Wall clock time and date at job start Tue Mar 31 2020 21:09:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50699 * 119.99964 * 2 1
4 4 C 1.50697 * 119.99788 * 180.02562 * 2 1 3
5 5 N 1.46492 * 109.47381 * 95.14042 * 4 2 1
6 6 C 1.36745 * 127.13828 * 268.48458 * 5 4 2
7 7 C 1.50702 * 126.34393 * 0.05644 * 6 5 4
8 8 H 1.09006 * 109.47017 * 359.97438 * 7 6 5
9 9 C 1.52999 * 109.47067 * 120.00212 * 7 6 5
10 10 C 1.53002 * 109.46945 * 240.00265 * 7 6 5
11 11 O 1.42900 * 109.47099 * 174.99983 * 10 7 6
12 12 N 1.30291 * 107.30819 * 180.02562 * 6 5 4
13 13 N 1.28529 * 110.05230 * 359.72638 * 12 6 5
14 14 C 1.31219 * 109.86184 * 0.45784 * 13 12 6
15 15 N 1.38573 * 126.47596 * 179.82770 * 14 13 12
16 16 C 1.46897 * 110.99909 * 19.35207 * 15 14 13
17 17 C 1.50703 * 109.47038 * 71.53400 * 16 15 14
18 18 H 1.07997 * 120.00041 * 2.39016 * 17 16 15
19 19 C 1.37880 * 119.99766 * 182.39975 * 17 16 15
20 20 N 1.31505 * 120.00475 * 354.39559 * 19 17 16
21 21 Si 1.86808 * 119.99606 * 174.40125 * 19 17 16
22 22 H 1.48503 * 109.46914 * 89.99611 * 21 19 17
23 23 H 1.48497 * 109.46985 * 209.99481 * 21 19 17
24 24 H 1.48491 * 109.47122 * 329.99633 * 21 19 17
25 25 C 1.46904 * 110.99831 * 255.40248 * 15 14 13
26 26 C 1.52995 * 109.47257 * 189.99557 * 25 15 14
27 27 O 1.42907 * 109.46898 * 65.00063 * 26 25 15
28 28 C 1.42896 * 113.99787 * 179.97438 * 27 26 25
29 29 H 1.07997 * 120.00143 * 179.97438 * 1 2 3
30 30 H 1.08007 * 119.99944 * 0.02562 * 1 2 3
31 31 H 1.08994 * 109.47216 * 275.73663 * 3 2 1
32 32 H 1.08999 * 109.46819 * 35.73766 * 3 2 1
33 33 H 1.09001 * 109.46653 * 155.73447 * 3 2 1
34 34 H 1.09006 * 109.47224 * 335.13262 * 4 2 1
35 35 H 1.09008 * 109.46837 * 215.14386 * 4 2 1
36 36 H 1.08995 * 109.47237 * 59.99548 * 9 7 6
37 37 H 1.09005 * 109.46766 * 180.02562 * 9 7 6
38 38 H 1.08999 * 109.46971 * 299.99750 * 9 7 6
39 39 H 1.09006 * 109.47158 * 294.99717 * 10 7 6
40 40 H 1.08994 * 109.47771 * 54.99831 * 10 7 6
41 41 H 0.96699 * 114.00014 * 179.97438 * 11 10 7
42 42 H 1.09006 * 109.47301 * 191.53154 * 16 15 14
43 43 H 1.09000 * 109.47353 * 311.53106 * 16 15 14
44 44 H 0.97001 * 120.00276 * 180.02562 * 20 19 17
45 45 H 1.08999 * 109.46896 * 69.99708 * 25 15 14
46 46 H 1.09003 * 109.46966 * 310.00179 * 25 15 14
47 47 H 1.08999 * 109.47082 * 184.99638 * 26 25 15
48 48 H 1.08997 * 109.47113 * 305.00216 * 26 25 15
49 49 H 1.09001 * 109.47360 * 179.97438 * 28 27 26
50 50 H 1.09004 * 109.47320 * 300.00338 * 28 27 26
51 51 H 1.09000 * 109.47295 * 60.00040 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.0635 -1.3051 -0.0006
5 7 2.4148 -1.6656 -1.3763
6 6 1.6857 -2.4353 -2.2399
7 6 0.3536 -3.0798 -1.9550
8 1 0.0445 -2.8408 -0.9374
9 6 -0.6895 -2.5529 -2.9425
10 6 0.4784 -4.5972 -2.1064
11 8 -0.7511 -5.2168 -1.7239
12 7 2.3558 -2.5076 -3.3550
13 7 3.4475 -1.8364 -3.2573
14 6 3.5378 -1.3035 -2.0616
15 7 4.5747 -0.5164 -1.5867
16 6 5.3599 0.0444 -2.6943
17 6 4.5529 1.1073 -3.3944
18 1 3.5717 1.3697 -3.0274
19 6 5.0673 1.7445 -4.5037
20 7 6.3027 1.5054 -4.8857
21 14 4.0090 2.9477 -5.4641
22 1 4.1822 4.3132 -4.9068
23 1 4.4206 2.9394 -6.8908
24 1 2.5832 2.5469 -5.3579
25 6 5.4315 -1.2745 -0.6650
26 6 6.4065 -0.3198 0.0268
27 8 5.6769 0.5910 0.8516
28 6 6.4982 1.5309 1.5472
29 1 -0.5400 -0.9353 -0.0004
30 1 -0.5400 0.9354 -0.0004
31 1 2.1562 1.6711 -1.0225
32 1 1.5227 2.0368 0.6002
33 1 3.0565 1.1512 0.4224
34 1 1.4376 -2.0862 0.4312
35 1 2.9729 -1.1998 0.5911
36 1 -0.3803 -2.7922 -3.9599
37 1 -1.6532 -3.0187 -2.7361
38 1 -0.7785 -1.4719 -2.8346
39 1 0.7007 -4.8417 -3.1452
40 1 1.2829 -4.9612 -1.4674
41 1 -0.7445 -6.1811 -1.7953
42 1 6.2777 0.4837 -2.3032
43 1 5.6086 -0.7475 -3.4009
44 1 6.6646 1.9540 -5.6659
45 1 5.9918 -2.0243 -1.2235
46 1 4.8121 -1.7674 0.0844
47 1 7.0999 -0.8922 0.6429
48 1 6.9641 0.2381 -0.7255
49 1 5.8698 2.1863 2.1503
50 1 7.1934 0.9966 2.1948
51 1 7.0581 2.1272 0.8268
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001342682902.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:09:31
Heat of formation + Delta-G solvation = -9.182561 kcal
Electronic energy + Delta-G solvation = -31977.337562 eV
Core-core repulsion = 27913.581347 eV
Total energy + Delta-G solvation = -4063.756215 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.89874 -39.45973 -38.40474 -37.80710 -37.60628 -34.96343 -34.77063 -34.08497
-31.39684 -29.82480 -28.56308 -28.24440 -27.72700 -27.31301 -26.83071 -25.06734
-23.92819 -23.25297 -21.66677 -20.71285 -19.70148 -18.77290 -18.52857 -18.00664
-17.40123 -17.24503 -17.07772 -16.66024 -16.24947 -15.97124 -15.78295 -15.74136
-15.43061 -15.15909 -14.94594 -14.75178 -14.61135 -14.01880 -13.97880 -13.62823
-13.50481 -13.15923 -13.07545 -12.97266 -12.79737 -12.76003 -12.72021 -12.58671
-12.50727 -12.38574 -12.18135 -12.10993 -11.92562 -11.76098 -11.52608 -11.26348
-10.95646 -10.87824 -10.65613 -10.42390 -10.35552 -10.15342 -9.06490 -8.20809
-6.23528 0.75655 1.03263 1.30747 1.34476 1.43637 1.69143 1.98268
2.36608 2.86102 2.95952 3.14530 3.16593 3.52188 3.63955 3.74478
3.85672 3.94561 4.06789 4.13464 4.16893 4.30522 4.35029 4.40492
4.46894 4.51019 4.53110 4.62167 4.63668 4.67199 4.73209 4.75424
4.86752 4.87033 4.92836 4.96256 4.97356 4.99439 5.12762 5.13552
5.26307 5.28543 5.35991 5.56444 5.62219 5.78079 5.87143 5.95492
6.26166 6.36295 6.50352 6.82338 6.89390 7.40506 7.95747 8.90823
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.008836 B = 0.004915 C = 0.004013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3168.088271 B = 5695.890079 C = 6976.176073
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.156 4.156
3 C -0.105 4.105
4 C 0.144 3.856
5 N -0.468 5.468
6 C 0.174 3.826
7 C 0.011 3.989
8 H 0.110 0.890
9 C -0.130 4.130
10 C 0.098 3.902
11 O -0.576 6.576
12 N -0.322 5.322
13 N -0.358 5.358
14 C 0.384 3.616
15 N -0.442 5.442
16 C 0.224 3.776
17 C -0.496 4.496
18 H 0.039 0.961
19 C 0.014 3.986
20 N -0.926 5.926
21 Si 0.950 3.050
22 H -0.266 1.266
23 H -0.280 1.280
24 H -0.285 1.285
25 C 0.059 3.941
26 C 0.073 3.927
27 O -0.393 6.393
28 C 0.029 3.971
29 H 0.119 0.881
30 H 0.110 0.890
31 H 0.029 0.971
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.127 0.873
35 H 0.105 0.895
36 H 0.047 0.953
37 H 0.092 0.908
38 H 0.046 0.954
39 H 0.049 0.951
40 H 0.051 0.949
41 H 0.402 0.598
42 H 0.034 0.966
43 H -0.016 1.016
44 H 0.263 0.737
45 H 0.051 0.949
46 H 0.093 0.907
47 H 0.086 0.914
48 H 0.039 0.961
49 H 0.096 0.904
50 H 0.058 0.942
51 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.750 -9.203 17.307 21.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.157 4.157
3 C -0.162 4.162
4 C 0.023 3.977
5 N -0.163 5.163
6 C -0.095 4.095
7 C -0.010 4.010
8 H 0.128 0.872
9 C -0.188 4.188
10 C 0.019 3.981
11 O -0.385 6.385
12 N -0.161 5.161
13 N -0.202 5.202
14 C 0.027 3.973
15 N -0.167 5.167
16 C 0.099 3.901
17 C -0.535 4.535
18 H 0.057 0.943
19 C -0.184 4.184
20 N -0.567 5.567
21 Si 0.776 3.224
22 H -0.191 1.191
23 H -0.205 1.205
24 H -0.211 1.211
25 C -0.068 4.068
26 C -0.004 4.004
27 O -0.312 6.312
28 C -0.067 4.067
29 H 0.137 0.863
30 H 0.128 0.872
31 H 0.048 0.952
32 H 0.093 0.907
33 H 0.087 0.913
34 H 0.145 0.855
35 H 0.123 0.877
36 H 0.067 0.933
37 H 0.110 0.890
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.069 0.931
41 H 0.252 0.748
42 H 0.052 0.948
43 H 0.002 0.998
44 H 0.072 0.928
45 H 0.070 0.930
46 H 0.111 0.889
47 H 0.104 0.896
48 H 0.057 0.943
49 H 0.114 0.886
50 H 0.076 0.924
51 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -9.761 -8.510 16.157 20.706
hybrid contribution 0.610 0.336 -0.487 0.850
sum -9.150 -8.174 15.670 19.902
Atomic orbital electron populations
1.24026 0.94375 1.03492 0.97596 1.21858 0.95978 0.95168 1.02732
1.20671 1.00729 0.94436 1.00352 1.21153 1.02210 0.96078 0.78279
1.46426 1.15206 1.40083 1.14544 1.24881 0.98279 0.98966 0.87326
1.19460 0.85203 0.93878 1.02437 0.87182 1.21674 0.98499 1.00501
0.98170 1.21834 0.86337 0.90598 0.99310 1.86338 1.35095 1.26679
1.90355 1.73827 1.02376 1.18924 1.20924 1.74679 1.14945 1.13354
1.17177 1.22592 0.90471 0.95568 0.88674 1.58884 1.09915 1.28543
1.19326 1.19410 0.92156 0.92977 0.85590 1.21009 1.01700 1.19432
1.11352 0.94279 1.25546 0.95995 0.98880 0.98002 1.70013 1.15062
1.44837 1.26746 0.85681 0.78634 0.79702 0.78361 1.19072 1.20497
1.21062 1.22314 0.95291 0.94656 0.94552 1.22530 0.93212 0.91377
0.93263 1.87886 1.34549 1.47059 1.61747 1.22838 0.95949 0.92236
0.95672 0.86333 0.87160 0.95232 0.90669 0.91328 0.85544 0.87703
0.93335 0.88952 0.93458 0.93311 0.93092 0.74765 0.94798 0.99818
0.92778 0.93042 0.88888 0.89594 0.94310 0.88606 0.92364 0.95223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.28 13.91 67.78 0.94 -2.34 16
2 C -0.16 -4.07 5.63 -16.49 -0.09 -4.16 16
3 C -0.11 -3.23 10.02 71.24 0.71 -2.51 16
4 C 0.14 3.60 6.02 85.63 0.52 4.12 16
5 N -0.47 -16.08 2.79 -518.91 -1.45 -17.53 16
6 C 0.17 6.00 6.58 137.64 0.91 6.90 16
7 C 0.01 0.27 2.99 -11.54 -0.03 0.23 16
8 H 0.11 2.13 6.16 -2.38 -0.01 2.12 16
9 C -0.13 -3.21 9.07 71.98 0.65 -2.56 16
10 C 0.10 2.03 6.41 71.98 0.46 2.49 16
11 O -0.58 -9.39 13.20 -148.98 -1.97 -11.36 16
12 N -0.32 -14.26 12.18 -49.53 -0.60 -14.86 16
13 N -0.36 -18.18 11.00 -58.01 -0.64 -18.82 16
14 C 0.38 16.84 6.37 260.11 1.66 18.50 16
15 N -0.44 -19.10 4.44 -710.35 -3.15 -22.25 16
16 C 0.22 12.01 4.36 85.56 0.37 12.39 16
17 C -0.50 -29.48 8.73 25.60 0.22 -29.25 16
18 H 0.04 2.41 7.81 -2.91 -0.02 2.38 16
19 C 0.01 0.84 5.45 84.66 0.46 1.30 16
20 N -0.93 -57.01 13.30 21.45 0.29 -56.72 16
21 Si 0.95 47.89 29.54 68.60 2.03 49.91 16
22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16
23 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16
24 H -0.28 -14.66 7.11 99.48 0.71 -13.96 16
25 C 0.06 1.98 5.17 86.30 0.45 2.43 16
26 C 0.07 2.20 6.02 71.98 0.43 2.64 16
27 O -0.39 -11.93 10.62 -148.98 -1.58 -13.52 16
28 C 0.03 0.68 11.01 113.37 1.25 1.93 16
29 H 0.12 1.94 7.25 -2.91 -0.02 1.92 16
30 H 0.11 2.14 8.05 -2.91 -0.02 2.12 16
31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16
32 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16
33 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16
34 H 0.13 2.20 7.01 -2.38 -0.02 2.18 16
35 H 0.10 2.61 6.47 -2.38 -0.02 2.59 16
36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.09 1.85 7.82 -2.38 -0.02 1.83 16
38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16
40 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16
41 H 0.40 2.92 9.12 -74.06 -0.68 2.24 16
42 H 0.03 1.87 5.88 -2.38 -0.01 1.85 16
43 H -0.02 -0.98 7.47 -2.39 -0.02 -1.00 16
44 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16
45 H 0.05 1.77 8.12 -2.39 -0.02 1.76 16
46 H 0.09 2.65 6.54 -2.39 -0.02 2.63 16
47 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
48 H 0.04 1.39 6.10 -2.39 -0.01 1.37 16
49 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16
50 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16
51 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -79.93 417.62 2.07 -77.86
By element:
Atomic # 1 Polarization: 14.93 SS G_CDS: 0.25 Total: 15.18 kcal
Atomic # 6 Polarization: 3.20 SS G_CDS: 8.91 Total: 12.11 kcal
Atomic # 7 Polarization: -124.63 SS G_CDS: -5.56 Total: -130.19 kcal
Atomic # 8 Polarization: -21.32 SS G_CDS: -3.55 Total: -24.87 kcal
Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.91 kcal
Total: -79.93 2.07 -77.86 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001342682902.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.673 kcal
(2) G-P(sol) polarization free energy of solvation -79.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.183 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds