Wall clock time and date at job start Tue Mar 31 2020 21:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47023 * 2 1 4 4 C 1.42905 * 113.99522 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46869 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.50662 * 54.90968 * 5 4 3 7 7 C 1.53095 * 109.50406 * 175.00065 * 5 4 3 8 8 N 1.47021 * 109.25616 * 176.82663 * 7 5 4 9 9 C 1.38574 * 110.99909 * 177.60542 * 8 7 5 10 10 N 1.31222 * 126.47096 * 35.96832 * 9 8 7 11 11 N 1.28535 * 109.85670 * 179.81876 * 10 9 8 12 12 C 1.30288 * 110.05554 * 0.45484 * 11 10 9 13 13 C 1.50695 * 126.35075 * 179.69290 * 12 11 10 14 14 C 1.53003 * 109.46994 * 270.04229 * 13 12 11 15 15 C 1.50703 * 109.47045 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99887 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99881 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00161 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47725 * 119.99736 * 19 17 15 22 22 H 1.48501 * 109.47027 * 240.00333 * 19 17 15 23 23 N 1.36450 * 126.47356 * 216.27573 * 9 8 7 24 24 C 1.46492 * 127.13702 * 359.97438 * 23 9 8 25 25 C 1.53001 * 109.47384 * 84.80211 * 24 23 9 26 26 C 1.47012 * 110.75221 * 301.38349 * 8 7 5 27 27 C 1.53096 * 109.25784 * 58.61471 * 26 8 7 28 28 O 1.43015 * 109.53888 * 294.80483 * 5 4 3 29 29 H 1.09002 * 109.47110 * 59.99815 * 1 2 3 30 30 H 1.08992 * 109.47637 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46850 * 300.00326 * 1 2 3 32 32 H 1.09003 * 109.46868 * 240.00193 * 2 1 3 33 33 H 1.09002 * 109.47110 * 120.00185 * 2 1 3 34 34 H 1.08999 * 109.46982 * 60.00047 * 4 3 2 35 35 H 1.08997 * 109.47204 * 299.99906 * 4 3 2 36 36 H 1.08998 * 109.50853 * 296.76076 * 7 5 4 37 37 H 1.09002 * 109.50726 * 56.89237 * 7 5 4 38 38 H 1.08999 * 109.47368 * 30.03467 * 13 12 11 39 39 H 1.09001 * 109.47411 * 150.04119 * 13 12 11 40 40 H 1.09003 * 109.47244 * 299.99411 * 14 13 12 41 41 H 1.08994 * 109.47453 * 59.99707 * 14 13 12 42 42 H 0.96999 * 119.99749 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47233 * 204.80815 * 24 23 9 44 44 H 1.09002 * 109.47084 * 324.80141 * 24 23 9 45 45 H 1.08992 * 109.47361 * 299.99968 * 25 24 23 46 46 H 1.08998 * 109.46888 * 60.00640 * 25 24 23 47 47 H 1.09003 * 109.47380 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.50611 * 298.67932 * 26 8 7 49 49 H 1.08999 * 109.50339 * 178.54999 * 26 8 7 50 50 H 1.09006 * 109.50648 * 183.21495 * 27 26 8 51 51 H 1.09002 * 109.50673 * 63.08955 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3491 3.4418 0.8413 7 6 5.3463 3.0614 0.1253 8 7 5.7259 4.4797 0.0489 9 6 7.0930 4.6374 0.2121 10 7 8.0290 3.8267 -0.2221 11 7 9.1862 4.2821 0.1030 12 6 9.0578 5.3958 0.7667 13 6 10.1764 6.2350 1.3283 14 6 10.4931 5.7752 2.7529 15 6 11.6122 6.6139 3.3143 16 1 12.0531 7.3969 2.7153 17 6 12.0725 6.3824 4.5932 18 7 11.5345 5.4299 5.3233 19 14 13.4591 7.4225 5.2895 20 1 13.8874 8.4193 4.2755 21 1 12.9857 8.1273 6.5078 22 1 14.6071 6.5475 5.6383 23 7 7.7197 5.6619 0.8598 24 6 7.0898 6.8091 1.5179 25 6 6.6905 6.4234 2.9436 26 6 5.2749 5.0721 -1.2187 27 6 3.7547 4.9288 -1.3304 28 8 3.4019 3.5470 -1.2228 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 5.6673 2.6497 1.0821 37 1 5.8239 2.5126 -0.6864 38 1 11.0633 6.1226 0.7048 39 1 9.8731 7.2818 1.3434 40 1 9.6063 5.8876 3.3766 41 1 10.7965 4.7284 2.7378 42 1 11.8585 5.2668 6.2229 43 1 7.7934 7.6410 1.5500 44 1 6.2018 7.1058 0.9596 45 1 5.9868 5.5916 2.9115 46 1 7.5784 6.1269 3.5019 47 1 6.2222 7.2772 3.4334 48 1 5.7514 4.5554 -2.0519 49 1 5.5437 6.1282 -1.2428 50 1 3.4225 5.3153 -2.2940 51 1 3.2763 5.4902 -0.5278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342848050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:50 Heat of formation + Delta-G solvation = -34.254786 kcal Electronic energy + Delta-G solvation = -30142.569691 eV Core-core repulsion = 26077.726263 eV Total energy + Delta-G solvation = -4064.843428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.09122 -40.91611 -38.85399 -37.08720 -36.87517 -35.74904 -33.71456 -33.62205 -31.75553 -31.52685 -30.73256 -28.80944 -27.15260 -26.58894 -25.08734 -24.02860 -23.80124 -23.65635 -22.44014 -21.42638 -21.15263 -18.77833 -18.35492 -18.04706 -17.72286 -17.46968 -17.20429 -16.56719 -16.46944 -16.24374 -16.00031 -15.91523 -15.65293 -15.25261 -14.88320 -14.73950 -14.50037 -14.22239 -14.20353 -14.05668 -13.49910 -13.39797 -13.15393 -13.10831 -12.91154 -12.73650 -12.57604 -12.48800 -12.48555 -12.39510 -12.27902 -12.01166 -11.89501 -11.85039 -11.71443 -11.57513 -11.28233 -11.15594 -10.86930 -10.59010 -10.57153 -10.36263 -9.68373 -8.20223 -6.32024 0.65014 1.14408 1.42510 1.44215 1.56630 1.70774 2.32160 2.42180 2.60607 2.78623 3.14317 3.41887 3.64372 3.66708 3.72279 3.85123 3.94122 3.98000 4.03827 4.09634 4.16780 4.19604 4.24545 4.27311 4.34308 4.40404 4.45940 4.50188 4.52056 4.58037 4.61166 4.67838 4.70756 4.77051 4.82596 4.87294 4.92639 4.95645 5.05394 5.09980 5.17216 5.28609 5.39125 5.46272 5.48698 5.61403 5.79790 6.05971 6.10139 6.17200 6.23021 6.84190 7.37828 7.65182 8.91936 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.002234 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.821880 B =12529.078220 C =13062.054627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.401 6.401 4 C 0.072 3.928 5 C 0.109 3.891 6 H 0.081 0.919 7 C 0.045 3.955 8 N -0.446 5.446 9 C 0.340 3.660 10 N -0.348 5.348 11 N -0.334 5.334 12 C 0.204 3.796 13 C -0.016 4.016 14 C 0.042 3.958 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.285 1.285 23 N -0.460 5.460 24 C 0.106 3.894 25 C -0.161 4.161 26 C 0.023 3.977 27 C 0.071 3.929 28 O -0.385 6.385 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.001 0.999 41 H -0.020 1.020 42 H 0.263 0.737 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.059 0.941 46 H 0.033 0.967 47 H 0.105 0.895 48 H 0.044 0.956 49 H 0.103 0.897 50 H 0.130 0.870 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.222 -1.017 -11.374 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.321 6.321 4 C -0.005 4.005 5 C 0.050 3.950 6 H 0.099 0.901 7 C -0.082 4.082 8 N -0.172 5.172 9 C -0.017 4.017 10 N -0.192 5.192 11 N -0.173 5.173 12 C -0.064 4.064 13 C -0.056 4.056 14 C 0.004 3.996 15 C -0.574 4.574 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.179 1.179 21 H -0.204 1.204 22 H -0.211 1.211 23 N -0.153 5.153 24 C -0.015 4.015 25 C -0.219 4.219 26 C -0.104 4.104 27 C -0.006 4.006 28 O -0.304 6.304 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.019 0.981 41 H -0.002 1.002 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.141 0.859 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.124 0.876 48 H 0.062 0.938 49 H 0.121 0.879 50 H 0.148 0.852 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.063 -1.941 -11.662 25.917 hybrid contribution 1.194 0.483 0.971 1.613 sum -21.868 -1.457 -10.691 24.386 Atomic orbital electron populations 1.21751 0.92792 1.03339 1.02687 1.22688 0.96467 0.82737 1.00904 1.87884 1.20528 1.28051 1.95604 1.22409 0.82090 0.93967 1.02071 1.22014 0.90573 0.93961 0.88434 0.90140 1.22600 0.96492 0.85878 1.03278 1.58981 1.03776 1.18405 1.36084 1.22423 0.91750 0.88993 0.98575 1.74400 0.95406 1.26144 1.23288 1.73938 1.17155 1.09327 1.16924 1.25399 0.84927 0.96377 0.99726 1.20182 0.91624 0.96731 0.97066 1.18870 0.95783 0.94876 0.90053 1.21611 1.18464 1.17816 0.99483 0.90919 1.25985 0.99600 0.96550 0.97651 1.70130 1.43785 1.33030 1.10447 0.85362 0.78376 0.78606 0.78475 1.17935 1.20392 1.21095 1.46544 1.06109 1.21426 1.41213 1.22173 0.99941 0.85197 0.94215 1.22076 1.01365 1.03616 0.94801 1.23086 0.98536 1.01251 0.87511 1.22854 0.90525 0.82342 1.04855 1.88057 1.78989 1.24953 1.38399 0.92388 0.89171 0.92225 0.92761 0.92388 0.92148 0.90145 0.89682 0.92671 0.89347 0.88304 0.98098 1.00199 0.92866 0.87380 0.85858 0.92227 0.94777 0.87620 0.93793 0.87876 0.85227 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -8.14 10.31 -144.72 -1.49 -9.63 16 4 C 0.07 1.32 5.61 71.98 0.40 1.73 16 5 C 0.11 2.19 3.08 30.63 0.09 2.29 16 6 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 7 C 0.05 1.09 4.61 86.31 0.40 1.49 16 8 N -0.45 -11.09 4.74 -705.06 -3.34 -14.43 16 9 C 0.34 11.15 6.76 260.11 1.76 12.91 16 10 N -0.35 -14.06 11.63 -58.01 -0.67 -14.74 16 11 N -0.33 -14.85 12.18 -49.54 -0.60 -15.46 16 12 C 0.20 8.14 7.32 137.64 1.01 9.14 16 13 C -0.02 -0.66 5.52 29.85 0.16 -0.50 16 14 C 0.04 2.19 4.96 29.85 0.15 2.34 16 15 C -0.54 -28.99 9.11 25.60 0.23 -28.76 16 16 H 0.07 3.66 7.74 -2.92 -0.02 3.64 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 19 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 N -0.46 -14.92 2.81 -514.87 -1.45 -16.36 16 24 C 0.11 2.47 6.79 86.38 0.59 3.06 16 25 C -0.16 -4.06 10.24 71.98 0.74 -3.33 16 26 C 0.02 0.45 5.58 86.31 0.48 0.93 16 27 C 0.07 1.08 7.01 72.01 0.50 1.59 16 28 O -0.39 -8.12 10.44 -144.72 -1.51 -9.64 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.49 7.96 -2.39 -0.02 1.47 16 38 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.10 3.36 7.18 -2.39 -0.02 3.34 16 40 H 0.00 0.04 6.81 -2.39 -0.02 0.02 16 41 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 42 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.11 2.33 7.11 -2.39 -0.02 2.31 16 44 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.03 1.16 6.81 -2.39 -0.02 1.14 16 47 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.83 413.68 2.33 -72.50 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.89 Total: 15.17 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 8.20 Total: 3.52 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -5.78 Total: -116.88 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -3.00 Total: -19.27 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.83 2.33 -72.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342848050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.248 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds