Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46769 * 124.34888 * 2 1 4 4 C 1.54482 * 105.47402 * 197.03749 * 3 2 1 5 5 H 1.09004 * 110.96747 * 92.73607 * 4 3 2 6 6 C 1.52991 * 110.97088 * 216.46435 * 4 3 2 7 7 C 1.52995 * 109.47485 * 181.90986 * 6 4 3 8 8 N 1.46500 * 109.47634 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00611 * 180.02562 * 8 7 6 10 10 O 1.21594 * 119.99349 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00342 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99646 * 179.72207 * 11 9 8 13 13 C 1.53037 * 109.46140 * 275.34018 * 12 11 9 14 14 C 1.53192 * 109.31244 * 178.61668 * 13 12 11 15 15 N 1.46925 * 108.77333 * 54.63854 * 14 13 12 16 16 C 1.36936 * 120.63042 * 126.41603 * 15 14 13 17 17 H 1.08008 * 120.00013 * 207.66419 * 16 15 14 18 18 C 1.38811 * 120.00352 * 27.65473 * 16 15 14 19 19 N 1.31616 * 119.99980 * 17.37306 * 18 16 15 20 20 Si 1.86801 * 120.00321 * 197.36971 * 18 16 15 21 21 H 1.48493 * 109.47198 * 89.99977 * 20 18 16 22 22 H 1.48496 * 109.47233 * 210.00417 * 20 18 16 23 23 H 1.48501 * 109.46933 * 330.00260 * 20 18 16 24 24 C 1.46924 * 118.73925 * 306.38728 * 15 14 13 25 25 C 1.53045 * 109.45597 * 155.27304 * 12 11 9 26 26 C 1.54634 * 101.79893 * 334.60166 * 4 3 2 27 27 C 1.34424 * 124.35405 * 180.02562 * 2 1 3 28 28 O 1.21278 * 124.93608 * 359.60399 * 27 2 1 29 29 H 1.09001 * 109.46927 * 90.00392 * 1 2 3 30 30 H 1.08994 * 109.46779 * 210.00146 * 1 2 3 31 31 H 1.09000 * 109.46926 * 330.00150 * 1 2 3 32 32 H 1.08990 * 110.25047 * 78.03562 * 3 2 1 33 33 H 1.09001 * 110.24111 * 316.03293 * 3 2 1 34 34 H 1.09001 * 109.47211 * 61.90540 * 6 4 3 35 35 H 1.09007 * 109.47285 * 301.91120 * 6 4 3 36 36 H 1.09001 * 109.47260 * 59.99584 * 7 6 4 37 37 H 1.08997 * 109.47492 * 300.00117 * 7 6 4 38 38 H 0.97006 * 119.99871 * 0.02562 * 8 7 6 39 39 H 0.96994 * 119.99677 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46331 * 35.30576 * 12 11 9 41 41 H 1.08997 * 109.49818 * 298.56771 * 13 12 11 42 42 H 1.08998 * 109.50067 * 58.66598 * 13 12 11 43 43 H 1.08997 * 109.58884 * 294.84685 * 14 13 12 44 44 H 1.08999 * 109.58632 * 174.42047 * 14 13 12 45 45 H 0.97001 * 120.00548 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58576 * 293.82337 * 24 15 14 47 47 H 1.08998 * 109.70517 * 173.47083 * 24 15 14 48 48 H 1.08991 * 109.49897 * 301.33577 * 25 12 11 49 49 H 1.09000 * 109.49657 * 61.43627 * 25 12 11 50 50 H 1.08995 * 110.48501 * 143.45600 * 26 4 3 51 51 H 1.09000 * 110.48585 * 266.10437 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 1 3.8266 0.8457 -1.5146 6 6 4.7881 1.5240 0.3108 7 6 6.1650 1.0731 -0.1807 8 7 7.2060 1.8157 0.5342 9 6 8.5058 1.5837 0.2636 10 8 8.8144 0.7575 -0.5735 11 7 9.4635 2.2666 0.9216 12 6 10.8764 2.0099 0.6318 13 6 11.3571 0.8141 1.4570 14 6 12.8250 0.5271 1.1257 15 7 13.6050 1.7550 1.3317 16 6 14.7118 1.7515 2.1380 17 1 15.0144 2.6566 2.6438 18 6 15.4448 0.5847 2.3056 19 7 15.3031 -0.4094 1.4547 20 14 16.6324 0.4253 3.7386 21 1 15.9213 -0.1478 4.9095 22 1 17.7543 -0.4686 3.3546 23 1 17.1658 1.7657 4.0909 24 6 13.1753 2.9867 0.6557 25 6 11.7035 3.2461 0.9922 26 6 3.6905 -0.7380 -0.0117 27 6 2.2236 -1.1098 -0.0005 28 8 1.7947 -2.2442 0.0059 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.3310 1.6428 1.0003 33 1 1.8982 1.9384 -0.7100 34 1 4.7026 1.3305 1.3801 35 1 4.6671 2.5911 0.1238 36 1 6.2504 1.2665 -1.2500 37 1 6.2861 0.0061 0.0062 38 1 6.9598 2.4745 1.2023 39 1 9.2173 2.9253 1.5896 40 1 10.9954 1.7901 -0.4291 41 1 11.2617 1.0426 2.5185 42 1 10.7523 -0.0604 1.2169 43 1 12.9098 0.2103 0.0862 44 1 13.2007 -0.2586 1.7811 45 1 15.8155 -1.2247 1.5715 46 1 13.2887 2.8705 -0.4222 47 1 13.7818 3.8249 0.9986 48 1 11.3452 4.1026 0.4213 49 1 11.6048 3.4517 2.0581 50 1 4.2331 -1.3453 -0.7361 51 1 4.1209 -0.8537 0.9831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354150290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = -48.387299 kcal Electronic energy + Delta-G solvation = -28970.967801 eV Core-core repulsion = 24905.511541 eV Total energy + Delta-G solvation = -4065.456260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90620 -39.92230 -37.69405 -37.18245 -35.60109 -34.32380 -33.69081 -32.07633 -30.37136 -29.86725 -29.17377 -28.01707 -26.54824 -24.95643 -23.48254 -22.21083 -21.89277 -21.28988 -20.48117 -19.99029 -19.40589 -18.08206 -17.32178 -16.80219 -16.76010 -16.22336 -15.85108 -15.62275 -14.91365 -14.73911 -14.55200 -14.28497 -14.12923 -13.94377 -13.77865 -13.58921 -13.47050 -13.00859 -12.93781 -12.89837 -12.73652 -12.52811 -12.48099 -12.31474 -11.79592 -11.46230 -11.42370 -11.33445 -11.10218 -10.89907 -10.72897 -10.36164 -10.20801 -10.18488 -10.08315 -9.96207 -9.73320 -9.53351 -9.21989 -9.16658 -8.59726 -8.36906 -6.67179 -5.76453 -3.19263 2.19335 2.51747 2.79093 3.39197 3.40155 3.45839 3.47297 3.81547 3.85573 4.09349 4.35407 4.46513 4.50983 4.69085 4.72463 4.74052 4.85335 4.98215 5.02405 5.11376 5.16923 5.22962 5.32149 5.38293 5.41974 5.48343 5.49860 5.67017 5.68732 5.72306 5.86309 6.00521 6.11547 6.26152 6.38970 6.41587 6.48016 6.61581 6.61707 6.67661 6.79012 6.92479 6.97214 7.12401 7.42070 7.71543 7.75167 7.81538 8.15864 8.46905 8.78350 9.22932 9.86420 10.43014 11.31974 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.001673 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.291091 B =16728.516862 C =17348.872284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.108 3.892 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.120 4.120 7 C 0.138 3.862 8 N -0.754 5.754 9 C 0.700 3.300 10 O -0.588 6.588 11 N -0.740 5.740 12 C 0.169 3.831 13 C -0.147 4.147 14 C 0.173 3.827 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C -0.138 4.138 26 C -0.154 4.154 27 C 0.516 3.484 28 O -0.532 6.532 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.393 0.607 39 H 0.389 0.611 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.679 9.006 -1.600 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.363 5.363 3 C -0.016 4.016 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.159 4.159 7 C 0.014 3.986 8 N -0.411 5.411 9 C 0.400 3.600 10 O -0.465 6.465 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.178 4.178 26 C -0.194 4.194 27 C 0.304 3.696 28 O -0.408 6.408 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.226 0.774 39 H 0.222 0.778 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.125 0.875 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -28.581 7.464 -2.406 29.637 hybrid contribution 0.234 0.563 1.395 1.523 sum -28.347 8.027 -1.011 29.479 Atomic orbital electron populations 1.21542 0.78044 1.03149 1.01946 1.48205 1.06543 1.07452 1.74058 1.22168 0.90015 0.87245 1.02126 1.22084 0.93512 0.94168 1.01779 0.88399 1.21781 0.92958 1.00581 1.00530 1.21116 0.84565 0.96439 0.96528 1.45107 1.04630 1.45800 1.45555 1.16012 0.80488 0.81703 0.81776 1.90944 1.81544 1.37219 1.36830 1.45524 1.06518 1.43683 1.43595 1.20904 0.76393 0.95860 1.00375 1.22574 1.00391 0.96691 0.99052 1.20771 0.85305 0.89989 0.99264 1.44105 1.28943 1.04837 1.53624 1.19187 1.02822 0.96931 1.19493 0.91622 1.25050 0.97945 0.98200 0.98432 1.70038 1.43396 1.06440 1.34602 0.86292 0.80396 0.77572 0.82508 1.21498 1.21775 1.20460 1.20834 0.90933 0.90860 0.95256 1.22339 0.98522 0.95746 1.01200 1.22525 0.94345 0.97131 1.05380 1.21019 0.89426 0.84256 0.74893 1.90739 1.78762 1.21217 1.50120 0.92542 0.90667 0.90996 0.90729 0.90116 0.90590 0.90353 0.91557 0.91423 0.77379 0.77780 0.90106 0.92851 0.92829 0.96114 0.89275 0.93572 0.96191 0.92370 0.92698 0.91942 0.87472 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 10.96 59.85 0.66 1.13 16 2 N -0.63 -4.11 3.33 -180.26 -0.60 -4.71 16 3 C 0.11 0.38 6.92 -3.12 -0.02 0.36 16 4 C -0.10 -0.38 3.15 -88.99 -0.28 -0.66 16 5 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 6 C -0.12 -0.45 4.67 -26.74 -0.13 -0.57 16 7 C 0.14 1.07 5.55 -4.04 -0.02 1.04 16 8 N -0.75 -6.99 5.56 -65.23 -0.36 -7.35 16 9 C 0.70 10.13 8.53 -86.92 -0.74 9.38 16 10 O -0.59 -11.37 16.01 5.28 0.08 -11.28 16 11 N -0.74 -10.04 5.08 -58.64 -0.30 -10.34 16 12 C 0.17 2.92 2.41 -67.89 -0.16 2.75 16 13 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 14 C 0.17 4.24 5.31 -3.71 -0.02 4.22 16 15 N -0.59 -14.75 2.99 -172.32 -0.52 -15.27 16 16 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -26.41 11.19 55.49 0.62 -25.79 16 20 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 3.03 6.51 -3.71 -0.02 3.00 16 25 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 26 C -0.15 -0.99 5.74 -26.71 -0.15 -1.14 16 27 C 0.52 4.87 8.02 -10.83 -0.09 4.79 16 28 O -0.53 -7.44 17.59 5.56 0.10 -7.34 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.19 7.89 -51.93 -0.41 -0.22 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.25 8.01 -51.93 -0.42 -0.17 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.62 7.62 -51.93 -0.40 0.23 16 38 H 0.39 2.37 8.49 -40.82 -0.35 2.02 16 39 H 0.39 3.99 8.62 -40.82 -0.35 3.64 16 40 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.11 0.64 7.81 -51.93 -0.41 0.24 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -36.69 406.09 -10.30 -46.99 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.90 Total: 0.62 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.51 Total: 11.71 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -1.16 Total: -63.45 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.69 -10.30 -46.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354150290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.401 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds