Wall clock time and date at job start Tue Mar 31 2020 21:09:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50699 * 119.99964 * 2 1
4 4 C 1.50697 * 119.99788 * 180.02562 * 2 1 3
5 5 N 1.46492 * 109.47381 * 95.14042 * 4 2 1
6 6 C 1.36745 * 127.13828 * 268.48458 * 5 4 2
7 7 C 1.50702 * 126.34393 * 0.05644 * 6 5 4
8 8 H 1.09006 * 109.47017 * 359.97438 * 7 6 5
9 9 C 1.52999 * 109.47067 * 120.00212 * 7 6 5
10 10 C 1.53002 * 109.46945 * 240.00265 * 7 6 5
11 11 O 1.42900 * 109.47099 * 174.99983 * 10 7 6
12 12 N 1.30291 * 107.30819 * 180.02562 * 6 5 4
13 13 N 1.28529 * 110.05230 * 359.72638 * 12 6 5
14 14 C 1.31219 * 109.86184 * 0.45784 * 13 12 6
15 15 N 1.38573 * 126.47596 * 179.82770 * 14 13 12
16 16 C 1.46897 * 110.99909 * 19.35207 * 15 14 13
17 17 C 1.50703 * 109.47038 * 71.53400 * 16 15 14
18 18 H 1.07997 * 120.00041 * 2.39016 * 17 16 15
19 19 C 1.37880 * 119.99766 * 182.39975 * 17 16 15
20 20 N 1.31505 * 120.00475 * 354.39559 * 19 17 16
21 21 Si 1.86808 * 119.99606 * 174.40125 * 19 17 16
22 22 H 1.48503 * 109.46914 * 89.99611 * 21 19 17
23 23 H 1.48497 * 109.46985 * 209.99481 * 21 19 17
24 24 H 1.48491 * 109.47122 * 329.99633 * 21 19 17
25 25 C 1.46904 * 110.99831 * 255.40248 * 15 14 13
26 26 C 1.52995 * 109.47257 * 189.99557 * 25 15 14
27 27 O 1.42907 * 109.46898 * 65.00063 * 26 25 15
28 28 C 1.42896 * 113.99787 * 179.97438 * 27 26 25
29 29 H 1.07997 * 120.00143 * 179.97438 * 1 2 3
30 30 H 1.08007 * 119.99944 * 0.02562 * 1 2 3
31 31 H 1.08994 * 109.47216 * 275.73663 * 3 2 1
32 32 H 1.08999 * 109.46819 * 35.73766 * 3 2 1
33 33 H 1.09001 * 109.46653 * 155.73447 * 3 2 1
34 34 H 1.09006 * 109.47224 * 335.13262 * 4 2 1
35 35 H 1.09008 * 109.46837 * 215.14386 * 4 2 1
36 36 H 1.08995 * 109.47237 * 59.99548 * 9 7 6
37 37 H 1.09005 * 109.46766 * 180.02562 * 9 7 6
38 38 H 1.08999 * 109.46971 * 299.99750 * 9 7 6
39 39 H 1.09006 * 109.47158 * 294.99717 * 10 7 6
40 40 H 1.08994 * 109.47771 * 54.99831 * 10 7 6
41 41 H 0.96699 * 114.00014 * 179.97438 * 11 10 7
42 42 H 1.09006 * 109.47301 * 191.53154 * 16 15 14
43 43 H 1.09000 * 109.47353 * 311.53106 * 16 15 14
44 44 H 0.97001 * 120.00276 * 180.02562 * 20 19 17
45 45 H 1.08999 * 109.46896 * 69.99708 * 25 15 14
46 46 H 1.09003 * 109.46966 * 310.00179 * 25 15 14
47 47 H 1.08999 * 109.47082 * 184.99638 * 26 25 15
48 48 H 1.08997 * 109.47113 * 305.00216 * 26 25 15
49 49 H 1.09001 * 109.47360 * 179.97438 * 28 27 26
50 50 H 1.09004 * 109.47320 * 300.00338 * 28 27 26
51 51 H 1.09000 * 109.47295 * 60.00040 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.0635 -1.3051 -0.0006
5 7 2.4148 -1.6656 -1.3763
6 6 1.6857 -2.4353 -2.2399
7 6 0.3536 -3.0798 -1.9550
8 1 0.0445 -2.8408 -0.9374
9 6 -0.6895 -2.5529 -2.9425
10 6 0.4784 -4.5972 -2.1064
11 8 -0.7511 -5.2168 -1.7239
12 7 2.3558 -2.5076 -3.3550
13 7 3.4475 -1.8364 -3.2573
14 6 3.5378 -1.3035 -2.0616
15 7 4.5747 -0.5164 -1.5867
16 6 5.3599 0.0444 -2.6943
17 6 4.5529 1.1073 -3.3944
18 1 3.5717 1.3697 -3.0274
19 6 5.0673 1.7445 -4.5037
20 7 6.3027 1.5054 -4.8857
21 14 4.0090 2.9477 -5.4641
22 1 4.1822 4.3132 -4.9068
23 1 4.4206 2.9394 -6.8908
24 1 2.5832 2.5469 -5.3579
25 6 5.4315 -1.2745 -0.6650
26 6 6.4065 -0.3198 0.0268
27 8 5.6769 0.5910 0.8516
28 6 6.4982 1.5309 1.5472
29 1 -0.5400 -0.9353 -0.0004
30 1 -0.5400 0.9354 -0.0004
31 1 2.1562 1.6711 -1.0225
32 1 1.5227 2.0368 0.6002
33 1 3.0565 1.1512 0.4224
34 1 1.4376 -2.0862 0.4312
35 1 2.9729 -1.1998 0.5911
36 1 -0.3803 -2.7922 -3.9599
37 1 -1.6532 -3.0187 -2.7361
38 1 -0.7785 -1.4719 -2.8346
39 1 0.7007 -4.8417 -3.1452
40 1 1.2829 -4.9612 -1.4674
41 1 -0.7445 -6.1811 -1.7953
42 1 6.2777 0.4837 -2.3032
43 1 5.6086 -0.7475 -3.4009
44 1 6.6646 1.9540 -5.6659
45 1 5.9918 -2.0243 -1.2235
46 1 4.8121 -1.7674 0.0844
47 1 7.0999 -0.8922 0.6429
48 1 6.9641 0.2381 -0.7255
49 1 5.8698 2.1863 2.1503
50 1 7.1934 0.9966 2.1948
51 1 7.0581 2.1272 0.8268
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001342682902.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:09:32
Heat of formation + Delta-G solvation = 14.655777 kcal
Electronic energy + Delta-G solvation = -31976.303854 eV
Core-core repulsion = 27913.581347 eV
Total energy + Delta-G solvation = -4062.722507 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.39871 -38.10017 -37.46415 -36.58754 -36.26987 -33.85670 -32.98296 -32.42411
-30.01250 -28.06693 -27.21342 -26.80406 -26.56788 -26.32220 -25.63091 -23.20473
-22.56466 -21.86329 -20.23885 -19.30837 -18.55739 -17.63652 -16.95642 -16.53136
-16.11623 -15.87492 -15.59292 -15.23626 -14.94388 -14.68076 -14.53487 -14.39495
-14.17992 -14.06963 -13.81518 -13.21641 -13.07667 -12.73672 -12.59558 -12.25628
-12.06080 -11.94503 -11.77345 -11.59182 -11.55473 -11.46094 -11.31438 -11.23246
-10.88737 -10.87180 -10.75223 -10.63484 -10.48113 -10.09229 -9.94954 -9.87905
-9.55341 -9.33998 -9.28258 -9.05813 -8.80126 -8.30177 -7.39729 -5.97550
-3.94563 1.97941 2.37037 2.98757 3.36630 3.43273 3.49509 3.53359
4.04052 4.09008 4.38961 4.57809 4.64167 4.69250 4.78553 4.89898
5.08141 5.18856 5.26021 5.32226 5.36885 5.41050 5.44833 5.53537
5.58007 5.58746 5.61444 5.66250 5.79538 5.81512 5.89232 5.90723
5.94869 6.00348 6.02268 6.15319 6.19519 6.27296 6.37816 6.45080
6.54513 6.68208 6.90181 6.97695 7.23954 7.41698 7.45580 7.45981
7.66666 8.04975 8.10726 8.41338 9.05479 9.50591 9.66995 11.14109
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.008836 B = 0.004915 C = 0.004013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3168.088271 B = 5695.890079 C = 6976.176073
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.127 4.127
3 C -0.116 4.116
4 C 0.148 3.852
5 N -0.475 5.475
6 C 0.150 3.850
7 C 0.012 3.988
8 H 0.084 0.916
9 C -0.135 4.135
10 C 0.088 3.912
11 O -0.573 6.573
12 N -0.280 5.280
13 N -0.300 5.300
14 C 0.397 3.603
15 N -0.447 5.447
16 C 0.201 3.799
17 C -0.490 4.490
18 H 0.056 0.944
19 C 0.062 3.938
20 N -0.898 5.898
21 Si 0.893 3.107
22 H -0.282 1.282
23 H -0.286 1.286
24 H -0.276 1.276
25 C 0.062 3.938
26 C 0.066 3.934
27 O -0.374 6.374
28 C 0.034 3.966
29 H 0.095 0.905
30 H 0.102 0.898
31 H 0.074 0.926
32 H 0.054 0.946
33 H 0.082 0.918
34 H 0.088 0.912
35 H 0.103 0.897
36 H 0.066 0.934
37 H 0.068 0.932
38 H 0.056 0.944
39 H 0.061 0.939
40 H 0.044 0.956
41 H 0.380 0.620
42 H 0.042 0.958
43 H 0.022 0.978
44 H 0.260 0.740
45 H 0.056 0.944
46 H 0.068 0.932
47 H 0.048 0.952
48 H 0.067 0.933
49 H 0.080 0.920
50 H 0.032 0.968
51 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.426 -8.474 14.672 18.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.128 4.128
3 C -0.172 4.172
4 C 0.025 3.975
5 N -0.170 5.170
6 C -0.117 4.117
7 C -0.010 4.010
8 H 0.102 0.898
9 C -0.194 4.194
10 C 0.009 3.991
11 O -0.379 6.379
12 N -0.120 5.120
13 N -0.143 5.143
14 C 0.042 3.958
15 N -0.172 5.172
16 C 0.078 3.922
17 C -0.529 4.529
18 H 0.074 0.926
19 C -0.139 4.139
20 N -0.538 5.538
21 Si 0.721 3.279
22 H -0.209 1.209
23 H -0.212 1.212
24 H -0.201 1.201
25 C -0.066 4.066
26 C -0.010 4.010
27 O -0.293 6.293
28 C -0.063 4.063
29 H 0.113 0.887
30 H 0.120 0.880
31 H 0.093 0.907
32 H 0.073 0.927
33 H 0.100 0.900
34 H 0.106 0.894
35 H 0.121 0.879
36 H 0.085 0.915
37 H 0.087 0.913
38 H 0.075 0.925
39 H 0.080 0.920
40 H 0.062 0.938
41 H 0.227 0.773
42 H 0.060 0.940
43 H 0.040 0.960
44 H 0.070 0.930
45 H 0.074 0.926
46 H 0.086 0.914
47 H 0.066 0.934
48 H 0.085 0.915
49 H 0.099 0.901
50 H 0.050 0.950
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -7.429 -7.765 13.490 17.247
hybrid contribution 0.015 0.164 0.234 0.287
sum -7.414 -7.601 13.724 17.352
Atomic orbital electron populations
1.23737 0.95110 1.01915 1.01470 1.21948 0.95291 0.95970 0.99585
1.20838 1.00627 0.92722 1.03034 1.20810 1.01281 0.94931 0.80451
1.46239 1.16633 1.40879 1.13296 1.24072 0.97992 1.01010 0.88614
1.19210 0.87829 0.92761 1.01155 0.89751 1.21717 0.97511 1.00933
0.99194 1.22104 0.85372 0.91824 0.99759 1.86401 1.36279 1.24605
1.90588 1.73946 1.02059 1.17439 1.18580 1.74810 1.13048 1.11423
1.15023 1.22619 0.89409 0.95294 0.88527 1.58978 1.09865 1.27390
1.20936 1.19939 0.92296 0.94813 0.85118 1.20844 1.02321 1.18869
1.10873 0.92601 1.24811 0.94890 0.97097 0.97066 1.69921 1.13869
1.43734 1.26226 0.86570 0.80937 0.80970 0.79379 1.20868 1.21190
1.20091 1.22131 0.95073 0.94446 0.94926 1.22620 0.93557 0.91535
0.93336 1.87923 1.33350 1.46430 1.61588 1.22664 0.95482 0.92405
0.95787 0.88677 0.88012 0.90719 0.92713 0.89956 0.89373 0.87869
0.91460 0.91332 0.92528 0.92041 0.93796 0.77282 0.93984 0.96009
0.92992 0.92628 0.91391 0.93417 0.91456 0.90133 0.94963 0.93930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.26 13.91 29.01 0.40 -1.86 16
2 C -0.13 -1.79 5.63 -101.07 -0.57 -2.35 16
3 C -0.12 -1.79 10.02 36.01 0.36 -1.43 16
4 C 0.15 2.04 6.02 -5.20 -0.03 2.01 16
5 N -0.47 -8.34 2.79 -115.37 -0.32 -8.66 16
6 C 0.15 2.65 6.58 -154.01 -1.01 1.63 16
7 C 0.01 0.16 2.99 -91.77 -0.27 -0.12 16
8 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16
9 C -0.14 -1.81 9.07 37.16 0.34 -1.47 16
10 C 0.09 1.03 6.41 37.16 0.24 1.26 16
11 O -0.57 -5.75 13.20 -35.23 -0.46 -6.22 16
12 N -0.28 -6.04 12.18 32.99 0.40 -5.64 16
13 N -0.30 -7.26 11.00 30.31 0.33 -6.93 16
14 C 0.40 8.46 6.37 -318.88 -2.03 6.43 16
15 N -0.45 -9.29 4.44 -175.88 -0.78 -10.07 16
16 C 0.20 5.11 4.36 -4.98 -0.02 5.09 16
17 C -0.49 -13.90 8.73 -34.44 -0.30 -14.20 16
18 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16
19 C 0.06 1.81 5.45 -17.82 -0.10 1.71 16
20 N -0.90 -26.72 13.30 55.43 0.74 -25.99 16
21 Si 0.89 22.73 29.54 -169.99 -5.02 17.71 16
22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
25 C 0.06 1.04 5.17 -3.82 -0.02 1.02 16
26 C 0.07 1.01 6.02 37.16 0.22 1.23 16
27 O -0.37 -5.80 10.62 -35.23 -0.37 -6.17 16
28 C 0.03 0.41 11.01 101.05 1.11 1.52 16
29 H 0.09 1.03 7.25 -52.49 -0.38 0.65 16
30 H 0.10 1.17 8.05 -52.48 -0.42 0.75 16
31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16
32 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16
33 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16
34 H 0.09 0.97 7.01 -51.93 -0.36 0.61 16
35 H 0.10 1.39 6.47 -51.92 -0.34 1.06 16
36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
37 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16
38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
41 H 0.38 2.07 9.12 45.56 0.42 2.49 16
42 H 0.04 1.09 5.88 -51.93 -0.31 0.78 16
43 H 0.02 0.62 7.47 -51.93 -0.39 0.23 16
44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
45 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16
46 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16
47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.07 1.16 6.10 -51.93 -0.32 0.84 16
49 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
50 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16
51 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
LS Contribution 417.62 15.07 6.29 6.29
Total: -1.00 -34.56 417.62 -8.65 -43.21
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -7.77 Total: 2.01 kcal
Atomic # 6 Polarization: 2.15 SS G_CDS: -1.68 Total: 0.47 kcal
Atomic # 7 Polarization: -57.67 SS G_CDS: 0.37 Total: -57.30 kcal
Atomic # 8 Polarization: -11.55 SS G_CDS: -0.84 Total: -12.39 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -34.56 -8.65 -43.21 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001342682902.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.863 kcal
(2) G-P(sol) polarization free energy of solvation -34.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.306 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.656 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds