Wall clock time and date at job start Tue Mar 31 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46977 * 2 1 4 4 C 1.42895 * 113.99915 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47405 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47344 * 175.76998 * 6 5 4 8 8 C 1.36743 * 127.13579 * 84.24501 * 7 6 5 9 9 C 1.50702 * 126.34629 * 359.94585 * 8 7 6 10 10 C 1.52997 * 109.47018 * 89.99953 * 9 8 7 11 11 H 1.09000 * 109.47104 * 54.99870 * 10 9 8 12 12 O 1.42900 * 109.47284 * 294.99814 * 10 9 8 13 13 C 1.50699 * 109.46820 * 175.00026 * 10 9 8 14 14 H 1.07998 * 120.00094 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99802 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99970 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99888 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.47141 * 89.99678 * 17 15 13 19 19 H 1.48498 * 109.47038 * 209.99192 * 17 15 13 20 20 H 1.48497 * 109.47319 * 329.99669 * 17 15 13 21 21 N 1.30289 * 107.30528 * 179.97438 * 8 7 6 22 22 N 1.28528 * 110.05554 * 0.02562 * 21 8 7 23 23 C 1.31216 * 109.85993 * 359.74198 * 22 21 8 24 24 N 1.38579 * 126.47662 * 180.26321 * 23 22 21 25 25 C 1.46900 * 110.99634 * 258.36314 * 24 23 22 26 26 C 1.46897 * 110.99918 * 22.31081 * 24 23 22 27 27 C 1.52997 * 117.50312 * 243.62335 * 26 24 23 28 28 C 1.52996 * 60.00283 * 252.51407 * 27 26 24 29 29 H 1.09001 * 109.47048 * 60.00173 * 1 2 3 30 30 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47403 * 300.00439 * 1 2 3 32 32 H 1.08995 * 109.46817 * 239.99748 * 2 1 3 33 33 H 1.09001 * 109.47048 * 119.99827 * 2 1 3 34 34 H 1.08999 * 109.47553 * 59.99663 * 4 3 2 35 35 H 1.09005 * 109.47281 * 300.00044 * 4 3 2 36 36 H 1.08999 * 109.47395 * 59.99763 * 5 4 3 37 37 H 1.09002 * 109.47301 * 299.99910 * 5 4 3 38 38 H 1.08999 * 109.47521 * 295.77306 * 6 5 4 39 39 H 1.09004 * 109.47119 * 55.77127 * 6 5 4 40 40 H 1.08998 * 109.46891 * 209.99866 * 9 8 7 41 41 H 1.09006 * 109.46972 * 329.99892 * 9 8 7 42 42 H 0.96707 * 113.99955 * 300.00649 * 12 10 9 43 43 H 0.97001 * 119.99727 * 179.97438 * 16 15 13 44 44 H 1.08999 * 109.47483 * 53.91856 * 25 24 23 45 45 H 1.09009 * 109.47015 * 173.91863 * 25 24 23 46 46 H 1.09001 * 109.47243 * 293.91613 * 25 24 23 47 47 H 1.09003 * 115.55079 * 29.33360 * 26 24 23 48 48 H 1.09008 * 117.49763 * 0.02562 * 27 26 24 49 49 H 1.09000 * 117.50469 * 145.01705 * 27 26 24 50 50 H 1.09002 * 117.49287 * 252.50947 * 28 27 26 51 51 H 1.08997 * 117.50258 * 107.49190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 0.0001 7 7 5.7287 4.4709 -0.1011 8 6 5.8299 5.3737 0.9209 9 6 5.5699 5.1034 2.3805 10 6 6.8672 4.6527 3.0547 11 1 7.6441 5.3976 2.8823 12 8 7.2789 3.3992 2.5056 13 6 6.6369 4.5006 4.5362 14 1 5.6628 4.7054 4.9550 15 6 7.6702 4.1011 5.3570 16 7 8.8566 3.8522 4.8470 17 14 7.3849 3.9133 7.1935 18 1 6.9453 2.5254 7.4869 19 1 8.6473 4.1970 7.9221 20 1 6.3352 4.8680 7.6316 21 7 6.1921 6.5112 0.3988 22 7 6.3251 6.3895 -0.8737 23 6 6.0580 5.1564 -1.2340 24 7 6.0998 4.6471 -2.5221 25 6 4.7488 4.5354 -3.0881 26 6 6.9654 5.4637 -3.3833 27 6 6.3112 6.1808 -4.5660 28 6 7.2123 4.9686 -4.8098 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9767 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4214 0.8905 37 1 3.4223 3.4224 -0.8894 38 1 5.7482 2.6420 0.9253 39 1 5.7585 2.5120 -0.8498 40 1 5.2084 6.0132 2.8598 41 1 4.8189 4.3191 2.4766 42 1 6.6344 2.6878 2.6226 43 1 9.5836 3.5714 5.4246 44 1 4.2445 5.4992 -3.0178 45 1 4.8166 4.2363 -4.1342 46 1 4.1827 3.7878 -2.5325 47 1 7.7865 5.9721 -2.8779 48 1 5.2384 6.0469 -4.7049 49 1 6.7017 7.1612 -4.8388 50 1 8.1957 5.1515 -5.2429 51 1 6.7324 4.0369 -5.1093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343901870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:52 Heat of formation + Delta-G solvation = 15.183861 kcal Electronic energy + Delta-G solvation = -30650.313139 eV Core-core repulsion = 26587.613532 eV Total energy + Delta-G solvation = -4062.699607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.59825 -38.95711 -38.40877 -36.33714 -35.59019 -34.01594 -32.47444 -32.19667 -31.18944 -30.57837 -28.41726 -26.60441 -25.84984 -25.14012 -23.05490 -22.54896 -22.37637 -22.23223 -21.41849 -19.98176 -19.64560 -17.68602 -17.05332 -16.94396 -16.60702 -16.22344 -16.15962 -15.17591 -14.90676 -14.66757 -14.66369 -14.47149 -14.45409 -13.80421 -13.74490 -13.24407 -13.11711 -13.03995 -12.74037 -12.52016 -12.42948 -12.26103 -11.95832 -11.81193 -11.63257 -11.40001 -11.28559 -11.23181 -11.09642 -11.05899 -10.96122 -10.86192 -10.77909 -10.56413 -10.13392 -10.00517 -9.84001 -9.81997 -9.41621 -9.01812 -8.64537 -8.42119 -7.89955 -6.06480 -4.26255 2.13306 2.42924 3.24477 3.24931 3.32660 3.34491 3.37359 3.61223 3.91815 4.34045 4.57098 4.61617 4.72710 4.76185 4.77176 4.82187 4.86238 4.90065 4.97803 5.00709 5.08381 5.10745 5.19098 5.21128 5.22572 5.38914 5.44103 5.44855 5.46859 5.48793 5.56955 5.60876 5.71092 5.75016 5.81656 5.91785 5.94098 6.01079 6.15719 6.23707 6.33182 6.37365 6.63700 6.69911 6.91995 6.95978 7.46812 7.64081 7.76977 8.06064 8.75359 9.20582 9.22885 9.49771 10.97563 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007044 B = 0.004018 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3974.333006 B = 6967.260449 C =10244.852204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.068 3.932 5 C -0.137 4.137 6 C 0.113 3.887 7 N -0.461 5.461 8 C 0.224 3.776 9 C -0.064 4.064 10 C 0.238 3.762 11 H 0.065 0.935 12 O -0.561 6.561 13 C -0.574 4.574 14 H 0.060 0.940 15 C 0.081 3.919 16 N -0.856 5.856 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.272 1.272 21 N -0.299 5.299 22 N -0.315 5.315 23 C 0.330 3.670 24 N -0.426 5.426 25 C 0.020 3.980 26 C 0.042 3.958 27 C -0.207 4.207 28 C -0.169 4.169 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.338 0.662 43 H 0.261 0.739 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -7.273 -16.716 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.009 4.009 5 C -0.175 4.175 6 C -0.011 4.011 7 N -0.154 5.154 8 C -0.044 4.044 9 C -0.104 4.104 10 C 0.179 3.821 11 H 0.083 0.917 12 O -0.363 6.363 13 C -0.612 4.612 14 H 0.078 0.922 15 C -0.126 4.126 16 N -0.491 5.491 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 N -0.138 5.138 22 N -0.159 5.159 23 C -0.026 4.026 24 N -0.148 5.148 25 C -0.127 4.127 26 C -0.067 4.067 27 C -0.246 4.246 28 C -0.207 4.207 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.182 0.818 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.148 0.852 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.135 -5.833 -16.929 21.085 hybrid contribution -1.026 -1.375 1.191 2.089 sum -12.161 -7.208 -15.737 21.155 Atomic orbital electron populations 1.21748 0.93780 1.02204 1.03171 1.22463 0.95571 0.83699 1.00205 1.87873 1.20955 1.26563 1.95490 1.22312 0.81473 0.96244 1.00895 1.21933 0.94850 0.96314 1.04420 1.21747 0.94403 0.78801 1.06109 1.45983 1.52206 1.11025 1.06178 1.25280 1.00369 0.85313 0.93395 1.21232 1.02904 1.03163 0.83146 1.19421 0.88724 0.83386 0.90563 0.91748 1.86682 1.47831 1.20418 1.81411 1.21565 0.97357 1.49923 0.92355 0.92226 1.25032 0.94882 0.94073 0.98572 1.70084 1.01209 1.42638 1.35190 0.86640 0.77836 0.78471 0.85250 1.20565 1.21087 1.19677 1.74003 1.18600 1.20594 1.00639 1.74524 1.22066 1.12768 1.06567 1.22169 1.05019 0.88377 0.87047 1.58383 1.11818 1.47596 0.97026 1.22701 0.87506 1.01658 1.00866 1.22444 0.98806 0.98164 0.87299 1.23531 0.99568 0.97485 1.03998 1.23152 1.01481 0.98301 0.97801 0.91952 0.91120 0.91745 0.93442 0.93148 0.92974 0.92339 0.89958 0.90802 0.87267 0.88395 0.88475 0.91028 0.81819 0.92871 0.93758 0.89799 0.90717 0.85172 0.88280 0.88268 0.88008 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.29 10.34 -35.23 -0.36 -4.66 16 4 C 0.07 0.66 5.94 37.15 0.22 0.88 16 5 C -0.14 -1.54 5.84 -26.73 -0.16 -1.69 16 6 C 0.11 1.47 5.78 -4.04 -0.02 1.44 16 7 N -0.46 -7.77 2.81 -114.08 -0.32 -8.09 16 8 C 0.22 4.45 7.09 -154.01 -1.09 3.36 16 9 C -0.06 -1.27 5.15 -27.88 -0.14 -1.41 16 10 C 0.24 5.78 2.81 -27.88 -0.08 5.70 16 11 H 0.06 1.84 8.14 -51.93 -0.42 1.41 16 12 O -0.56 -13.32 11.56 -35.23 -0.41 -13.73 16 13 C -0.57 -15.01 8.76 -34.44 -0.30 -15.31 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -24.78 12.84 55.43 0.71 -24.07 16 17 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 N -0.30 -6.59 12.18 32.99 0.40 -6.18 16 22 N -0.32 -6.40 11.30 30.31 0.34 -6.06 16 23 C 0.33 5.70 6.85 -318.88 -2.18 3.52 16 24 N -0.43 -5.80 4.94 -174.75 -0.86 -6.67 16 25 C 0.02 0.21 8.21 60.06 0.49 0.70 16 26 C 0.04 0.52 5.70 -67.71 -0.39 0.14 16 27 C -0.21 -2.05 9.52 -26.73 -0.25 -2.31 16 28 C -0.17 -1.57 9.96 -26.73 -0.27 -1.84 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 37 H 0.07 0.84 6.10 -51.93 -0.32 0.52 16 38 H 0.11 1.48 5.61 -51.93 -0.29 1.19 16 39 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 41 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 42 H 0.34 6.82 7.70 45.56 0.35 7.17 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.04 0.51 7.59 -51.93 -0.39 0.11 16 45 H 0.08 0.70 6.20 -51.92 -0.32 0.37 16 46 H 0.07 0.75 5.94 -51.93 -0.31 0.44 16 47 H 0.13 1.92 7.72 -51.93 -0.40 1.52 16 48 H 0.10 0.91 5.93 -51.92 -0.31 0.60 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.10 0.81 7.58 -51.93 -0.39 0.42 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -33.20 410.19 -10.77 -43.97 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.79 Total: 8.45 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.64 Total: -4.69 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.27 Total: -51.07 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.77 Total: -18.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.20 -10.77 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343901870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.155 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds