5.61 -2.39 -0.01 2.39 16 9 C -0.13 -3.57 9.07 71.98 0.65 -2.91 16 10 C 0.10 2.26 6.41 71.98 0.46 2.72 16 11 O -0.58 -9.92 13.20 -148.98 -1.97 -11.89 16 12 N -0.31 -13.63 12.18 -49.54 -0.60 -14.24 16 13 N -0.37 -17.45 11.28 -58.00 -0.65 -18.10 16 14 C 0.39 17.30 6.17 260.11 1.61 18.91 16 15 N -0.45 -19.27 4.68 -710.37 -3.33 -22.60 16 16 C 0.21 10.74 4.43 85.56 0.38 11.12 16 17 C -0.53 -30.51 7.73 25.60 0.20 -30.31 16 18 H 0.04 2.68 6.28 -2.91 -0.02 2.66 16 19 C 0.03 1.50 5.45 84.65 0.46 1.97 16 20 N -0.92 -54.13 13.29 21.44 0.29 -53.84 16 21 Si 0.94 46.86 29.54 68.60 2.03 48.88 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 24 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 25 C 0.07 2.98 4.81 86.30 0.42 3.40 16 26 C 0.08 2.51 6.22 71.98 0.45 2.95 16 27 O -0.40 -15.45 7.80 -148.98 -1.16 -16.62 16 28 C 0.03 0.79 11.01 113.37 1.25 2.03 16 29 H 0.13 1.78 8.04 -2.91 -0.02 1.75 16 30 H 0.11 1.83 6.57 -2.91 -0.02 1.81 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16 33 H 0.05 1.47 8.09 -2.38 -0.02 1.45 16 34 H 0.11 2.87 7.28 -2.39 -0.02 2.85 16 35 H 0.09 3.17 6.04 -2.39 -0.01 3.16 16 36 H 0.09 2.05 7.82 -2.39 -0.02 2.03 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.40 3.14 9.12 -74.06 -0.68 2.46 16 42 H 0.06 3.38 5.64 -2.39 -0.01 3.37 16 43 H 0.01 0.31 6.09 -2.39 -0.01 0.29 16 44 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.09 3.24 7.75 -2.39 -0.02 3.23 16 46 H 0.04 2.05 5.83 -2.39 -0.01 2.04 16 47 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.08 2.02 8.12 -2.38 -0.02 2.00 16 49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.05 1.27 8.12 -2.38 -0.02 1.26 16 51 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.40 410.21 2.21 -72.19 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.26 Total: 20.65 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 8.80 Total: 14.57 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -5.75 Total: -127.80 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -3.13 Total: -28.50 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.40 2.21 -72.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342682901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.306 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds