Wall clock time and date at job start Tue Mar 31 2020 21:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46936 * 2 1 4 4 C 1.36741 * 127.13871 * 264.47168 * 3 2 1 5 5 C 1.50693 * 126.34559 * 359.94637 * 4 3 2 6 6 C 1.53006 * 109.47352 * 89.99753 * 5 4 3 7 7 C 1.50693 * 109.47352 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00029 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99875 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00199 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00013 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46807 * 59.99254 * 11 9 7 13 13 H 1.48496 * 109.47239 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46845 * 299.99845 * 11 9 7 15 15 N 1.30300 * 107.30564 * 179.97438 * 4 3 2 16 16 N 1.28529 * 110.05337 * 359.73021 * 15 4 3 17 17 C 1.31221 * 109.85907 * 0.45090 * 16 15 4 18 18 N 1.38581 * 126.47077 * 179.82012 * 17 16 15 19 19 C 1.46846 * 110.99767 * 294.92328 * 18 17 16 20 20 C 1.53044 * 109.51829 * 185.83801 * 19 18 17 21 21 C 1.53114 * 109.27966 * 300.81849 * 20 19 18 22 22 C 1.52996 * 109.52404 * 177.56099 * 21 20 19 23 23 O 1.42901 * 109.47556 * 178.97695 * 22 21 20 24 24 O 1.42899 * 109.52519 * 297.69025 * 21 20 19 25 25 C 1.42908 * 113.99708 * 302.46941 * 24 21 20 26 26 C 1.53121 * 109.21285 * 57.62541 * 21 20 19 27 27 C 1.46842 * 110.99689 * 59.13124 * 18 17 16 28 28 H 1.08992 * 109.47828 * 306.53172 * 1 2 3 29 29 H 1.09007 * 109.47224 * 66.53299 * 1 2 3 30 30 H 1.09002 * 109.47001 * 186.52631 * 1 2 3 31 31 H 1.08999 * 109.47688 * 239.99765 * 2 1 3 32 32 H 1.09005 * 109.46903 * 119.99348 * 2 1 3 33 33 H 1.09004 * 109.47298 * 209.99522 * 5 4 3 34 34 H 1.08997 * 109.47222 * 330.00015 * 5 4 3 35 35 H 1.09004 * 109.46730 * 300.00117 * 6 5 4 36 36 H 1.09005 * 109.46892 * 59.99705 * 6 5 4 37 37 H 0.97003 * 119.99798 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46534 * 65.82894 * 19 18 17 39 39 H 1.08997 * 109.46141 * 305.85237 * 19 18 17 40 40 H 1.09002 * 109.50043 * 180.87732 * 20 19 18 41 41 H 1.08998 * 109.50364 * 60.76734 * 20 19 18 42 42 H 1.08999 * 109.47048 * 298.97526 * 22 21 20 43 43 H 1.09003 * 109.47157 * 58.97099 * 22 21 20 44 44 H 0.96693 * 114.00377 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.46629 * 305.94821 * 25 24 21 46 46 H 1.08999 * 109.46930 * 65.95166 * 25 24 21 47 47 H 1.09001 * 109.46812 * 185.94877 * 25 24 21 48 48 H 1.09003 * 109.50348 * 62.31817 * 26 21 20 49 49 H 1.08999 * 109.50265 * 182.43756 * 26 21 20 50 50 H 1.09000 * 109.46829 * 294.17649 * 27 18 17 51 51 H 1.08994 * 109.46435 * 54.15764 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3924 2.1246 -1.0850 5 6 2.3819 1.6739 -2.5229 6 6 1.0243 1.9988 -3.1494 7 6 1.0136 1.5476 -4.5872 8 1 1.8878 1.0766 -5.0118 9 6 -0.1118 1.7371 -5.3608 10 7 -1.1762 2.3111 -4.8438 11 14 -0.1254 1.1771 -7.1429 12 1 0.1091 -0.2881 -7.2031 13 1 -1.4429 1.4925 -7.7509 14 1 0.9469 1.8811 -7.8911 15 7 2.7603 3.2946 -0.6450 16 7 2.6395 3.3425 0.6337 17 6 2.1935 2.1930 1.0827 18 7 1.9423 1.8671 2.4060 19 6 3.1825 1.8663 3.1923 20 6 2.8903 1.3628 4.6077 21 6 1.8488 2.2737 5.2634 22 6 1.5075 1.7404 6.6561 23 8 0.5532 2.6045 7.2765 24 8 2.3748 3.5977 5.3747 25 6 3.5955 3.6779 6.1133 26 6 0.5844 2.2964 4.4001 27 6 0.9437 2.7714 2.9902 28 1 -0.3634 0.6117 0.8257 29 1 -0.3634 0.4093 -0.9427 30 1 -0.3633 -1.0210 0.1168 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1686 2.1917 -3.0718 34 1 2.5548 0.5987 -2.5680 35 1 0.2377 1.4810 -2.6006 36 1 0.8514 3.0741 -3.1043 37 1 -1.9681 2.4440 -5.3880 38 1 3.5814 2.8795 3.2425 39 1 3.9132 1.2115 2.7175 40 1 3.8080 1.3771 5.1957 41 1 2.5044 0.3446 4.5593 42 1 1.0873 0.7385 6.5686 43 1 2.4123 1.7031 7.2628 44 1 0.2904 2.3270 8.1647 45 1 3.4601 3.2142 7.0904 46 1 4.3839 3.1570 5.5700 47 1 3.8737 4.7239 6.2430 48 1 0.1610 1.2933 4.3483 49 1 -0.1443 2.9774 4.8398 50 1 1.3531 3.7803 3.0413 51 1 0.0483 2.7738 2.3688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342845685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:30 Heat of formation + Delta-G solvation = -15.558225 kcal Electronic energy + Delta-G solvation = -30973.758178 eV Core-core repulsion = 26909.725494 eV Total energy + Delta-G solvation = -4064.032684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56229 -40.38410 -37.44215 -36.40016 -35.42711 -34.04356 -32.92213 -31.58460 -31.29930 -30.18141 -28.73988 -27.12260 -26.89446 -25.17867 -23.83429 -23.45098 -22.69939 -21.83215 -20.71588 -19.86299 -19.56906 -17.75299 -17.32206 -16.67147 -16.38329 -16.14680 -15.82574 -15.75655 -15.63044 -14.68804 -14.46479 -14.40275 -14.18828 -14.04151 -13.73565 -13.30022 -13.07349 -12.98884 -12.83434 -12.68886 -12.56056 -12.37789 -12.25471 -12.01438 -11.59892 -11.36719 -11.31311 -11.29478 -11.09937 -10.98545 -10.93623 -10.69956 -10.57654 -10.31140 -10.23149 -9.94909 -9.82816 -9.74198 -9.67436 -9.22318 -8.69452 -8.39819 -8.36225 -6.04361 -4.08486 2.13819 2.57238 3.31231 3.31738 3.36452 3.37097 3.38816 3.76192 3.88658 4.32887 4.35248 4.41833 4.66453 4.81697 4.83721 4.91427 4.95047 5.02368 5.05826 5.08546 5.16946 5.20421 5.24205 5.28688 5.31460 5.34199 5.47107 5.49950 5.50593 5.58626 5.63513 5.71231 5.79721 5.82894 5.87220 5.95304 6.13560 6.33096 6.38670 6.44697 6.50769 6.71133 6.71780 6.98679 7.00838 7.22594 7.54442 7.58640 7.71076 7.93241 8.30657 8.97335 9.22750 9.55896 11.06617 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002407 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.915433 B =11631.960092 C =11935.358424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.463 5.463 4 C 0.216 3.784 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 N -0.300 5.300 16 N -0.311 5.311 17 C 0.320 3.680 18 N -0.459 5.459 19 C 0.074 3.926 20 C -0.140 4.140 21 C 0.119 3.881 22 C 0.053 3.947 23 O -0.558 6.558 24 O -0.361 6.361 25 C 0.026 3.974 26 C -0.094 4.094 27 C 0.069 3.931 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.017 0.983 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.376 0.624 45 H 0.040 0.960 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -7.169 25.980 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.156 5.156 4 C -0.051 4.051 5 C -0.072 4.072 6 C -0.006 4.006 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 N -0.139 5.139 16 N -0.155 5.155 17 C -0.036 4.036 18 N -0.184 5.184 19 C -0.054 4.054 20 C -0.178 4.178 21 C 0.079 3.921 22 C -0.025 4.025 23 O -0.362 6.362 24 O -0.279 6.279 25 C -0.071 4.071 26 C -0.132 4.132 27 C -0.058 4.058 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.222 0.778 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.421 -5.697 25.310 26.726 hybrid contribution -0.174 -1.500 -0.199 1.523 sum 6.247 -7.197 25.111 26.858 Atomic orbital electron populations 1.22149 0.93632 1.02790 1.04052 1.21753 0.96246 0.78883 1.04037 1.46432 1.49069 1.13754 1.06346 1.25621 0.98334 0.88715 0.92473 1.20453 1.03804 1.00133 0.82773 1.19088 0.88569 0.97909 0.95003 1.21101 0.99475 1.39868 0.95847 0.92386 1.25003 0.95581 0.95099 0.98514 1.69961 1.03657 1.42775 1.36636 0.86628 0.77244 0.79085 0.84871 1.20227 1.21296 1.20094 1.74061 1.20816 1.16762 1.02310 1.74505 1.18429 1.17991 1.04525 1.22060 1.05309 0.88278 0.87951 1.58562 1.11480 1.52371 0.96037 1.21959 0.89934 1.01622 0.91884 1.22172 0.99446 1.00410 0.95786 1.21594 0.94250 0.83682 0.92607 1.22768 0.92004 0.93320 0.94443 1.86579 1.62352 1.53012 1.34293 1.88067 1.39187 1.26368 1.74314 1.22775 0.86694 1.02739 0.94883 1.21544 0.95591 1.03077 0.92952 1.22079 0.94412 0.94825 0.94480 0.92100 0.90543 0.90836 0.88663 0.89224 0.89352 0.91272 0.96506 0.95701 0.92814 0.92304 0.90660 0.90447 0.89660 0.92592 0.93436 0.77758 0.94132 0.93982 0.89660 0.89885 0.89272 0.91868 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.52 6.79 -4.04 -0.03 1.49 16 3 N -0.46 -7.94 2.81 -114.08 -0.32 -8.26 16 4 C 0.22 4.37 7.32 -154.01 -1.13 3.24 16 5 C -0.03 -0.65 5.51 -27.88 -0.15 -0.81 16 6 C 0.03 0.82 4.95 -27.88 -0.14 0.69 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 11 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 N -0.30 -6.68 12.18 32.99 0.40 -6.28 16 16 N -0.31 -6.40 12.17 30.32 0.37 -6.04 16 17 C 0.32 5.53 6.42 -318.87 -2.05 3.48 16 18 N -0.46 -6.17 4.67 -174.54 -0.82 -6.99 16 19 C 0.07 0.84 5.26 -3.83 -0.02 0.82 16 20 C -0.14 -1.15 4.51 -26.65 -0.12 -1.27 16 21 C 0.12 1.09 0.49 -90.50 -0.04 1.05 16 22 C 0.05 0.37 5.63 37.16 0.21 0.58 16 23 O -0.56 -4.47 12.97 -45.70 -0.59 -5.07 16 24 O -0.36 -4.10 9.09 -45.70 -0.42 -4.52 16 25 C 0.03 0.21 10.16 101.05 1.03 1.24 16 26 C -0.09 -0.97 4.94 -26.64 -0.13 -1.10 16 27 C 0.07 0.92 5.22 -3.83 -0.02 0.90 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.29 6.87 -51.93 -0.36 0.94 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.21 7.10 -51.93 -0.37 0.84 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 34 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 35 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.51 6.52 -51.93 -0.34 0.17 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 0.27 6.53 -51.93 -0.34 -0.07 16 44 H 0.38 1.27 9.12 45.56 0.42 1.68 16 45 H 0.04 0.28 6.24 -51.93 -0.32 -0.05 16 46 H 0.04 0.31 6.66 -51.93 -0.35 -0.04 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 0.98 7.80 -51.93 -0.40 0.58 16 50 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 51 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -34.78 402.00 -10.01 -44.80 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.79 Total: 0.47 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.63 Total: -4.63 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.37 Total: -53.29 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.01 Total: -9.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.78 -10.01 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342845685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.237 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds