Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46769 * 124.34888 * 2 1 4 4 C 1.54482 * 105.47402 * 197.03749 * 3 2 1 5 5 H 1.09004 * 110.96747 * 92.73607 * 4 3 2 6 6 C 1.52991 * 110.97088 * 216.46435 * 4 3 2 7 7 C 1.52995 * 109.47485 * 181.90986 * 6 4 3 8 8 N 1.46500 * 109.47634 * 179.97438 * 7 6 4 9 9 C 1.34777 * 120.00611 * 180.02562 * 8 7 6 10 10 O 1.21594 * 119.99349 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00342 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99646 * 179.72207 * 11 9 8 13 13 C 1.53037 * 109.46140 * 275.34018 * 12 11 9 14 14 C 1.53192 * 109.31244 * 178.61668 * 13 12 11 15 15 N 1.46925 * 108.77333 * 54.63854 * 14 13 12 16 16 C 1.36936 * 120.63042 * 126.41603 * 15 14 13 17 17 H 1.08008 * 120.00013 * 207.66419 * 16 15 14 18 18 C 1.38811 * 120.00352 * 27.65473 * 16 15 14 19 19 N 1.31616 * 119.99980 * 17.37306 * 18 16 15 20 20 Si 1.86801 * 120.00321 * 197.36971 * 18 16 15 21 21 H 1.48493 * 109.47198 * 89.99977 * 20 18 16 22 22 H 1.48496 * 109.47233 * 210.00417 * 20 18 16 23 23 H 1.48501 * 109.46933 * 330.00260 * 20 18 16 24 24 C 1.46924 * 118.73925 * 306.38728 * 15 14 13 25 25 C 1.53045 * 109.45597 * 155.27304 * 12 11 9 26 26 C 1.54634 * 101.79893 * 334.60166 * 4 3 2 27 27 C 1.34424 * 124.35405 * 180.02562 * 2 1 3 28 28 O 1.21278 * 124.93608 * 359.60399 * 27 2 1 29 29 H 1.09001 * 109.46927 * 90.00392 * 1 2 3 30 30 H 1.08994 * 109.46779 * 210.00146 * 1 2 3 31 31 H 1.09000 * 109.46926 * 330.00150 * 1 2 3 32 32 H 1.08990 * 110.25047 * 78.03562 * 3 2 1 33 33 H 1.09001 * 110.24111 * 316.03293 * 3 2 1 34 34 H 1.09001 * 109.47211 * 61.90540 * 6 4 3 35 35 H 1.09007 * 109.47285 * 301.91120 * 6 4 3 36 36 H 1.09001 * 109.47260 * 59.99584 * 7 6 4 37 37 H 1.08997 * 109.47492 * 300.00117 * 7 6 4 38 38 H 0.97006 * 119.99871 * 0.02562 * 8 7 6 39 39 H 0.96994 * 119.99677 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46331 * 35.30576 * 12 11 9 41 41 H 1.08997 * 109.49818 * 298.56771 * 13 12 11 42 42 H 1.08998 * 109.50067 * 58.66598 * 13 12 11 43 43 H 1.08997 * 109.58884 * 294.84685 * 14 13 12 44 44 H 1.08999 * 109.58632 * 174.42047 * 14 13 12 45 45 H 0.97001 * 120.00548 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.58576 * 293.82337 * 24 15 14 47 47 H 1.08998 * 109.70517 * 173.47083 * 24 15 14 48 48 H 1.08991 * 109.49897 * 301.33577 * 25 12 11 49 49 H 1.09000 * 109.49657 * 61.43627 * 25 12 11 50 50 H 1.08995 * 110.48501 * 143.45600 * 26 4 3 51 51 H 1.09000 * 110.48585 * 266.10437 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 1 3.8266 0.8457 -1.5146 6 6 4.7881 1.5240 0.3108 7 6 6.1650 1.0731 -0.1807 8 7 7.2060 1.8157 0.5342 9 6 8.5058 1.5837 0.2636 10 8 8.8144 0.7575 -0.5735 11 7 9.4635 2.2666 0.9216 12 6 10.8764 2.0099 0.6318 13 6 11.3571 0.8141 1.4570 14 6 12.8250 0.5271 1.1257 15 7 13.6050 1.7550 1.3317 16 6 14.7118 1.7515 2.1380 17 1 15.0144 2.6566 2.6438 18 6 15.4448 0.5847 2.3056 19 7 15.3031 -0.4094 1.4547 20 14 16.6324 0.4253 3.7386 21 1 15.9213 -0.1478 4.9095 22 1 17.7543 -0.4686 3.3546 23 1 17.1658 1.7657 4.0909 24 6 13.1753 2.9867 0.6557 25 6 11.7035 3.2461 0.9922 26 6 3.6905 -0.7380 -0.0117 27 6 2.2236 -1.1098 -0.0005 28 8 1.7947 -2.2442 0.0059 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.3310 1.6428 1.0003 33 1 1.8982 1.9384 -0.7100 34 1 4.7026 1.3305 1.3801 35 1 4.6671 2.5911 0.1238 36 1 6.2504 1.2665 -1.2500 37 1 6.2861 0.0061 0.0062 38 1 6.9598 2.4745 1.2023 39 1 9.2173 2.9253 1.5896 40 1 10.9954 1.7901 -0.4291 41 1 11.2617 1.0426 2.5185 42 1 10.7523 -0.0604 1.2169 43 1 12.9098 0.2103 0.0862 44 1 13.2007 -0.2586 1.7811 45 1 15.8155 -1.2247 1.5715 46 1 13.2887 2.8705 -0.4222 47 1 13.7818 3.8249 0.9986 48 1 11.3452 4.1026 0.4213 49 1 11.6048 3.4517 2.0581 50 1 4.2331 -1.3453 -0.7361 51 1 4.1209 -0.8537 0.9831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354150290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = -75.801732 kcal Electronic energy + Delta-G solvation = -28972.156580 eV Core-core repulsion = 24905.511541 eV Total energy + Delta-G solvation = -4066.645039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48685 -41.07467 -39.12775 -37.99882 -36.45046 -35.84982 -34.45937 -33.73710 -31.77703 -31.33995 -30.30142 -28.49439 -27.25460 -26.61002 -24.31642 -23.86884 -23.33502 -21.95006 -21.41539 -21.00538 -20.57353 -19.25073 -18.62547 -17.87350 -17.40583 -17.29368 -16.76343 -16.58655 -16.31041 -15.82121 -15.57808 -15.40575 -15.32732 -15.18292 -14.73726 -14.67628 -14.51948 -14.46736 -14.12446 -13.97924 -13.34412 -13.32096 -13.17999 -13.14335 -13.00029 -12.97974 -12.60927 -12.59294 -12.27569 -12.09334 -12.01185 -11.83247 -11.82035 -11.75109 -11.50257 -11.39760 -11.14384 -10.87800 -10.56922 -10.23523 -9.72376 -9.65009 -8.70276 -7.85679 -5.31688 1.48621 1.50076 1.50302 1.59123 1.76861 2.10586 2.25717 2.52992 3.26429 3.32380 3.39914 3.50083 3.69632 3.80029 3.92518 4.06446 4.13744 4.25837 4.33516 4.38510 4.38574 4.49445 4.51079 4.59956 4.69406 4.70312 4.75014 4.78117 4.83884 4.85301 4.87942 4.91295 5.02945 5.09439 5.12506 5.16834 5.23453 5.34981 5.35330 5.48823 5.56463 5.60874 5.65739 5.67252 5.72079 6.07443 6.14458 6.40004 7.10484 7.14818 7.24428 7.71214 7.86399 8.38976 9.21286 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.001673 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.291091 B =16728.516862 C =17348.872284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.624 5.624 3 C 0.107 3.893 4 C -0.086 4.086 5 H 0.102 0.898 6 C -0.104 4.104 7 C 0.133 3.867 8 N -0.730 5.730 9 C 0.695 3.305 10 O -0.642 6.642 11 N -0.725 5.725 12 C 0.181 3.819 13 C -0.130 4.130 14 C 0.182 3.818 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.075 0.925 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.299 1.299 23 H -0.263 1.263 24 C 0.140 3.860 25 C -0.119 4.119 26 C -0.153 4.153 27 C 0.501 3.499 28 O -0.593 6.593 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.414 0.586 39 H 0.412 0.588 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.041 0.959 43 H -0.013 1.013 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.011 0.989 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.530 13.011 -0.068 33.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.357 5.357 3 C -0.014 4.014 4 C -0.106 4.106 5 H 0.120 0.880 6 C -0.141 4.141 7 C 0.009 3.991 8 N -0.387 5.387 9 C 0.394 3.606 10 O -0.524 6.524 11 N -0.380 5.380 12 C 0.075 3.925 13 C -0.170 4.170 14 C 0.055 3.945 15 N -0.332 5.332 16 C -0.390 4.390 17 H 0.093 0.907 18 C -0.250 4.250 19 N -0.586 5.586 20 Si 0.797 3.203 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.188 1.188 24 C 0.014 3.986 25 C -0.159 4.159 26 C -0.193 4.193 27 C 0.291 3.709 28 O -0.474 6.474 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.006 0.994 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.114 0.886 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -30.507 11.607 -0.830 32.651 hybrid contribution 0.754 -0.641 0.848 1.304 sum -29.753 10.965 0.019 31.709 Atomic orbital electron populations 1.21690 0.77301 1.03737 1.02518 1.48414 1.07367 1.07759 1.72151 1.22413 0.88775 0.86166 1.04095 1.22052 0.94295 0.92079 1.02143 0.88019 1.21680 0.89692 1.01823 1.00946 1.21254 0.86240 0.95450 0.96137 1.44903 1.02863 1.45612 1.45365 1.16264 0.81975 0.81100 0.81237 1.90922 1.82649 1.39568 1.39230 1.45071 1.04772 1.44083 1.44095 1.20467 0.78756 0.95178 0.98075 1.22312 0.96963 0.97873 0.99879 1.20474 0.88117 0.89528 0.96386 1.44349 1.28732 1.06056 1.54087 1.19600 1.02956 0.97126 1.19358 0.90701 1.25866 1.00175 0.98136 1.00861 1.70215 1.44858 1.06890 1.36591 0.85236 0.77973 0.77856 0.79209 1.21343 1.22583 1.18780 1.21061 0.93971 0.89189 0.94376 1.22121 0.94997 0.96130 1.02622 1.22538 0.92295 0.99026 1.05483 1.21569 0.90944 0.84083 0.74344 1.90694 1.79916 1.23621 1.53172 0.92009 0.92616 0.87864 0.88589 0.87693 0.89248 0.87599 0.92570 0.93386 0.74890 0.75183 0.92884 0.92072 0.93992 0.99450 0.92778 0.94246 0.97136 0.91295 0.88936 0.90527 0.88575 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.96 127.77 1.40 2.16 16 2 N -0.62 -7.15 3.33 -842.82 -2.81 -9.96 16 3 C 0.11 0.34 6.92 86.83 0.60 0.95 16 4 C -0.09 -0.45 3.15 -9.74 -0.03 -0.48 16 5 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 6 C -0.10 -0.36 4.67 30.59 0.14 -0.21 16 7 C 0.13 1.79 5.55 86.38 0.48 2.26 16 8 N -0.73 -11.39 5.56 -478.54 -2.66 -14.06 16 9 C 0.69 18.93 8.53 179.05 1.53 20.46 16 10 O -0.64 -25.02 16.01 -4.01 -0.06 -25.08 16 11 N -0.73 -17.76 5.08 -457.68 -2.33 -20.09 16 12 C 0.18 6.04 2.41 45.02 0.11 6.15 16 13 C -0.13 -5.25 5.65 30.67 0.17 -5.08 16 14 C 0.18 9.27 5.31 86.36 0.46 9.72 16 15 N -0.61 -30.55 2.99 -699.10 -2.09 -32.65 16 16 C -0.26 -14.19 9.59 84.03 0.81 -13.38 16 17 H 0.08 3.88 7.89 -2.91 -0.02 3.85 16 18 C -0.06 -3.12 4.91 84.86 0.42 -2.71 16 19 N -0.94 -57.21 11.19 21.65 0.24 -56.97 16 20 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.14 5.54 6.51 86.36 0.56 6.10 16 25 C -0.12 -3.52 5.55 30.67 0.17 -3.35 16 26 C -0.15 -1.90 5.74 30.61 0.18 -1.72 16 27 C 0.50 9.58 8.02 87.92 0.71 10.29 16 28 O -0.59 -17.70 17.59 -3.02 -0.05 -17.75 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.71 7.92 -2.39 -0.02 0.69 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.10 -0.01 7.89 -2.39 -0.02 -0.03 16 33 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.09 0.16 8.01 -2.39 -0.02 0.14 16 35 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 0.86 7.62 -2.39 -0.02 0.84 16 38 H 0.41 3.11 8.49 -92.70 -0.79 2.32 16 39 H 0.41 6.63 8.62 -92.71 -0.80 5.83 16 40 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.05 3.12 6.04 -2.39 -0.01 3.10 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 48 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.11 1.26 7.81 -2.39 -0.02 1.24 16 Total: -1.00 -86.47 406.09 -0.70 -87.16 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.66 Total: 11.19 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: 7.70 Total: 31.17 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -9.65 Total: -133.72 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.12 Total: -42.83 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -86.47 -0.70 -87.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354150290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -86.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds