Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47023 * 2 1 4 4 C 1.42905 * 113.99522 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46869 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.50662 * 54.90968 * 5 4 3 7 7 C 1.53095 * 109.50406 * 175.00065 * 5 4 3 8 8 N 1.47021 * 109.25616 * 176.82663 * 7 5 4 9 9 C 1.38574 * 110.99909 * 177.60542 * 8 7 5 10 10 N 1.31222 * 126.47096 * 35.96832 * 9 8 7 11 11 N 1.28535 * 109.85670 * 179.81876 * 10 9 8 12 12 C 1.30288 * 110.05554 * 0.45484 * 11 10 9 13 13 C 1.50695 * 126.35075 * 179.69290 * 12 11 10 14 14 C 1.53003 * 109.46994 * 270.04229 * 13 12 11 15 15 C 1.50703 * 109.47045 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99887 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99881 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00161 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47725 * 119.99736 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00333 * 19 17 15 23 23 N 1.36450 * 126.47356 * 216.27573 * 9 8 7 24 24 C 1.46492 * 127.13702 * 359.97438 * 23 9 8 25 25 C 1.53001 * 109.47384 * 84.80211 * 24 23 9 26 26 C 1.47012 * 110.75221 * 301.38349 * 8 7 5 27 27 C 1.53096 * 109.25784 * 58.61471 * 26 8 7 28 28 O 1.43015 * 109.53888 * 294.80483 * 5 4 3 29 29 H 1.09002 * 109.47110 * 59.99815 * 1 2 3 30 30 H 1.08992 * 109.47637 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46850 * 300.00326 * 1 2 3 32 32 H 1.09003 * 109.46868 * 240.00193 * 2 1 3 33 33 H 1.09002 * 109.47110 * 120.00185 * 2 1 3 34 34 H 1.08999 * 109.46982 * 60.00047 * 4 3 2 35 35 H 1.08997 * 109.47204 * 299.99906 * 4 3 2 36 36 H 1.08998 * 109.50853 * 296.76076 * 7 5 4 37 37 H 1.09002 * 109.50726 * 56.89237 * 7 5 4 38 38 H 1.08999 * 109.47368 * 30.03467 * 13 12 11 39 39 H 1.09001 * 109.47411 * 150.04119 * 13 12 11 40 40 H 1.09003 * 109.47244 * 299.99411 * 14 13 12 41 41 H 1.08994 * 109.47453 * 59.99707 * 14 13 12 42 42 H 0.96999 * 119.99749 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47233 * 204.80815 * 24 23 9 44 44 H 1.09002 * 109.47084 * 324.80141 * 24 23 9 45 45 H 1.08992 * 109.47361 * 299.99968 * 25 24 23 46 46 H 1.08998 * 109.46888 * 60.00640 * 25 24 23 47 47 H 1.09003 * 109.47380 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.50611 * 298.67932 * 26 8 7 49 49 H 1.08999 * 109.50339 * 178.54999 * 26 8 7 50 50 H 1.09006 * 109.50648 * 183.21495 * 27 26 8 51 51 H 1.09002 * 109.50673 * 63.08955 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3491 3.4418 0.8413 7 6 5.3463 3.0614 0.1253 8 7 5.7259 4.4797 0.0489 9 6 7.0930 4.6374 0.2121 10 7 8.0290 3.8267 -0.2221 11 7 9.1862 4.2821 0.1030 12 6 9.0578 5.3958 0.7667 13 6 10.1764 6.2350 1.3283 14 6 10.4931 5.7752 2.7529 15 6 11.6122 6.6139 3.3143 16 1 12.0531 7.3969 2.7153 17 6 12.0725 6.3824 4.5932 18 7 11.5345 5.4299 5.3233 19 14 13.4591 7.4225 5.2895 20 1 13.8874 8.4193 4.2755 21 1 12.9857 8.1273 6.5078 22 1 14.6071 6.5475 5.6383 23 7 7.7197 5.6619 0.8598 24 6 7.0898 6.8091 1.5179 25 6 6.6905 6.4234 2.9436 26 6 5.2749 5.0721 -1.2187 27 6 3.7547 4.9288 -1.3304 28 8 3.4019 3.5470 -1.2228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 5.6673 2.6497 1.0821 37 1 5.8239 2.5126 -0.6864 38 1 11.0633 6.1226 0.7048 39 1 9.8731 7.2818 1.3434 40 1 9.6063 5.8876 3.3766 41 1 10.7965 4.7284 2.7378 42 1 11.8585 5.2668 6.2229 43 1 7.7934 7.6410 1.5500 44 1 6.2018 7.1058 0.9596 45 1 5.9868 5.5916 2.9115 46 1 7.5784 6.1269 3.5019 47 1 6.2222 7.2772 3.4334 48 1 5.7514 4.5554 -2.0519 49 1 5.5437 6.1282 -1.2428 50 1 3.4225 5.3153 -2.2940 51 1 3.2763 5.4902 -0.5278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342848050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = -14.620489 kcal Electronic energy + Delta-G solvation = -30141.718284 eV Core-core repulsion = 26077.726263 eV Total energy + Delta-G solvation = -4063.992021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.68587 -40.00190 -38.10523 -36.04335 -35.53059 -33.92687 -32.93182 -31.80170 -31.08982 -30.31780 -29.32285 -27.63235 -25.72252 -25.25272 -23.92292 -23.13832 -23.07108 -22.00477 -21.27375 -20.31625 -19.73691 -17.48120 -17.18663 -16.96959 -16.57346 -16.20507 -16.04681 -15.73958 -15.39172 -15.05327 -14.86402 -14.59025 -14.41488 -14.16257 -13.75490 -13.54134 -13.31061 -13.12889 -12.89054 -12.86947 -12.41749 -12.33549 -12.07540 -11.83145 -11.80386 -11.65208 -11.38250 -11.29821 -11.26632 -11.09963 -11.00829 -10.89302 -10.70649 -10.43717 -10.07504 -9.94297 -9.89990 -9.87577 -9.76598 -9.24062 -9.08773 -8.44043 -8.29258 -6.08479 -4.12476 2.01940 2.37461 3.18845 3.22879 3.26504 3.34691 3.37956 3.39576 3.69885 4.38504 4.51227 4.58382 4.64646 4.72463 4.73396 4.80743 4.89616 4.92892 4.96007 5.03315 5.07065 5.10639 5.11312 5.21018 5.25932 5.27709 5.30092 5.33816 5.41900 5.47383 5.55320 5.58270 5.61091 5.75619 5.78017 5.80183 5.87257 6.20721 6.31248 6.33935 6.42117 6.44833 6.63283 6.82649 6.87066 6.93468 7.38174 7.54329 7.65724 7.89081 8.26281 8.93723 9.11212 9.52221 11.02566 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.002234 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.821880 B =12529.078220 C =13062.054627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.072 3.928 5 C 0.099 3.901 6 H 0.078 0.922 7 C 0.043 3.957 8 N -0.453 5.453 9 C 0.320 3.680 10 N -0.314 5.314 11 N -0.297 5.297 12 C 0.218 3.782 13 C -0.032 4.032 14 C 0.031 3.969 15 C -0.523 4.523 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.465 5.465 24 C 0.113 3.887 25 C -0.169 4.169 26 C 0.023 3.977 27 C 0.068 3.932 28 O -0.370 6.370 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.025 0.975 42 H 0.261 0.739 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 -2.990 -10.871 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.005 4.005 5 C 0.040 3.960 6 H 0.096 0.904 7 C -0.085 4.085 8 N -0.178 5.178 9 C -0.036 4.036 10 N -0.158 5.158 11 N -0.137 5.137 12 C -0.049 4.049 13 C -0.072 4.072 14 C -0.007 4.007 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.158 5.158 24 C -0.010 4.010 25 C -0.227 4.227 26 C -0.105 4.105 27 C -0.009 4.009 28 O -0.288 6.288 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.122 0.878 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.535 -3.931 -11.141 24.562 hybrid contribution 0.847 1.148 0.832 1.652 sum -20.688 -2.784 -10.308 23.281 Atomic orbital electron populations 1.21732 0.93699 1.02167 1.03192 1.22473 0.95669 0.83755 1.00137 1.87923 1.20295 1.26334 1.95450 1.22392 0.82138 0.94526 1.01447 1.22105 0.92239 0.93177 0.88438 0.90425 1.22614 0.95182 0.86486 1.04253 1.58717 1.06444 1.17881 1.34780 1.22050 0.90722 0.90164 1.00675 1.74483 0.95239 1.24653 1.21415 1.74046 1.15667 1.08297 1.15674 1.25650 0.83659 0.96503 0.99062 1.20473 0.91056 0.95279 1.00387 1.19107 0.96884 0.97602 0.87087 1.21165 1.18197 1.17616 0.99171 0.92254 1.25014 0.96880 0.95321 0.97080 1.69981 1.41954 1.31080 1.09996 0.86502 0.82074 0.80261 0.78965 1.19629 1.21033 1.20932 1.46378 1.07108 1.20637 1.41679 1.21783 0.98464 0.86318 0.94414 1.22148 1.03307 1.02459 0.94751 1.22950 0.97287 1.00774 0.89476 1.22663 0.92130 0.83235 1.02874 1.88062 1.78991 1.23608 1.38174 0.91798 0.91149 0.91858 0.93324 0.93366 0.92107 0.91373 0.88875 0.91302 0.89266 0.91192 0.96460 0.95679 0.92914 0.88494 0.89466 0.91951 0.90480 0.90705 0.92315 0.89544 0.87768 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.06 10.31 -39.69 -0.41 -4.47 16 4 C 0.07 0.69 5.61 37.16 0.21 0.90 16 5 C 0.10 1.05 3.08 -26.68 -0.08 0.97 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.04 0.52 4.61 -3.71 -0.02 0.50 16 8 N -0.45 -5.89 4.74 -174.20 -0.83 -6.71 16 9 C 0.32 5.30 6.76 -318.88 -2.15 3.14 16 10 N -0.31 -6.17 11.63 30.31 0.35 -5.82 16 11 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16 12 C 0.22 4.28 7.32 -154.01 -1.13 3.16 16 13 C -0.03 -0.64 5.52 -27.88 -0.15 -0.80 16 14 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 15 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 N -0.46 -7.68 2.81 -114.09 -0.32 -8.00 16 24 C 0.11 1.45 6.79 -4.05 -0.03 1.42 16 25 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 26 C 0.02 0.25 5.58 -3.71 -0.02 0.23 16 27 C 0.07 0.62 7.01 37.21 0.26 0.88 16 28 O -0.37 -4.22 10.44 -39.69 -0.41 -4.64 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 40 H 0.02 0.44 6.81 -51.93 -0.35 0.09 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.10 1.17 7.11 -51.93 -0.37 0.81 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 1.29 6.81 -51.93 -0.35 0.94 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -33.35 413.68 -10.93 -44.29 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -9.01 Total: -1.87 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.65 Total: -3.58 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.34 Total: -51.93 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.82 Total: -9.10 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.35 -10.93 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342848050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.666 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds