Wall clock time and date at job start Tue Mar 31 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99742 * 2 1 4 4 C 1.50696 * 120.00056 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47180 * 96.55151 * 4 2 1 6 6 C 1.46898 * 111.00073 * 289.76987 * 5 4 2 7 7 C 1.52998 * 109.46964 * 290.16157 * 6 5 4 8 8 C 1.38582 * 110.99789 * 165.81381 * 5 4 2 9 9 N 1.31213 * 126.47415 * 18.38027 * 8 5 4 10 10 N 1.28532 * 109.85903 * 179.72745 * 9 8 5 11 11 C 1.30292 * 110.05146 * 0.45001 * 10 9 8 12 12 C 1.50704 * 126.34241 * 179.81769 * 11 10 9 13 13 C 1.53000 * 109.47468 * 269.69185 * 12 11 10 14 14 H 1.09002 * 109.46990 * 55.00393 * 13 12 11 15 15 O 1.42901 * 109.47126 * 295.00564 * 13 12 11 16 16 C 1.50698 * 109.47188 * 175.00392 * 13 12 11 17 17 H 1.08001 * 120.00091 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99846 * 180.02562 * 16 13 12 19 19 N 1.31510 * 120.00007 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99680 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46918 * 90.00205 * 20 18 16 22 22 H 1.48502 * 109.46985 * 209.99878 * 20 18 16 23 23 H 1.48497 * 109.47081 * 330.00212 * 20 18 16 24 24 N 1.36451 * 126.47134 * 198.37786 * 8 5 4 25 25 C 1.46501 * 127.13944 * 359.97438 * 24 8 5 26 26 C 1.52997 * 109.47658 * 264.39366 * 25 24 8 27 27 O 1.42897 * 109.47677 * 181.31526 * 26 25 24 28 28 C 1.42897 * 114.00125 * 179.97438 * 27 26 25 29 29 H 1.07997 * 120.00522 * 5.21434 * 1 2 3 30 30 H 1.08004 * 119.99887 * 185.21952 * 1 2 3 31 31 H 1.08998 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46839 * 300.00206 * 3 2 1 33 33 H 1.08997 * 109.46827 * 60.00376 * 3 2 1 34 34 H 1.08998 * 109.47532 * 336.54928 * 4 2 1 35 35 H 1.09007 * 109.46607 * 216.55067 * 4 2 1 36 36 H 1.09004 * 109.47075 * 50.15877 * 6 5 4 37 37 H 1.08992 * 109.47160 * 170.16353 * 6 5 4 38 38 H 1.09003 * 109.47381 * 185.32584 * 7 6 5 39 39 H 1.09007 * 109.47393 * 305.33050 * 7 6 5 40 40 H 1.09006 * 109.47054 * 65.32922 * 7 6 5 41 41 H 1.08996 * 109.47171 * 29.69457 * 12 11 10 42 42 H 1.09001 * 109.46504 * 149.69349 * 12 11 10 43 43 H 0.96705 * 113.99678 * 299.99725 * 15 13 12 44 44 H 0.97000 * 119.99950 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46803 * 24.39591 * 25 24 8 46 46 H 1.08998 * 109.47482 * 144.38886 * 25 24 8 47 47 H 1.09006 * 109.46960 * 301.32197 * 26 25 24 48 48 H 1.09008 * 109.47076 * 61.31418 * 26 25 24 49 49 H 1.08994 * 109.47080 * 300.00396 * 28 27 26 50 50 H 1.08994 * 109.46680 * 60.00299 * 28 27 26 51 51 H 1.08997 * 109.47022 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4452 -1.6495 -1.3767 6 6 1.2682 -2.0263 -2.1708 7 6 0.7330 -3.3736 -1.6816 8 6 3.3970 -2.6566 -1.3907 9 7 3.6763 -3.4797 -0.4077 10 7 4.6076 -4.2892 -0.7672 11 6 4.9812 -4.0267 -1.9875 12 6 6.0493 -4.7474 -2.7691 13 6 7.3988 -4.0644 -2.5383 14 1 7.6024 -4.0142 -1.4687 15 8 7.3621 -2.7421 -3.0788 16 6 8.4853 -4.8557 -3.2198 17 1 8.2381 -5.7559 -3.7629 18 6 9.7951 -4.4309 -3.1492 19 7 10.0962 -3.3350 -2.4875 20 14 11.1420 -5.4122 -3.9933 21 1 11.3174 -4.9183 -5.3828 22 1 12.4150 -5.2500 -3.2460 23 1 10.7643 -6.8480 -4.0222 24 7 4.2208 -2.9797 -2.4294 25 6 4.2781 -2.3385 -3.7453 26 6 3.4176 -3.1266 -4.7348 27 8 3.4979 -2.5188 -6.0255 28 6 2.7262 -3.1816 -7.0292 29 1 -0.5401 0.9314 -0.0850 30 1 -0.5400 -0.9315 0.0851 31 1 3.1351 1.1060 -0.0005 32 1 1.8000 1.8767 -0.8900 33 1 1.8001 1.8767 0.8900 34 1 1.4287 -2.0913 0.4080 35 1 2.9601 -1.2071 0.6115 36 1 0.4954 -1.2659 -2.0584 37 1 1.5490 -2.1066 -3.2209 38 1 -0.0807 -3.6985 -2.3301 39 1 1.5337 -4.1129 -1.7051 40 1 0.3646 -3.2693 -0.6610 41 1 6.1053 -5.7841 -2.4372 42 1 5.8043 -4.7185 -3.8308 43 1 7.1850 -2.7104 -4.0290 44 1 11.0177 -3.0364 -2.4374 45 1 3.9019 -1.3183 -3.6690 46 1 5.3100 -2.3198 -4.0958 47 1 3.7793 -4.1532 -4.7934 48 1 2.3813 -3.1254 -4.3964 49 1 3.0741 -4.2090 -7.1353 50 1 1.6758 -3.1818 -6.7386 51 1 2.8407 -2.6596 -7.9792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343008928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:18 Heat of formation + Delta-G solvation = -9.576642 kcal Electronic energy + Delta-G solvation = -31379.228128 eV Core-core repulsion = 27315.454825 eV Total energy + Delta-G solvation = -4063.773303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.08974 -39.76386 -39.11492 -38.05544 -36.27322 -35.62434 -34.26207 -33.09150 -31.72229 -30.76564 -29.58447 -28.18801 -27.39783 -27.17631 -27.00747 -24.71086 -23.97418 -23.53712 -21.73895 -21.24184 -19.28182 -19.15832 -18.40976 -17.89313 -17.39093 -17.17463 -16.87028 -16.67170 -16.55861 -16.17729 -15.83939 -15.69767 -15.48269 -15.19023 -14.80241 -14.72369 -14.59602 -14.21407 -14.12775 -13.86902 -13.42614 -13.27623 -13.03911 -13.01986 -12.83854 -12.75637 -12.65626 -12.59596 -12.54737 -12.45112 -12.28929 -12.09269 -12.04678 -11.97703 -11.52138 -11.31800 -11.12608 -10.75108 -10.72844 -10.68560 -10.22459 -9.95242 -9.32153 -8.12891 -6.39542 0.74195 0.93098 1.39913 1.43216 1.44757 1.55107 1.79048 2.40761 2.53335 2.98764 3.13459 3.42895 3.57227 3.68283 3.76554 3.84598 3.90608 3.94462 4.04042 4.10622 4.18949 4.20970 4.31584 4.41247 4.47325 4.49644 4.51540 4.55486 4.61910 4.66907 4.72433 4.77729 4.79798 4.84233 4.86188 4.89790 4.94260 5.04684 5.12238 5.16335 5.18465 5.48019 5.59860 5.61803 5.69154 5.70542 5.94932 6.01931 6.02799 6.19965 6.71875 7.31985 7.49328 7.73788 8.91766 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.003410 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.636031 B = 8209.226381 C = 9307.554804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.113 4.113 4 C 0.105 3.895 5 N -0.447 5.447 6 C 0.046 3.954 7 C -0.180 4.180 8 C 0.358 3.642 9 N -0.352 5.352 10 N -0.332 5.332 11 C 0.208 3.792 12 C -0.046 4.046 13 C 0.244 3.756 14 H 0.011 0.989 15 O -0.573 6.573 16 C -0.582 4.582 17 H 0.071 0.929 18 C 0.026 3.974 19 N -0.901 5.901 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.262 1.262 24 N -0.458 5.458 25 C 0.110 3.890 26 C 0.059 3.941 27 O -0.400 6.400 28 C 0.025 3.975 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.355 0.645 44 H 0.260 0.740 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.047 0.953 50 H 0.056 0.944 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 5.507 -6.237 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.169 4.169 4 C -0.021 4.021 5 N -0.171 5.171 6 C -0.079 4.079 7 C -0.239 4.239 8 C 0.001 3.999 9 N -0.195 5.195 10 N -0.171 5.171 11 C -0.061 4.061 12 C -0.086 4.086 13 C 0.185 3.815 14 H 0.029 0.971 15 O -0.378 6.378 16 C -0.619 4.619 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.786 3.214 21 H -0.195 1.195 22 H -0.215 1.215 23 H -0.186 1.186 24 N -0.153 5.153 25 C -0.013 4.013 26 C -0.019 4.019 27 O -0.318 6.318 28 C -0.070 4.070 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.200 0.800 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.141 5.713 -4.464 24.250 hybrid contribution 0.844 -0.921 -1.285 1.792 sum -22.297 4.792 -5.749 23.519 Atomic orbital electron populations 1.23926 0.94319 1.03326 0.99010 1.21520 0.95535 0.94208 1.01729 1.20772 0.99216 0.94217 1.02721 1.21030 0.99687 0.95536 0.85836 1.58936 1.10483 1.31630 1.16089 1.22605 0.90600 0.97585 0.97155 1.22345 1.01553 0.97126 1.02858 1.22555 0.96060 0.95157 0.86083 1.74446 1.14503 1.05400 1.25183 1.73897 1.11007 1.21754 1.10420 1.25082 0.97065 0.90626 0.93297 1.20896 0.90450 0.99070 0.98218 1.19074 0.88832 0.80390 0.93183 0.97064 1.86602 1.94859 1.30779 1.25567 1.21971 0.92927 1.11305 1.35747 0.91084 1.25923 1.01308 0.95416 0.95031 1.70237 1.19141 1.23421 1.40946 0.85521 0.77928 0.79389 0.78513 1.19503 1.21497 1.18620 1.45921 1.28078 1.27540 1.13711 1.21715 1.03794 0.97653 0.78094 1.22682 0.99295 0.96103 0.83833 1.87813 1.71366 1.54624 1.17991 1.23009 0.94982 0.97794 0.91254 0.86111 0.87696 0.93836 0.90558 0.90511 0.92072 0.92048 0.86369 0.89764 0.89221 0.95504 0.91844 0.88501 0.88511 0.79955 0.93070 0.86888 0.87851 0.92736 0.91542 0.93413 0.92522 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 12.50 67.78 0.85 -1.34 16 2 C -0.13 -2.34 5.07 -16.49 -0.08 -2.43 16 3 C -0.11 -1.97 10.05 71.24 0.72 -1.25 16 4 C 0.11 2.59 4.43 85.56 0.38 2.96 16 5 N -0.45 -11.53 4.67 -710.38 -3.31 -14.85 16 6 C 0.05 0.87 5.96 86.30 0.51 1.38 16 7 C -0.18 -3.51 9.38 71.98 0.67 -2.84 16 8 C 0.36 12.09 5.19 260.11 1.35 13.44 16 9 N -0.35 -14.26 11.18 -58.01 -0.65 -14.90 16 10 N -0.33 -14.85 12.18 -49.54 -0.60 -15.45 16 11 C 0.21 8.37 7.09 137.64 0.98 9.35 16 12 C -0.05 -1.85 5.15 29.85 0.15 -1.70 16 13 C 0.24 12.35 2.81 29.85 0.08 12.43 16 14 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 15 O -0.57 -28.60 11.57 -148.98 -1.72 -30.32 16 16 C -0.58 -30.86 8.76 25.60 0.22 -30.64 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.03 1.42 5.40 84.66 0.46 1.88 16 19 N -0.90 -53.98 12.84 21.45 0.28 -53.71 16 20 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 N -0.46 -15.45 2.81 -514.86 -1.45 -16.90 16 25 C 0.11 3.01 5.88 86.38 0.51 3.52 16 26 C 0.06 1.28 6.16 71.98 0.44 1.73 16 27 O -0.40 -8.59 10.70 -148.98 -1.59 -10.19 16 28 C 0.03 0.36 11.01 113.37 1.25 1.61 16 29 H 0.12 1.15 8.05 -2.91 -0.02 1.12 16 30 H 0.10 1.22 7.96 -2.91 -0.02 1.20 16 31 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.48 6.18 -2.39 -0.01 1.47 16 35 H 0.06 1.86 7.88 -2.38 -0.02 1.84 16 36 H 0.12 1.68 6.13 -2.38 -0.01 1.67 16 37 H 0.08 1.50 5.33 -2.39 -0.01 1.48 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.03 0.71 6.72 -2.38 -0.02 0.69 16 40 H 0.06 1.23 6.72 -2.38 -0.02 1.21 16 41 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 42 H 0.10 3.30 7.64 -2.39 -0.02 3.28 16 43 H 0.35 15.12 7.70 -74.05 -0.57 14.55 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.11 2.89 8.10 -2.39 -0.02 2.87 16 46 H 0.10 3.11 5.62 -2.39 -0.01 3.10 16 47 H 0.05 1.24 7.81 -2.38 -0.02 1.23 16 48 H 0.07 1.27 5.86 -2.38 -0.01 1.25 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.80 408.52 1.82 -70.98 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.36 Total: 32.56 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 8.49 Total: 8.11 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -5.74 Total: -115.80 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -3.32 Total: -40.51 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.80 1.82 -70.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343008928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.401 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds