Wall clock time and date at job start Tue Mar 31 2020 21:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46936 * 2 1 4 4 C 1.36741 * 127.13871 * 264.47168 * 3 2 1 5 5 C 1.50693 * 126.34559 * 359.94637 * 4 3 2 6 6 C 1.53006 * 109.47352 * 89.99753 * 5 4 3 7 7 C 1.50693 * 109.47352 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00029 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99875 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00199 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00013 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46807 * 59.99254 * 11 9 7 13 13 H 1.48496 * 109.47239 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46845 * 299.99845 * 11 9 7 15 15 N 1.30300 * 107.30564 * 179.97438 * 4 3 2 16 16 N 1.28529 * 110.05337 * 359.73021 * 15 4 3 17 17 C 1.31221 * 109.85907 * 0.45090 * 16 15 4 18 18 N 1.38581 * 126.47077 * 179.82012 * 17 16 15 19 19 C 1.46846 * 110.99767 * 294.92328 * 18 17 16 20 20 C 1.53044 * 109.51829 * 185.83801 * 19 18 17 21 21 C 1.53114 * 109.27966 * 300.81849 * 20 19 18 22 22 C 1.52996 * 109.52404 * 177.56099 * 21 20 19 23 23 O 1.42901 * 109.47556 * 178.97695 * 22 21 20 24 24 O 1.42899 * 109.52519 * 297.69025 * 21 20 19 25 25 C 1.42908 * 113.99708 * 302.46941 * 24 21 20 26 26 C 1.53121 * 109.21285 * 57.62541 * 21 20 19 27 27 C 1.46842 * 110.99689 * 59.13124 * 18 17 16 28 28 H 1.08992 * 109.47828 * 306.53172 * 1 2 3 29 29 H 1.09007 * 109.47224 * 66.53299 * 1 2 3 30 30 H 1.09002 * 109.47001 * 186.52631 * 1 2 3 31 31 H 1.08999 * 109.47688 * 239.99765 * 2 1 3 32 32 H 1.09005 * 109.46903 * 119.99348 * 2 1 3 33 33 H 1.09004 * 109.47298 * 209.99522 * 5 4 3 34 34 H 1.08997 * 109.47222 * 330.00015 * 5 4 3 35 35 H 1.09004 * 109.46730 * 300.00117 * 6 5 4 36 36 H 1.09005 * 109.46892 * 59.99705 * 6 5 4 37 37 H 0.97003 * 119.99798 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46534 * 65.82894 * 19 18 17 39 39 H 1.08997 * 109.46141 * 305.85237 * 19 18 17 40 40 H 1.09002 * 109.50043 * 180.87732 * 20 19 18 41 41 H 1.08998 * 109.50364 * 60.76734 * 20 19 18 42 42 H 1.08999 * 109.47048 * 298.97526 * 22 21 20 43 43 H 1.09003 * 109.47157 * 58.97099 * 22 21 20 44 44 H 0.96693 * 114.00377 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.46629 * 305.94821 * 25 24 21 46 46 H 1.08999 * 109.46930 * 65.95166 * 25 24 21 47 47 H 1.09001 * 109.46812 * 185.94877 * 25 24 21 48 48 H 1.09003 * 109.50348 * 62.31817 * 26 21 20 49 49 H 1.08999 * 109.50265 * 182.43756 * 26 21 20 50 50 H 1.09000 * 109.46829 * 294.17649 * 27 18 17 51 51 H 1.08994 * 109.46435 * 54.15764 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3924 2.1246 -1.0850 5 6 2.3819 1.6739 -2.5229 6 6 1.0243 1.9988 -3.1494 7 6 1.0136 1.5476 -4.5872 8 1 1.8878 1.0766 -5.0118 9 6 -0.1118 1.7371 -5.3608 10 7 -1.1762 2.3111 -4.8438 11 14 -0.1254 1.1771 -7.1429 12 1 0.1091 -0.2881 -7.2031 13 1 -1.4429 1.4925 -7.7509 14 1 0.9469 1.8811 -7.8911 15 7 2.7603 3.2946 -0.6450 16 7 2.6395 3.3425 0.6337 17 6 2.1935 2.1930 1.0827 18 7 1.9423 1.8671 2.4060 19 6 3.1825 1.8663 3.1923 20 6 2.8903 1.3628 4.6077 21 6 1.8488 2.2737 5.2634 22 6 1.5075 1.7404 6.6561 23 8 0.5532 2.6045 7.2765 24 8 2.3748 3.5977 5.3747 25 6 3.5955 3.6779 6.1133 26 6 0.5844 2.2964 4.4001 27 6 0.9437 2.7714 2.9902 28 1 -0.3634 0.6117 0.8257 29 1 -0.3634 0.4093 -0.9427 30 1 -0.3633 -1.0210 0.1168 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1686 2.1917 -3.0718 34 1 2.5548 0.5987 -2.5680 35 1 0.2377 1.4810 -2.6006 36 1 0.8514 3.0741 -3.1043 37 1 -1.9681 2.4440 -5.3880 38 1 3.5814 2.8795 3.2425 39 1 3.9132 1.2115 2.7175 40 1 3.8080 1.3771 5.1957 41 1 2.5044 0.3446 4.5593 42 1 1.0873 0.7385 6.5686 43 1 2.4123 1.7031 7.2628 44 1 0.2904 2.3270 8.1647 45 1 3.4601 3.2142 7.0904 46 1 4.3839 3.1570 5.5700 47 1 3.8737 4.7239 6.2430 48 1 0.1610 1.2933 4.3483 49 1 -0.1443 2.9774 4.8398 50 1 1.3531 3.7803 3.0413 51 1 0.0483 2.7738 2.3688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342845685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:29 Heat of formation + Delta-G solvation = -39.083501 kcal Electronic energy + Delta-G solvation = -30974.778311 eV Core-core repulsion = 26909.725494 eV Total energy + Delta-G solvation = -4065.052817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.03747 -41.18247 -38.37260 -37.00487 -36.83055 -35.86577 -34.14194 -33.22257 -32.17773 -31.46025 -30.22998 -28.02694 -27.68649 -26.99210 -25.03544 -24.34408 -23.88724 -23.52049 -21.88176 -21.27642 -20.53328 -18.76217 -18.35808 -18.18406 -17.66530 -17.14705 -16.94624 -16.70668 -16.49719 -16.37118 -15.71823 -15.64125 -15.18280 -15.06622 -14.72752 -14.67516 -14.35856 -14.21432 -14.04281 -13.75839 -13.50818 -13.36094 -13.25622 -13.19114 -13.06820 -12.84504 -12.61256 -12.46547 -12.41558 -12.31559 -12.22253 -12.00873 -11.84849 -11.77554 -11.55066 -11.31054 -11.22957 -11.08186 -10.85653 -10.55154 -10.42224 -9.99756 -9.88349 -8.19291 -6.31711 0.69179 1.25799 1.43483 1.46852 1.54304 1.75065 2.42615 2.60321 2.78806 3.14886 3.32151 3.46272 3.57242 3.62770 3.72496 3.99535 4.01854 4.06285 4.10930 4.13931 4.25557 4.34805 4.36258 4.42213 4.42630 4.51428 4.54596 4.57224 4.59496 4.64412 4.69850 4.72022 4.75821 4.80309 4.86217 4.88179 4.93641 5.01492 5.07655 5.15530 5.18504 5.19900 5.48231 5.57516 5.61667 5.65521 5.79917 6.16187 6.22638 6.35383 6.84074 6.95193 7.38183 7.69428 8.92567 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002407 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.915433 B =11631.960092 C =11935.358424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -0.458 5.458 4 C 0.202 3.798 5 C -0.016 4.016 6 C 0.044 3.956 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.968 3.032 12 H -0.259 1.259 13 H -0.288 1.288 14 H -0.268 1.268 15 N -0.337 5.337 16 N -0.350 5.350 17 C 0.339 3.661 18 N -0.443 5.443 19 C 0.072 3.928 20 C -0.129 4.129 21 C 0.111 3.889 22 C 0.056 3.944 23 O -0.584 6.584 24 O -0.395 6.395 25 C 0.022 3.978 26 C -0.085 4.085 27 C 0.074 3.926 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.000 1.000 36 H -0.022 1.022 37 H 0.263 0.737 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.395 0.605 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.032 0.968 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -10.582 27.483 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.150 5.150 4 C -0.066 4.066 5 C -0.056 4.056 6 C 0.006 3.994 7 C -0.577 4.577 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.184 1.184 13 H -0.214 1.214 14 H -0.193 1.193 15 N -0.177 5.177 16 N -0.194 5.194 17 C -0.019 4.019 18 N -0.169 5.169 19 C -0.055 4.055 20 C -0.167 4.167 21 C 0.072 3.928 22 C -0.021 4.021 23 O -0.392 6.392 24 O -0.315 6.315 25 C -0.074 4.074 26 C -0.123 4.123 27 C -0.054 4.054 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.018 0.982 36 H -0.004 1.004 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.245 0.755 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.122 0.878 49 H 0.097 0.903 50 H 0.051 0.949 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.350 -9.137 26.841 29.291 hybrid contribution -0.497 -0.392 -0.557 0.843 sum 6.853 -9.529 26.284 28.786 Atomic orbital electron populations 1.22083 0.93829 1.04491 1.01401 1.22162 0.95980 0.76962 1.06358 1.46625 1.48224 1.14925 1.05271 1.25411 0.99325 0.88914 0.92993 1.20176 1.00655 1.01899 0.82825 1.18847 0.90964 0.94530 0.95078 1.21561 0.99953 1.39522 0.96658 0.90885 1.25993 0.95121 0.95073 1.03496 1.70123 1.04471 1.44285 1.38561 0.85463 0.77179 0.79425 0.78761 1.18377 1.21390 1.19340 1.73946 1.22186 1.18191 1.03420 1.74424 1.20720 1.20143 1.04064 1.22506 1.02594 0.87319 0.89461 1.58901 1.12443 1.51302 0.94280 1.22075 0.88916 1.00667 0.93870 1.22156 1.00420 1.00927 0.93176 1.21739 0.93647 0.83300 0.94128 1.22743 0.92799 0.93693 0.92908 1.86530 1.62743 1.53963 1.35919 1.88029 1.40432 1.27927 1.75108 1.22890 0.85902 1.03028 0.95579 1.21501 0.96462 1.03685 0.90664 1.22012 0.93398 0.93592 0.96367 0.92661 0.94750 0.87299 0.87560 0.85630 0.89421 0.88278 0.98175 1.00399 0.92843 0.94780 0.90028 0.88112 0.87372 0.90441 0.91704 0.75548 0.92304 0.93237 0.89996 0.87795 0.90282 0.94928 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 10.24 71.98 0.74 -3.42 16 2 C 0.11 2.62 6.79 86.38 0.59 3.20 16 3 N -0.46 -15.65 2.81 -514.85 -1.45 -17.09 16 4 C 0.20 8.41 7.32 137.63 1.01 9.42 16 5 C -0.02 -0.66 5.51 29.85 0.16 -0.50 16 6 C 0.04 2.33 4.95 29.85 0.15 2.48 16 7 C -0.54 -29.69 9.11 25.60 0.23 -29.45 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.00 0.07 5.46 84.66 0.46 0.53 16 10 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 11 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 15 N -0.34 -15.77 12.18 -49.54 -0.60 -16.37 16 16 N -0.35 -15.11 12.17 -58.00 -0.71 -15.81 16 17 C 0.34 11.83 6.42 260.11 1.67 13.50 16 18 N -0.44 -11.61 4.67 -706.14 -3.30 -14.91 16 19 C 0.07 1.55 5.26 86.33 0.45 2.00 16 20 C -0.13 -1.69 4.51 30.65 0.14 -1.55 16 21 C 0.11 1.81 0.49 -10.72 -0.01 1.80 16 22 C 0.06 0.59 5.63 71.98 0.41 1.00 16 23 O -0.58 -7.98 12.97 -138.97 -1.80 -9.79 16 24 O -0.40 -8.72 9.09 -138.97 -1.26 -9.98 16 25 C 0.02 0.33 10.16 113.37 1.15 1.48 16 26 C -0.09 -1.67 4.94 30.65 0.15 -1.52 16 27 C 0.07 2.00 5.22 86.33 0.45 2.45 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.03 1.18 6.87 -2.38 -0.02 1.16 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.11 2.42 7.10 -2.39 -0.02 2.41 16 32 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.09 3.64 8.14 -2.38 -0.02 3.62 16 34 H 0.10 3.49 7.18 -2.39 -0.02 3.47 16 35 H 0.00 0.00 6.87 -2.38 -0.02 -0.02 16 36 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.03 0.92 7.76 -2.39 -0.02 0.90 16 39 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.10 0.92 6.52 -2.39 -0.02 0.90 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 43 H 0.06 0.47 6.53 -2.39 -0.02 0.45 16 44 H 0.39 1.65 9.12 -74.06 -0.68 0.98 16 45 H 0.06 0.65 6.24 -2.39 -0.01 0.63 16 46 H 0.05 0.65 6.66 -2.39 -0.02 0.63 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.08 1.72 7.80 -2.39 -0.02 1.70 16 50 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 51 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -80.39 402.00 1.20 -79.19 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.25 Total: 14.72 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 7.76 Total: 1.43 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.77 Total: -120.98 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -3.06 Total: -19.77 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -80.39 1.20 -79.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342845685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.107 kcal (2) G-P(sol) polarization free energy of solvation -80.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds