Wall clock time and date at job start Tue Mar 31 2020 21:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46841 * 2 1 4 4 C 1.42899 * 113.99902 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47327 * 180.02562 * 4 3 2 6 6 N 1.30298 * 126.34400 * 270.03627 * 5 4 3 7 7 N 1.28527 * 110.05050 * 179.69074 * 6 5 4 8 8 C 1.31219 * 109.86415 * 0.45470 * 7 6 5 9 9 N 1.38570 * 126.47407 * 179.82219 * 8 7 6 10 10 C 1.46905 * 110.99978 * 104.38850 * 9 8 7 11 11 C 1.46896 * 111.00389 * 340.43438 * 9 8 7 12 12 H 1.09004 * 109.46990 * 59.99658 * 11 9 8 13 13 C 1.53003 * 109.47209 * 300.00443 * 11 9 8 14 14 C 1.50694 * 109.47497 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00233 * 4.77416 * 14 11 9 16 16 C 1.37880 * 120.00232 * 184.76951 * 14 11 9 17 17 N 1.31523 * 119.99792 * 7.78154 * 16 14 11 18 18 Si 1.86796 * 120.00382 * 187.77789 * 16 14 11 19 19 H 1.48509 * 109.46997 * 84.99499 * 18 16 14 20 20 H 1.48496 * 109.47375 * 204.99289 * 18 16 14 21 21 H 1.48502 * 109.47181 * 324.99890 * 18 16 14 22 22 N 1.36457 * 107.05107 * 359.55693 * 8 7 6 23 23 C 1.46495 * 127.13551 * 180.24144 * 22 8 7 24 24 C 1.53006 * 109.47152 * 271.03532 * 23 22 8 25 25 C 1.53000 * 112.99840 * 47.35365 * 24 23 22 26 26 C 1.54040 * 113.81367 * 275.36832 * 24 23 22 27 27 O 1.44181 * 85.51464 * 223.19349 * 26 24 23 28 28 C 1.44175 * 93.34064 * 24.19351 * 27 26 24 29 29 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46956 * 300.00108 * 1 2 3 31 31 H 1.09001 * 109.47361 * 60.00334 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99892 * 2 1 3 33 33 H 1.08993 * 109.46631 * 120.00043 * 2 1 3 34 34 H 1.08990 * 109.47549 * 59.99187 * 4 3 2 35 35 H 1.09001 * 109.46659 * 299.99676 * 4 3 2 36 36 H 1.08996 * 109.47154 * 295.04786 * 10 9 8 37 37 H 1.08996 * 109.46998 * 55.05141 * 10 9 8 38 38 H 1.09005 * 109.46777 * 175.04836 * 10 9 8 39 39 H 1.09000 * 109.46879 * 305.54038 * 13 11 9 40 40 H 1.09001 * 109.47221 * 65.53056 * 13 11 9 41 41 H 1.08996 * 109.47257 * 185.53823 * 13 11 9 42 42 H 0.96998 * 120.00045 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47310 * 31.03433 * 23 22 8 44 44 H 1.09000 * 109.47147 * 151.03772 * 23 22 8 45 45 H 1.08999 * 109.47399 * 60.00146 * 25 24 23 46 46 H 1.08994 * 109.46914 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47027 * 299.99654 * 25 24 23 48 48 H 1.08992 * 113.86534 * 337.34106 * 26 24 23 49 49 H 1.09005 * 113.86385 * 109.04975 * 26 24 23 50 50 H 1.08998 * 113.86642 * 221.65664 * 28 27 26 51 51 H 1.09008 * 113.86347 * 89.95346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 7 4.0174 3.6630 -1.0491 7 7 4.3296 4.8564 -0.6879 8 6 4.3572 4.9330 0.6218 9 7 4.6571 6.0568 1.3750 10 6 3.4407 6.6422 1.9545 11 6 5.3883 7.0477 0.5741 12 1 4.7771 7.3499 -0.2763 13 6 6.6950 6.4320 0.0698 14 6 5.6968 8.2525 1.4251 15 1 5.4503 8.2485 2.4765 16 6 6.2940 9.3600 0.8613 17 7 6.4552 9.4282 -0.4422 18 14 6.8740 10.7637 1.9488 19 1 8.2366 10.4648 2.4582 20 1 6.9055 12.0211 1.1593 21 1 5.9411 10.9211 3.0935 22 7 4.0288 3.6986 1.1018 23 6 3.9231 3.2952 2.5062 24 6 5.2864 2.8075 3.0007 25 6 6.4306 3.7522 2.6277 26 6 5.5699 1.3270 2.6834 27 8 6.0799 1.2534 4.0300 28 6 5.2935 2.3753 4.4792 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8333 0.9767 -0.8906 35 1 3.8339 0.9765 0.8892 36 1 2.7978 7.0096 1.1547 37 1 2.9095 5.8826 2.5278 38 1 3.7126 7.4689 2.6109 39 1 7.2621 6.0408 0.9145 40 1 6.4709 5.6215 -0.6237 41 1 7.2829 7.1948 -0.4406 42 1 6.8750 10.2075 -0.8389 43 1 3.6026 4.1472 3.1058 44 1 3.1937 2.4905 2.5991 45 1 6.2502 4.7329 3.0679 46 1 7.3708 3.3512 3.0060 47 1 6.4859 3.8454 1.5431 48 1 4.6720 0.7316 2.5188 49 1 6.3291 1.1782 1.9156 50 1 5.8334 3.0577 5.1355 51 1 4.3111 2.0997 4.8628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401521235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:07 Heat of formation + Delta-G solvation = 43.322615 kcal Electronic energy + Delta-G solvation = -31999.843112 eV Core-core repulsion = 27938.363692 eV Total energy + Delta-G solvation = -4061.479419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68323 -40.78788 -38.26981 -37.09812 -35.27830 -32.92261 -32.16376 -31.56492 -29.99210 -29.34005 -27.53358 -26.98319 -26.62983 -25.38217 -25.11364 -24.30309 -23.06572 -21.91827 -20.73427 -19.64033 -18.94550 -17.24317 -17.17508 -16.43864 -16.33972 -16.18978 -16.15423 -15.85562 -15.51489 -14.99884 -14.97437 -14.54099 -13.85167 -13.66749 -13.62305 -13.41415 -13.06382 -12.86171 -12.59474 -12.51729 -12.27950 -12.11744 -11.96763 -11.74180 -11.70536 -11.47559 -11.38802 -11.11633 -10.98539 -10.88025 -10.75145 -10.63778 -10.38387 -10.31987 -10.14904 -10.04653 -9.98820 -9.78722 -9.55982 -9.23845 -8.73433 -8.46701 -7.52822 -6.08371 -4.13181 1.98294 2.51744 3.16662 3.27703 3.34731 3.35407 3.42604 3.71901 3.89984 4.30163 4.41143 4.48101 4.53955 4.62669 4.65214 4.75501 4.87550 4.93748 4.96811 5.06778 5.09492 5.14253 5.19923 5.25398 5.35220 5.40457 5.58922 5.61613 5.68120 5.73019 5.83335 5.84443 5.84810 6.00087 6.04700 6.08588 6.15336 6.31565 6.48843 6.51487 6.79085 6.88572 6.89708 7.03825 7.15156 7.41368 7.59631 7.72174 7.89091 8.12112 8.42331 8.89384 9.26727 9.50762 11.00067 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003720 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.257122 B = 7524.930954 C = 8747.076015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.159 3.841 5 C 0.144 3.856 6 N -0.264 5.264 7 N -0.314 5.314 8 C 0.395 3.605 9 N -0.459 5.459 10 C 0.043 3.957 11 C 0.229 3.771 12 H 0.031 0.969 13 C -0.129 4.129 14 C -0.518 4.518 15 H 0.064 0.936 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.470 5.470 23 C 0.120 3.880 24 C -0.139 4.139 25 C -0.124 4.124 26 C 0.038 3.962 27 O -0.374 6.374 28 C 0.049 3.951 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.263 0.737 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 -18.924 7.784 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.301 6.301 4 C 0.081 3.919 5 C -0.123 4.123 6 N -0.106 5.106 7 N -0.159 5.159 8 C 0.040 3.960 9 N -0.184 5.184 10 C -0.104 4.104 11 C 0.124 3.876 12 H 0.049 0.951 13 C -0.188 4.188 14 C -0.557 4.557 15 H 0.082 0.918 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.200 1.200 22 N -0.166 5.166 23 C -0.004 4.004 24 C -0.140 4.140 25 C -0.182 4.182 26 C -0.038 4.038 27 O -0.293 6.293 28 C -0.029 4.029 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.094 -18.513 6.711 20.931 hybrid contribution -0.119 0.537 1.252 1.367 sum -7.212 -17.976 7.963 20.942 Atomic orbital electron populations 1.21739 0.93546 1.02201 1.03362 1.22493 0.95809 0.83407 1.00249 1.88007 1.19949 1.26701 1.95446 1.20402 0.82211 0.87352 1.01979 1.23809 1.09186 0.96022 0.83259 1.73961 1.14170 0.98290 1.24166 1.74881 1.21988 1.11104 1.07885 1.23069 0.97061 0.86778 0.89117 1.59225 1.20471 1.05318 1.33413 1.22288 0.89452 0.99281 0.99391 1.19345 0.90533 0.86147 0.91526 0.95139 1.21777 0.99024 0.99455 0.98503 1.20988 1.41151 0.98036 0.95502 0.91769 1.24900 0.95852 0.98068 0.94884 1.69987 1.42628 1.29841 1.09414 0.86553 0.79346 0.81364 0.80346 1.20535 1.21324 1.19962 1.46110 1.53922 1.09181 1.07399 1.21915 0.97136 1.02108 0.79192 1.24119 0.96900 0.96631 0.96331 1.21581 0.94921 0.98871 1.02779 1.24213 0.99027 0.94114 0.86473 1.89690 1.62015 1.53245 1.24328 1.24035 0.96194 0.87522 0.95116 0.91025 0.91914 0.91621 0.92934 0.93363 0.89828 0.91945 0.94878 0.93868 0.88613 0.95235 0.95527 0.90789 0.92697 0.87888 0.89070 0.89686 0.92213 0.91723 0.90433 0.88943 0.88352 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.66 10.33 -35.23 -0.36 -5.02 16 4 C 0.16 1.86 6.13 36.00 0.22 2.08 16 5 C 0.14 2.35 7.70 -154.01 -1.19 1.16 16 6 N -0.26 -5.41 12.18 32.99 0.40 -5.00 16 7 N -0.31 -7.11 9.94 30.31 0.30 -6.81 16 8 C 0.39 7.83 4.54 -318.88 -1.45 6.38 16 9 N -0.46 -9.34 4.08 -176.08 -0.72 -10.06 16 10 C 0.04 0.79 9.07 60.07 0.55 1.33 16 11 C 0.23 5.65 1.60 -68.87 -0.11 5.54 16 12 H 0.03 0.88 7.89 -51.93 -0.41 0.47 16 13 C -0.13 -3.19 8.81 37.16 0.33 -2.86 16 14 C -0.52 -13.39 7.76 -34.44 -0.27 -13.66 16 15 H 0.06 1.60 6.61 -52.49 -0.35 1.25 16 16 C 0.07 1.77 5.18 -17.82 -0.09 1.68 16 17 N -0.88 -24.96 12.03 55.43 0.67 -24.29 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 N -0.47 -7.42 2.32 -114.09 -0.27 -7.69 16 23 C 0.12 1.40 5.43 -4.04 -0.02 1.37 16 24 C -0.14 -1.54 1.23 -153.42 -0.19 -1.73 16 25 C -0.12 -1.76 8.07 37.16 0.30 -1.46 16 26 C 0.04 0.39 7.60 37.61 0.29 0.68 16 27 O -0.37 -4.41 12.37 -35.23 -0.44 -4.85 16 28 C 0.05 0.46 8.36 37.61 0.31 0.77 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.56 5.28 -51.93 -0.27 0.29 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.64 6.47 -51.93 -0.34 0.30 16 38 H 0.10 1.75 6.36 -51.93 -0.33 1.42 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.65 6.34 -51.93 -0.33 0.32 16 41 H 0.07 2.00 6.66 -51.93 -0.35 1.65 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.10 1.17 6.42 -51.93 -0.33 0.84 16 44 H 0.09 0.86 7.59 -51.93 -0.39 0.46 16 45 H 0.08 1.32 7.85 -51.93 -0.41 0.92 16 46 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 47 H 0.06 1.10 6.78 -51.93 -0.35 0.75 16 48 H 0.08 0.63 6.30 -51.93 -0.33 0.30 16 49 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 50 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 51 H 0.08 0.58 8.10 -51.92 -0.42 0.16 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -32.16 398.92 -8.50 -40.66 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.39 Total: 0.24 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.69 Total: 1.26 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.39 Total: -53.86 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.80 Total: -9.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.16 -8.50 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401521235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.986 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds