Wall clock time and date at job start Tue Mar 31 2020 21:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46977 * 2 1 4 4 C 1.42895 * 113.99915 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47405 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47344 * 175.76998 * 6 5 4 8 8 C 1.36743 * 127.13579 * 84.24501 * 7 6 5 9 9 C 1.50702 * 126.34629 * 359.94585 * 8 7 6 10 10 C 1.52997 * 109.47018 * 89.99953 * 9 8 7 11 11 H 1.09000 * 109.47104 * 54.99870 * 10 9 8 12 12 O 1.42900 * 109.47284 * 294.99814 * 10 9 8 13 13 C 1.50699 * 109.46820 * 175.00026 * 10 9 8 14 14 H 1.07998 * 120.00094 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99802 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99970 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99888 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.47141 * 89.99678 * 17 15 13 19 19 H 1.48498 * 109.47038 * 209.99192 * 17 15 13 20 20 H 1.48497 * 109.47319 * 329.99669 * 17 15 13 21 21 N 1.30289 * 107.30528 * 179.97438 * 8 7 6 22 22 N 1.28528 * 110.05554 * 0.02562 * 21 8 7 23 23 C 1.31216 * 109.85993 * 359.74198 * 22 21 8 24 24 N 1.38579 * 126.47662 * 180.26321 * 23 22 21 25 25 C 1.46900 * 110.99634 * 258.36314 * 24 23 22 26 26 C 1.46897 * 110.99918 * 22.31081 * 24 23 22 27 27 C 1.52997 * 117.50312 * 243.62335 * 26 24 23 28 28 C 1.52996 * 60.00283 * 252.51407 * 27 26 24 29 29 H 1.09001 * 109.47048 * 60.00173 * 1 2 3 30 30 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47403 * 300.00439 * 1 2 3 32 32 H 1.08995 * 109.46817 * 239.99748 * 2 1 3 33 33 H 1.09001 * 109.47048 * 119.99827 * 2 1 3 34 34 H 1.08999 * 109.47553 * 59.99663 * 4 3 2 35 35 H 1.09005 * 109.47281 * 300.00044 * 4 3 2 36 36 H 1.08999 * 109.47395 * 59.99763 * 5 4 3 37 37 H 1.09002 * 109.47301 * 299.99910 * 5 4 3 38 38 H 1.08999 * 109.47521 * 295.77306 * 6 5 4 39 39 H 1.09004 * 109.47119 * 55.77127 * 6 5 4 40 40 H 1.08998 * 109.46891 * 209.99866 * 9 8 7 41 41 H 1.09006 * 109.46972 * 329.99892 * 9 8 7 42 42 H 0.96707 * 113.99955 * 300.00649 * 12 10 9 43 43 H 0.97001 * 119.99727 * 179.97438 * 16 15 13 44 44 H 1.08999 * 109.47483 * 53.91856 * 25 24 23 45 45 H 1.09009 * 109.47015 * 173.91863 * 25 24 23 46 46 H 1.09001 * 109.47243 * 293.91613 * 25 24 23 47 47 H 1.09003 * 115.55079 * 29.33360 * 26 24 23 48 48 H 1.09008 * 117.49763 * 0.02562 * 27 26 24 49 49 H 1.09000 * 117.50469 * 145.01705 * 27 26 24 50 50 H 1.09002 * 117.49287 * 252.50947 * 28 27 26 51 51 H 1.08997 * 117.50258 * 107.49190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 0.0001 7 7 5.7287 4.4709 -0.1011 8 6 5.8299 5.3737 0.9209 9 6 5.5699 5.1034 2.3805 10 6 6.8672 4.6527 3.0547 11 1 7.6441 5.3976 2.8823 12 8 7.2789 3.3992 2.5056 13 6 6.6369 4.5006 4.5362 14 1 5.6628 4.7054 4.9550 15 6 7.6702 4.1011 5.3570 16 7 8.8566 3.8522 4.8470 17 14 7.3849 3.9133 7.1935 18 1 6.9453 2.5254 7.4869 19 1 8.6473 4.1970 7.9221 20 1 6.3352 4.8680 7.6316 21 7 6.1921 6.5112 0.3988 22 7 6.3251 6.3895 -0.8737 23 6 6.0580 5.1564 -1.2340 24 7 6.0998 4.6471 -2.5221 25 6 4.7488 4.5354 -3.0881 26 6 6.9654 5.4637 -3.3833 27 6 6.3112 6.1808 -4.5660 28 6 7.2123 4.9686 -4.8098 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9767 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4214 0.8905 37 1 3.4223 3.4224 -0.8894 38 1 5.7482 2.6420 0.9253 39 1 5.7585 2.5120 -0.8498 40 1 5.2084 6.0132 2.8598 41 1 4.8189 4.3191 2.4766 42 1 6.6344 2.6878 2.6226 43 1 9.5836 3.5714 5.4246 44 1 4.2445 5.4992 -3.0178 45 1 4.8166 4.2363 -4.1342 46 1 4.1827 3.7878 -2.5325 47 1 7.7865 5.9721 -2.8779 48 1 5.2384 6.0469 -4.7049 49 1 6.7017 7.1612 -4.8388 50 1 8.1957 5.1515 -5.2429 51 1 6.7324 4.0369 -5.1093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343901870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:51 Heat of formation + Delta-G solvation = -5.815403 kcal Electronic energy + Delta-G solvation = -30651.223735 eV Core-core repulsion = 26587.613532 eV Total energy + Delta-G solvation = -4063.610204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.01662 -39.93345 -39.17076 -38.11992 -36.82744 -35.06890 -34.26088 -33.47167 -32.66079 -31.42425 -29.92961 -27.95036 -26.84821 -26.78211 -23.84196 -23.66342 -23.42367 -23.23064 -22.81369 -21.33788 -20.85663 -19.23248 -18.55300 -17.85996 -17.55323 -17.34350 -17.11645 -16.67300 -16.37297 -16.34344 -15.72908 -15.59769 -15.48972 -15.26464 -14.86593 -14.76427 -14.39017 -13.99209 -13.92966 -13.43815 -13.27806 -13.19929 -13.12531 -12.97298 -12.80301 -12.76806 -12.61924 -12.53511 -12.40586 -12.35993 -12.11604 -12.01844 -11.93602 -11.80617 -11.43586 -11.36328 -11.28284 -11.05586 -10.71878 -10.59408 -10.53691 -10.10239 -9.27487 -8.12985 -6.39536 0.75809 1.18851 1.42967 1.45303 1.55451 1.79927 2.40011 2.42279 2.75458 3.01296 3.13433 3.41591 3.59820 3.72293 3.80499 3.90413 3.94750 4.01070 4.07143 4.08812 4.17265 4.19246 4.22682 4.30114 4.39532 4.43469 4.50917 4.52004 4.54013 4.56239 4.64124 4.67882 4.75906 4.77989 4.88139 4.94111 4.97752 5.04271 5.05962 5.09668 5.19343 5.22684 5.28877 5.51500 5.62411 5.65865 5.70888 6.02526 6.19125 6.28006 6.72113 7.32686 7.50380 7.74797 8.91603 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007044 B = 0.004018 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3974.333006 B = 6967.260449 C =10244.852204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.412 6.412 4 C 0.071 3.929 5 C -0.124 4.124 6 C 0.111 3.889 7 N -0.457 5.457 8 C 0.210 3.790 9 C -0.046 4.046 10 C 0.246 3.754 11 H 0.010 0.990 12 O -0.572 6.572 13 C -0.582 4.582 14 H 0.070 0.930 15 C 0.028 3.972 16 N -0.900 5.900 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.264 1.264 21 N -0.339 5.339 22 N -0.352 5.352 23 C 0.345 3.655 24 N -0.422 5.422 25 C 0.019 3.981 26 C 0.001 3.999 27 C -0.196 4.196 28 C -0.140 4.140 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.355 0.645 43 H 0.261 0.739 44 H 0.034 0.966 45 H 0.115 0.885 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.113 0.887 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -9.463 -18.066 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.332 6.332 4 C -0.006 4.006 5 C -0.163 4.163 6 C -0.011 4.011 7 N -0.150 5.150 8 C -0.059 4.059 9 C -0.086 4.086 10 C 0.187 3.813 11 H 0.028 0.972 12 O -0.377 6.377 13 C -0.620 4.620 14 H 0.088 0.912 15 C -0.175 4.175 16 N -0.537 5.537 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.215 1.215 20 H -0.188 1.188 21 N -0.178 5.178 22 N -0.196 5.196 23 C -0.012 4.012 24 N -0.145 5.145 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.235 4.235 28 C -0.178 4.178 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.201 0.799 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.134 0.866 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.132 0.868 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.032 -8.042 -18.293 23.856 hybrid contribution -0.430 -0.724 1.468 1.692 sum -13.462 -8.766 -16.824 23.262 Atomic orbital electron populations 1.21776 0.93187 1.03329 1.02543 1.22664 0.96146 0.82676 1.01120 1.87839 1.21441 1.28283 1.95687 1.22298 0.81292 0.94909 1.02142 1.21783 0.93111 0.97661 1.03725 1.21983 0.95829 0.76687 1.06614 1.46121 1.51592 1.11985 1.05259 1.25109 1.01202 0.85789 0.93826 1.20904 1.01008 1.03707 0.83008 1.19042 0.88997 0.82625 0.90649 0.97214 1.86603 1.48984 1.20834 1.81260 1.21970 0.97705 1.48933 0.93379 0.91158 1.25894 0.94511 0.93774 1.03299 1.70237 1.02249 1.44320 1.36903 0.85539 0.77550 0.78955 0.79419 1.19365 1.21512 1.18790 1.73885 1.19744 1.22366 1.01819 1.74426 1.24301 1.14914 1.05970 1.22652 1.02272 0.87650 0.88622 1.58677 1.13435 1.46841 0.95536 1.22835 0.85701 1.01499 1.02647 1.22450 0.99102 1.00719 0.88446 1.23597 1.00422 0.98073 1.01396 1.23261 1.02085 0.98598 0.93806 0.92213 0.89147 0.92722 0.91989 0.92714 0.90966 0.91850 0.91417 0.90750 0.87773 0.86610 0.88830 0.88227 0.79876 0.93051 0.94718 0.86634 0.89887 0.88384 0.87043 0.88094 0.86827 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -8.26 10.34 -148.98 -1.54 -9.80 16 4 C 0.07 1.20 5.94 71.98 0.43 1.63 16 5 C -0.12 -2.59 5.84 30.59 0.18 -2.41 16 6 C 0.11 2.73 5.78 86.38 0.50 3.23 16 7 N -0.46 -15.42 2.81 -514.85 -1.45 -16.86 16 8 C 0.21 8.58 7.09 137.64 0.98 9.56 16 9 C -0.05 -1.86 5.15 29.85 0.15 -1.71 16 10 C 0.25 12.32 2.81 29.85 0.08 12.41 16 11 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 12 O -0.57 -27.66 11.56 -148.98 -1.72 -29.38 16 13 C -0.58 -30.65 8.76 25.60 0.22 -30.43 16 14 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 15 C 0.03 1.52 5.40 84.65 0.46 1.98 16 16 N -0.90 -53.33 12.84 21.45 0.28 -53.06 16 17 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 21 N -0.34 -15.64 12.18 -49.54 -0.60 -16.25 16 22 N -0.35 -14.89 11.30 -58.01 -0.66 -15.55 16 23 C 0.35 12.02 6.85 260.11 1.78 13.80 16 24 N -0.42 -10.99 4.94 -706.80 -3.49 -14.49 16 25 C 0.02 0.36 8.21 127.69 1.05 1.41 16 26 C 0.00 0.03 5.70 44.92 0.26 0.29 16 27 C -0.20 -3.51 9.52 30.59 0.29 -3.22 16 28 C -0.14 -2.20 9.96 30.59 0.30 -1.89 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 1.62 7.75 -2.39 -0.02 1.60 16 37 H 0.07 1.55 6.10 -2.39 -0.01 1.53 16 38 H 0.10 2.70 5.61 -2.39 -0.01 2.69 16 39 H 0.12 2.45 8.09 -2.38 -0.02 2.43 16 40 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 41 H 0.10 3.39 7.58 -2.38 -0.02 3.37 16 42 H 0.36 14.23 7.70 -74.05 -0.57 13.66 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.03 0.73 7.59 -2.39 -0.02 0.72 16 45 H 0.12 1.45 6.20 -2.38 -0.01 1.44 16 46 H 0.08 1.43 5.94 -2.39 -0.01 1.42 16 47 H 0.10 3.03 7.72 -2.39 -0.02 3.01 16 48 H 0.11 1.72 5.93 -2.38 -0.01 1.71 16 49 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.12 1.43 7.58 -2.39 -0.02 1.42 16 Total: -1.00 -75.06 410.19 1.10 -73.96 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.36 Total: 32.46 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 7.90 Total: 4.70 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -5.92 Total: -116.20 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -3.26 Total: -39.17 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.06 1.10 -73.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343901870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.140 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds