Wall clock time and date at job start Tue Mar 31 2020 21:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99742 * 2 1 4 4 C 1.50696 * 120.00056 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47180 * 96.55151 * 4 2 1 6 6 C 1.46898 * 111.00073 * 289.76987 * 5 4 2 7 7 C 1.52998 * 109.46964 * 290.16157 * 6 5 4 8 8 C 1.38582 * 110.99789 * 165.81381 * 5 4 2 9 9 N 1.31213 * 126.47415 * 18.38027 * 8 5 4 10 10 N 1.28532 * 109.85903 * 179.72745 * 9 8 5 11 11 C 1.30292 * 110.05146 * 0.45001 * 10 9 8 12 12 C 1.50704 * 126.34241 * 179.81769 * 11 10 9 13 13 C 1.53000 * 109.47468 * 269.69185 * 12 11 10 14 14 H 1.09002 * 109.46990 * 55.00393 * 13 12 11 15 15 O 1.42901 * 109.47126 * 295.00564 * 13 12 11 16 16 C 1.50698 * 109.47188 * 175.00392 * 13 12 11 17 17 H 1.08001 * 120.00091 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99846 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00007 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99680 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46918 * 90.00205 * 20 18 16 22 22 H 1.48502 * 109.46985 * 209.99878 * 20 18 16 23 23 H 1.48497 * 109.47081 * 330.00212 * 20 18 16 24 24 N 1.36451 * 126.47134 * 198.37786 * 8 5 4 25 25 C 1.46501 * 127.13944 * 359.97438 * 24 8 5 26 26 C 1.52997 * 109.47658 * 264.39366 * 25 24 8 27 27 O 1.42897 * 109.47677 * 181.31526 * 26 25 24 28 28 C 1.42897 * 114.00125 * 179.97438 * 27 26 25 29 29 H 1.07997 * 120.00522 * 5.21434 * 1 2 3 30 30 H 1.08004 * 119.99887 * 185.21952 * 1 2 3 31 31 H 1.08998 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46839 * 300.00206 * 3 2 1 33 33 H 1.08997 * 109.46827 * 60.00376 * 3 2 1 34 34 H 1.08998 * 109.47532 * 336.54928 * 4 2 1 35 35 H 1.09007 * 109.46607 * 216.55067 * 4 2 1 36 36 H 1.09004 * 109.47075 * 50.15877 * 6 5 4 37 37 H 1.08992 * 109.47160 * 170.16353 * 6 5 4 38 38 H 1.09003 * 109.47381 * 185.32584 * 7 6 5 39 39 H 1.09007 * 109.47393 * 305.33050 * 7 6 5 40 40 H 1.09006 * 109.47054 * 65.32922 * 7 6 5 41 41 H 1.08996 * 109.47171 * 29.69457 * 12 11 10 42 42 H 1.09001 * 109.46504 * 149.69349 * 12 11 10 43 43 H 0.96705 * 113.99678 * 299.99725 * 15 13 12 44 44 H 0.97000 * 119.99950 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46803 * 24.39591 * 25 24 8 46 46 H 1.08998 * 109.47482 * 144.38886 * 25 24 8 47 47 H 1.09006 * 109.46960 * 301.32197 * 26 25 24 48 48 H 1.09008 * 109.47076 * 61.31418 * 26 25 24 49 49 H 1.08994 * 109.47080 * 300.00396 * 28 27 26 50 50 H 1.08994 * 109.46680 * 60.00299 * 28 27 26 51 51 H 1.08997 * 109.47022 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4452 -1.6495 -1.3767 6 6 1.2682 -2.0263 -2.1708 7 6 0.7330 -3.3736 -1.6816 8 6 3.3970 -2.6566 -1.3907 9 7 3.6763 -3.4797 -0.4077 10 7 4.6076 -4.2892 -0.7672 11 6 4.9812 -4.0267 -1.9875 12 6 6.0493 -4.7474 -2.7691 13 6 7.3988 -4.0644 -2.5383 14 1 7.6024 -4.0142 -1.4687 15 8 7.3621 -2.7421 -3.0788 16 6 8.4853 -4.8557 -3.2198 17 1 8.2381 -5.7559 -3.7629 18 6 9.7951 -4.4309 -3.1492 19 7 10.0962 -3.3350 -2.4875 20 14 11.1420 -5.4122 -3.9933 21 1 11.3174 -4.9183 -5.3828 22 1 12.4150 -5.2500 -3.2460 23 1 10.7643 -6.8480 -4.0222 24 7 4.2208 -2.9797 -2.4294 25 6 4.2781 -2.3385 -3.7453 26 6 3.4176 -3.1266 -4.7348 27 8 3.4979 -2.5188 -6.0255 28 6 2.7262 -3.1816 -7.0292 29 1 -0.5401 0.9314 -0.0850 30 1 -0.5400 -0.9315 0.0851 31 1 3.1351 1.1060 -0.0005 32 1 1.8000 1.8767 -0.8900 33 1 1.8001 1.8767 0.8900 34 1 1.4287 -2.0913 0.4080 35 1 2.9601 -1.2071 0.6115 36 1 0.4954 -1.2659 -2.0584 37 1 1.5490 -2.1066 -3.2209 38 1 -0.0807 -3.6985 -2.3301 39 1 1.5337 -4.1129 -1.7051 40 1 0.3646 -3.2693 -0.6610 41 1 6.1053 -5.7841 -2.4372 42 1 5.8043 -4.7185 -3.8308 43 1 7.1850 -2.7104 -4.0290 44 1 11.0177 -3.0364 -2.4374 45 1 3.9019 -1.3183 -3.6690 46 1 5.3100 -2.3198 -4.0958 47 1 3.7793 -4.1532 -4.7934 48 1 2.3813 -3.1254 -4.3964 49 1 3.0741 -4.2090 -7.1353 50 1 1.6758 -3.1818 -6.7386 51 1 2.8407 -2.6596 -7.9792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343008928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:19 Heat of formation + Delta-G solvation = 11.952983 kcal Electronic energy + Delta-G solvation = -31378.294534 eV Core-core repulsion = 27315.454825 eV Total energy + Delta-G solvation = -4062.839709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.69088 -38.73340 -38.21391 -36.20813 -35.17468 -34.56845 -32.18522 -31.59335 -30.60097 -29.67668 -28.01595 -27.42173 -26.53645 -26.05555 -25.41756 -23.57518 -22.93279 -21.76406 -20.40591 -19.84848 -18.40526 -17.53423 -17.01450 -16.69746 -16.33257 -16.25785 -15.77669 -15.38724 -14.86250 -14.75847 -14.63553 -14.46350 -14.30119 -13.85582 -13.70583 -13.44443 -13.36613 -13.19600 -13.00705 -12.67614 -12.43461 -12.17833 -11.87025 -11.78940 -11.62367 -11.54018 -11.35304 -11.28798 -11.20908 -11.14196 -11.04515 -10.87665 -10.76710 -10.20939 -10.11639 -9.91333 -9.85593 -9.56128 -9.25961 -9.05043 -8.63230 -8.42437 -7.90099 -6.04900 -4.24732 1.82972 2.09763 2.49115 3.24186 3.25982 3.33732 3.36193 3.51780 4.03177 4.35326 4.55411 4.63111 4.68858 4.72124 4.78002 4.89980 4.98285 5.05030 5.09490 5.13949 5.18920 5.20625 5.27484 5.30015 5.34982 5.43869 5.46424 5.54757 5.56000 5.57351 5.69516 5.72398 5.77810 5.83691 5.88592 6.01820 6.14824 6.18072 6.29686 6.36114 6.38487 6.55421 6.68700 6.76060 6.82502 6.91506 7.45072 7.64899 7.78117 8.07360 8.76682 9.18897 9.24479 9.51326 10.99169 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.003410 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.636031 B = 8209.226381 C = 9307.554804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.116 4.116 4 C 0.102 3.898 5 N -0.447 5.447 6 C 0.045 3.955 7 C -0.187 4.187 8 C 0.340 3.660 9 N -0.320 5.320 10 N -0.297 5.297 11 C 0.221 3.779 12 C -0.065 4.065 13 C 0.238 3.762 14 H 0.065 0.935 15 O -0.561 6.561 16 C -0.574 4.574 17 H 0.059 0.941 18 C 0.081 3.919 19 N -0.855 5.855 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.462 5.462 25 C 0.112 3.888 26 C 0.046 3.954 27 O -0.382 6.382 28 C 0.033 3.967 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.340 0.660 44 H 0.262 0.738 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.044 0.956 50 H 0.040 0.960 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.142 5.209 -4.091 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.109 4.109 3 C -0.173 4.173 4 C -0.025 4.025 5 N -0.171 5.171 6 C -0.082 4.082 7 C -0.246 4.246 8 C -0.017 4.017 9 N -0.164 5.164 10 N -0.135 5.135 11 C -0.046 4.046 12 C -0.105 4.105 13 C 0.179 3.821 14 H 0.082 0.918 15 O -0.364 6.364 16 C -0.612 4.612 17 H 0.077 0.923 18 C -0.126 4.126 19 N -0.490 5.490 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 N -0.157 5.157 25 C -0.012 4.012 26 C -0.031 4.031 27 O -0.300 6.300 28 C -0.063 4.063 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.184 0.816 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.134 0.866 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.614 5.422 -2.289 21.438 hybrid contribution 0.208 -0.928 -1.963 2.181 sum -20.406 4.493 -4.251 21.323 Atomic orbital electron populations 1.23717 0.95206 1.01952 1.02392 1.21682 0.94986 0.95518 0.98701 1.20807 1.00746 0.94117 1.01634 1.21075 1.00696 0.93924 0.86777 1.58710 1.09817 1.33393 1.15143 1.22467 0.91365 0.96906 0.97473 1.22402 1.01923 0.98118 1.02118 1.22181 0.96351 0.96030 0.87089 1.74536 1.13881 1.04235 1.23748 1.74005 1.09934 1.20269 1.09326 1.25292 0.96399 0.89428 0.93470 1.21241 0.92863 0.99793 0.96589 1.19414 0.86340 0.80065 0.96250 0.91759 1.86672 1.94574 1.30856 1.24275 1.21551 0.92301 1.11032 1.36335 0.92291 1.25031 0.98652 0.94507 0.94385 1.70079 1.18766 1.21295 1.38906 0.86638 0.81424 0.80565 0.79550 1.20534 1.21093 1.19732 1.45870 1.28773 1.28255 1.12770 1.21584 1.03827 0.96961 0.78806 1.22884 0.99251 0.97036 0.83969 1.87838 1.70406 1.53976 1.17788 1.22774 0.94439 0.97584 0.91541 0.88177 0.88557 0.91504 0.91525 0.91710 0.92029 0.89038 0.88801 0.90393 0.91831 0.92207 0.91858 0.88478 0.91169 0.81595 0.92863 0.87698 0.86578 0.92355 0.92946 0.93734 0.94140 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 12.50 29.02 0.36 -1.23 16 2 C -0.11 -1.07 5.07 -101.07 -0.51 -1.58 16 3 C -0.12 -1.08 10.05 36.01 0.36 -0.72 16 4 C 0.10 1.25 4.43 -4.98 -0.02 1.23 16 5 N -0.45 -5.91 4.67 -175.89 -0.82 -6.73 16 6 C 0.04 0.47 5.96 -3.83 -0.02 0.45 16 7 C -0.19 -2.00 9.38 37.16 0.35 -1.65 16 8 C 0.34 5.65 5.19 -318.88 -1.65 3.99 16 9 N -0.32 -6.23 11.18 30.31 0.34 -5.89 16 10 N -0.30 -6.34 12.18 32.99 0.40 -5.94 16 11 C 0.22 4.33 7.09 -154.02 -1.09 3.24 16 12 C -0.06 -1.27 5.15 -27.88 -0.14 -1.42 16 13 C 0.24 5.82 2.81 -27.88 -0.08 5.74 16 14 H 0.06 1.84 8.14 -51.93 -0.42 1.41 16 15 O -0.56 -13.60 11.57 -35.23 -0.41 -14.01 16 16 C -0.57 -15.10 8.76 -34.44 -0.30 -15.41 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 19 N -0.86 -24.95 12.84 55.43 0.71 -24.24 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 N -0.46 -7.72 2.81 -114.09 -0.32 -8.04 16 25 C 0.11 1.57 5.88 -4.04 -0.02 1.55 16 26 C 0.05 0.55 6.16 37.16 0.23 0.78 16 27 O -0.38 -4.52 10.70 -35.23 -0.38 -4.90 16 28 C 0.03 0.28 11.01 101.05 1.11 1.39 16 29 H 0.10 0.70 8.05 -52.49 -0.42 0.27 16 30 H 0.10 0.74 7.96 -52.48 -0.42 0.32 16 31 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.75 6.18 -51.93 -0.32 0.43 16 35 H 0.09 1.31 7.88 -51.93 -0.41 0.90 16 36 H 0.09 0.84 6.13 -51.93 -0.32 0.53 16 37 H 0.08 0.81 5.33 -51.93 -0.28 0.53 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 40 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 41 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 43 H 0.34 7.17 7.70 45.56 0.35 7.52 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 46 H 0.12 1.76 5.62 -51.93 -0.29 1.47 16 47 H 0.06 0.71 7.81 -51.93 -0.41 0.31 16 48 H 0.05 0.57 5.86 -51.92 -0.30 0.26 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -32.25 408.52 -8.54 -40.79 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.67 Total: 8.63 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.53 Total: -1.52 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.31 Total: -50.84 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.78 Total: -18.91 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.25 -8.54 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343008928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.745 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds