Wall clock time and date at job start Tue Mar 31 2020 21:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47221 * 2 1 4 4 C 1.36742 * 127.13977 * 82.44450 * 3 2 1 5 5 C 1.50697 * 126.34486 * 359.93870 * 4 3 2 6 6 C 1.53002 * 109.46653 * 94.37805 * 5 4 3 7 7 H 1.08998 * 109.47756 * 54.70812 * 6 5 4 8 8 O 1.42907 * 109.46789 * 294.70665 * 6 5 4 9 9 C 1.50702 * 109.46792 * 174.71092 * 6 5 4 10 10 H 1.07998 * 120.00278 * 359.97438 * 9 6 5 11 11 C 1.37881 * 120.00014 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99611 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99967 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.47085 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46756 * 120.00528 * 13 11 9 16 16 H 1.48498 * 109.47041 * 240.00224 * 13 11 9 17 17 N 1.30297 * 107.30229 * 179.97438 * 4 3 2 18 18 N 1.28527 * 110.05717 * 359.72419 * 17 4 3 19 19 C 1.31221 * 109.86000 * 0.45440 * 18 17 4 20 20 N 1.38569 * 126.47501 * 179.82696 * 19 18 17 21 21 C 1.46905 * 110.99928 * 254.42842 * 20 19 18 22 22 C 1.52998 * 109.47513 * 187.28463 * 21 20 19 23 23 C 1.52994 * 109.47236 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47236 * 180.02562 * 23 22 21 25 25 O 1.42894 * 109.47493 * 180.02562 * 24 23 22 26 26 C 1.46905 * 111.00007 * 18.37987 * 20 19 18 27 27 C 1.52992 * 117.49630 * 124.67329 * 26 20 19 28 28 C 1.52998 * 117.49559 * 56.05012 * 26 20 19 29 29 H 1.08998 * 109.47480 * 289.50978 * 1 2 3 30 30 H 1.09000 * 109.47084 * 49.51102 * 1 2 3 31 31 H 1.08998 * 109.47030 * 169.50933 * 1 2 3 32 32 H 1.08996 * 109.47123 * 239.99573 * 2 1 3 33 33 H 1.09006 * 109.46848 * 119.99988 * 2 1 3 34 34 H 1.09004 * 109.46880 * 214.36818 * 5 4 3 35 35 H 1.08995 * 109.47517 * 334.37515 * 5 4 3 36 36 H 0.96701 * 113.99575 * 303.41542 * 8 6 5 37 37 H 0.96999 * 119.99614 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.46738 * 307.28822 * 21 20 19 39 39 H 1.09000 * 109.46807 * 67.28679 * 21 20 19 40 40 H 1.08997 * 109.47150 * 300.00677 * 22 21 20 41 41 H 1.09002 * 109.46789 * 59.99746 * 22 21 20 42 42 H 1.09005 * 109.47363 * 300.00334 * 23 22 21 43 43 H 1.09000 * 109.46878 * 60.00342 * 23 22 21 44 44 H 1.08997 * 109.47150 * 300.00760 * 24 23 22 45 45 H 1.09002 * 109.46789 * 59.99830 * 24 23 22 46 46 H 0.96701 * 114.00553 * 180.02562 * 25 24 23 47 47 H 1.09001 * 115.54516 * 270.38019 * 26 20 19 48 48 H 1.09001 * 117.50502 * 359.97438 * 27 26 20 49 49 H 1.09007 * 117.49904 * 145.02256 * 27 26 20 50 50 H 1.09004 * 117.49605 * 214.97507 * 28 26 20 51 51 H 1.08995 * 117.49919 * 0.02562 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1584 2.2073 1.0806 5 6 1.8353 1.8672 2.5127 6 6 3.1011 1.3766 3.2183 7 1 3.8889 2.1223 3.1116 8 8 3.5274 0.1457 2.6305 9 6 2.8090 1.1601 4.6808 10 1 1.8197 1.3536 5.0684 11 6 3.8049 0.7151 5.5243 12 7 5.0098 0.4800 5.0524 13 14 3.4430 0.4475 7.3372 14 1 2.0228 0.7820 7.6131 15 1 3.6935 -0.9737 7.6874 16 1 4.3251 1.3210 8.1522 17 7 2.6223 3.3433 0.6423 18 7 2.7890 3.2896 -0.6309 19 6 2.4284 2.1099 -1.0784 20 7 2.4632 1.6828 -2.3961 21 6 1.1118 1.6363 -2.9703 22 6 1.1685 0.9918 -4.3568 23 6 -0.2390 0.9428 -4.9544 24 6 -0.1824 0.2978 -6.3406 25 8 -1.4969 0.2525 -6.8991 26 6 3.3486 2.5339 -3.2022 27 6 4.4773 1.8477 -3.9742 28 6 4.7977 2.6873 -2.7359 29 1 -0.3634 0.3432 0.9686 30 1 -0.3633 0.6673 -0.7816 31 1 -0.3633 -1.0105 -0.1871 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.4571 2.7545 3.0204 35 1 1.0782 1.0835 2.5381 36 1 2.8553 -0.5494 2.6425 37 1 5.7105 0.1673 5.6458 38 1 0.4619 1.0480 -2.3225 39 1 0.7186 2.6492 -3.0563 40 1 1.8185 1.5800 -5.0045 41 1 1.5618 -0.0211 -4.2707 42 1 -0.8886 0.3543 -4.3064 43 1 -0.6326 1.9556 -5.0404 44 1 0.4674 0.8858 -6.9887 45 1 0.2112 -0.7151 -6.2542 46 1 -1.5368 -0.1455 -7.7795 47 1 2.8747 3.3991 -3.6659 48 1 4.5633 0.7649 -3.8837 49 1 4.7463 2.2614 -4.9461 50 1 5.2774 3.6534 -2.8932 51 1 5.0941 2.1565 -1.8312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356502275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:49 Heat of formation + Delta-G solvation = -22.920826 kcal Electronic energy + Delta-G solvation = -30670.844492 eV Core-core repulsion = 26606.492542 eV Total energy + Delta-G solvation = -4064.351951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.95560 -39.86444 -38.13516 -37.99553 -36.75514 -35.83325 -34.35113 -34.23411 -32.72841 -31.43049 -29.98725 -28.34543 -27.06849 -25.01398 -24.26911 -23.80317 -23.43457 -22.99533 -21.99617 -21.23777 -20.92298 -19.16042 -18.33048 -17.98713 -17.58940 -17.22479 -16.99011 -16.67515 -16.57065 -16.28926 -15.95275 -15.55934 -15.24594 -15.11206 -14.89529 -14.62285 -14.40301 -14.04546 -13.90745 -13.44333 -13.33546 -13.20939 -12.94229 -12.78415 -12.77596 -12.69285 -12.58382 -12.41357 -12.34600 -12.29406 -12.06053 -11.99171 -11.84904 -11.45480 -11.32657 -11.26501 -11.23119 -11.00516 -10.82855 -10.71745 -10.63397 -10.18731 -9.29137 -8.13320 -6.39846 0.82725 1.26486 1.41746 1.43922 1.55688 1.85803 2.40031 2.50092 2.90544 3.13117 3.32788 3.48123 3.69225 3.74391 3.86113 3.95063 3.99141 4.02597 4.03480 4.10906 4.17684 4.21359 4.31373 4.34698 4.43255 4.49508 4.53316 4.58809 4.65091 4.67672 4.74547 4.78100 4.82030 4.83090 4.88756 4.94619 4.99716 5.05100 5.16523 5.22028 5.25777 5.28158 5.36827 5.55690 5.62350 5.70386 5.79485 6.03053 6.25786 6.71823 6.93375 7.32351 7.51041 7.82047 8.91691 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.002646 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.805123 B =10579.081596 C =11457.576066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.462 5.462 4 C 0.205 3.795 5 C -0.045 4.045 6 C 0.244 3.756 7 H 0.008 0.992 8 O -0.574 6.574 9 C -0.579 4.579 10 H 0.071 0.929 11 C 0.024 3.976 12 N -0.902 5.902 13 Si 0.963 3.037 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.285 1.285 17 N -0.342 5.342 18 N -0.348 5.348 19 C 0.345 3.655 20 N -0.422 5.422 21 C 0.059 3.941 22 C -0.095 4.095 23 C -0.117 4.117 24 C 0.076 3.924 25 O -0.601 6.601 26 C 0.013 3.987 27 C -0.124 4.124 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.355 0.645 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.398 0.602 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.130 0.870 50 H 0.102 0.898 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 -5.150 -24.360 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.155 5.155 4 C -0.064 4.064 5 C -0.085 4.085 6 C 0.186 3.814 7 H 0.026 0.974 8 O -0.379 6.379 9 C -0.617 4.617 10 H 0.089 0.911 11 C -0.179 4.179 12 N -0.539 5.539 13 Si 0.788 3.212 14 H -0.181 1.181 15 H -0.204 1.204 16 H -0.211 1.211 17 N -0.181 5.181 18 N -0.192 5.192 19 C -0.012 4.012 20 N -0.146 5.146 21 C -0.067 4.067 22 C -0.133 4.133 23 C -0.155 4.155 24 C -0.001 4.001 25 O -0.410 6.410 26 C -0.094 4.094 27 C -0.161 4.161 28 C -0.213 4.213 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.247 0.753 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.148 0.852 50 H 0.120 0.880 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.085 -3.651 -23.883 26.181 hybrid contribution -0.598 -0.854 1.041 1.473 sum -10.683 -4.504 -22.842 25.616 Atomic orbital electron populations 1.22227 0.92105 1.04894 1.02781 1.22191 0.96777 0.77469 1.05999 1.46332 1.49614 1.14314 1.05275 1.25041 1.01180 0.87507 0.92637 1.20870 1.00627 1.03142 0.83860 1.19068 0.89342 0.82816 0.90192 0.97383 1.86624 1.44611 1.23910 1.82715 1.22006 0.97744 1.47534 0.94407 0.91055 1.25950 0.94536 0.94047 1.03320 1.70254 1.02883 1.44031 1.36736 0.85455 0.78851 0.77644 0.79279 1.18096 1.20417 1.21146 1.73878 1.18967 1.21291 1.03975 1.74429 1.24225 1.16755 1.03772 1.22692 1.01257 0.88012 0.89228 1.58647 1.12493 1.48995 0.94475 1.22454 0.85907 1.00552 0.97771 1.21328 0.96653 1.02383 0.92963 1.21415 0.96814 1.01407 0.95892 1.22191 0.83705 1.00141 0.94102 1.86420 1.30255 1.85719 1.38569 1.22318 0.88292 0.97708 1.01114 1.23273 0.97205 0.99794 0.95867 1.22822 0.97274 1.02449 0.98788 0.92081 0.92351 0.87214 0.87157 0.88461 0.88954 0.88076 0.79999 0.93107 0.89793 0.94455 0.90138 0.89796 0.91584 0.92200 0.92465 0.92286 0.75259 0.87454 0.87911 0.85219 0.87988 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.01 71.98 0.72 -2.15 16 2 C 0.10 2.32 6.08 86.38 0.53 2.85 16 3 N -0.46 -15.40 2.81 -514.86 -1.45 -16.85 16 4 C 0.21 8.39 7.10 137.64 0.98 9.37 16 5 C -0.04 -1.81 5.19 29.85 0.16 -1.66 16 6 C 0.24 12.46 2.81 29.85 0.08 12.54 16 7 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 8 O -0.57 -28.59 12.02 -148.98 -1.79 -30.38 16 9 C -0.58 -30.82 8.78 25.60 0.22 -30.60 16 10 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 11 C 0.02 1.31 5.40 84.66 0.46 1.77 16 12 N -0.90 -54.30 12.84 21.45 0.28 -54.03 16 13 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 17 N -0.34 -15.81 12.18 -49.54 -0.60 -16.42 16 18 N -0.35 -14.55 10.92 -58.01 -0.63 -15.18 16 19 C 0.35 11.78 6.38 260.11 1.66 13.44 16 20 N -0.42 -10.57 4.63 -682.09 -3.16 -13.72 16 21 C 0.06 1.13 4.87 86.30 0.42 1.55 16 22 C -0.10 -1.19 5.17 30.59 0.16 -1.03 16 23 C -0.12 -1.46 5.58 30.59 0.17 -1.29 16 24 C 0.08 0.77 7.05 71.98 0.51 1.27 16 25 O -0.60 -7.73 13.66 -148.98 -2.03 -9.77 16 26 C 0.01 0.31 3.65 44.91 0.16 0.47 16 27 C -0.12 -2.15 10.39 30.59 0.32 -1.83 16 28 C -0.18 -4.66 9.32 30.59 0.29 -4.38 16 29 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 30 H 0.06 1.05 6.04 -2.39 -0.01 1.04 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.11 2.29 8.06 -2.39 -0.02 2.27 16 33 H 0.10 2.46 6.27 -2.38 -0.01 2.45 16 34 H 0.09 3.74 8.14 -2.38 -0.02 3.72 16 35 H 0.10 3.38 7.33 -2.39 -0.02 3.36 16 36 H 0.35 14.56 7.75 -74.06 -0.57 13.98 16 37 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.08 1.55 5.21 -2.39 -0.01 1.54 16 39 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 40 H 0.08 0.91 7.23 -2.39 -0.02 0.89 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 46 H 0.40 1.44 9.12 -74.06 -0.68 0.77 16 47 H 0.11 2.34 8.07 -2.39 -0.02 2.32 16 48 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 51 H 0.06 1.96 7.98 -2.39 -0.02 1.94 16 Total: -1.00 -78.97 412.12 -0.85 -79.82 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.31 Total: 31.44 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.83 Total: 0.34 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -5.57 Total: -116.20 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -3.83 Total: -40.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -78.97 -0.85 -79.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356502275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.895 kcal (2) G-P(sol) polarization free energy of solvation -78.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds