Wall clock time and date at job start Tue Mar 31 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46841 * 2 1 4 4 C 1.42899 * 113.99902 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47327 * 180.02562 * 4 3 2 6 6 N 1.30298 * 126.34400 * 270.03627 * 5 4 3 7 7 N 1.28527 * 110.05050 * 179.69074 * 6 5 4 8 8 C 1.31219 * 109.86415 * 0.45470 * 7 6 5 9 9 N 1.38570 * 126.47407 * 179.82219 * 8 7 6 10 10 C 1.46905 * 110.99978 * 104.38850 * 9 8 7 11 11 C 1.46896 * 111.00389 * 340.43438 * 9 8 7 12 12 H 1.09004 * 109.46990 * 59.99658 * 11 9 8 13 13 C 1.53003 * 109.47209 * 300.00443 * 11 9 8 14 14 C 1.50694 * 109.47497 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00233 * 4.77416 * 14 11 9 16 16 C 1.37880 * 120.00232 * 184.76951 * 14 11 9 17 17 N 1.31523 * 119.99792 * 7.78154 * 16 14 11 18 18 Si 1.86796 * 120.00382 * 187.77789 * 16 14 11 19 19 H 1.48509 * 109.46997 * 84.99499 * 18 16 14 20 20 H 1.48496 * 109.47375 * 204.99289 * 18 16 14 21 21 H 1.48502 * 109.47181 * 324.99890 * 18 16 14 22 22 N 1.36457 * 107.05107 * 359.55693 * 8 7 6 23 23 C 1.46495 * 127.13551 * 180.24144 * 22 8 7 24 24 C 1.53006 * 109.47152 * 271.03532 * 23 22 8 25 25 C 1.53000 * 112.99840 * 47.35365 * 24 23 22 26 26 C 1.54040 * 113.81367 * 275.36832 * 24 23 22 27 27 O 1.44181 * 85.51464 * 223.19349 * 26 24 23 28 28 C 1.44175 * 93.34064 * 24.19351 * 27 26 24 29 29 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46956 * 300.00108 * 1 2 3 31 31 H 1.09001 * 109.47361 * 60.00334 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99892 * 2 1 3 33 33 H 1.08993 * 109.46631 * 120.00043 * 2 1 3 34 34 H 1.08990 * 109.47549 * 59.99187 * 4 3 2 35 35 H 1.09001 * 109.46659 * 299.99676 * 4 3 2 36 36 H 1.08996 * 109.47154 * 295.04786 * 10 9 8 37 37 H 1.08996 * 109.46998 * 55.05141 * 10 9 8 38 38 H 1.09005 * 109.46777 * 175.04836 * 10 9 8 39 39 H 1.09000 * 109.46879 * 305.54038 * 13 11 9 40 40 H 1.09001 * 109.47221 * 65.53056 * 13 11 9 41 41 H 1.08996 * 109.47257 * 185.53823 * 13 11 9 42 42 H 0.96998 * 120.00045 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47310 * 31.03433 * 23 22 8 44 44 H 1.09000 * 109.47147 * 151.03772 * 23 22 8 45 45 H 1.08999 * 109.47399 * 60.00146 * 25 24 23 46 46 H 1.08994 * 109.46914 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47027 * 299.99654 * 25 24 23 48 48 H 1.08992 * 113.86534 * 337.34106 * 26 24 23 49 49 H 1.09005 * 113.86385 * 109.04975 * 26 24 23 50 50 H 1.08998 * 113.86642 * 221.65664 * 28 27 26 51 51 H 1.09008 * 113.86347 * 89.95346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 7 4.0174 3.6630 -1.0491 7 7 4.3296 4.8564 -0.6879 8 6 4.3572 4.9330 0.6218 9 7 4.6571 6.0568 1.3750 10 6 3.4407 6.6422 1.9545 11 6 5.3883 7.0477 0.5741 12 1 4.7771 7.3499 -0.2763 13 6 6.6950 6.4320 0.0698 14 6 5.6968 8.2525 1.4251 15 1 5.4503 8.2485 2.4765 16 6 6.2940 9.3600 0.8613 17 7 6.4552 9.4282 -0.4422 18 14 6.8740 10.7637 1.9488 19 1 8.2366 10.4648 2.4582 20 1 6.9055 12.0211 1.1593 21 1 5.9411 10.9211 3.0935 22 7 4.0288 3.6986 1.1018 23 6 3.9231 3.2952 2.5062 24 6 5.2864 2.8075 3.0007 25 6 6.4306 3.7522 2.6277 26 6 5.5699 1.3270 2.6834 27 8 6.0799 1.2534 4.0300 28 6 5.2935 2.3753 4.4792 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8333 0.9767 -0.8906 35 1 3.8339 0.9765 0.8892 36 1 2.7978 7.0096 1.1547 37 1 2.9095 5.8826 2.5278 38 1 3.7126 7.4689 2.6109 39 1 7.2621 6.0408 0.9145 40 1 6.4709 5.6215 -0.6237 41 1 7.2829 7.1948 -0.4406 42 1 6.8750 10.2075 -0.8389 43 1 3.6026 4.1472 3.1058 44 1 3.1937 2.4905 2.5991 45 1 6.2502 4.7329 3.0679 46 1 7.3708 3.3512 3.0060 47 1 6.4859 3.8454 1.5431 48 1 4.6720 0.7316 2.5188 49 1 6.3291 1.1782 1.9156 50 1 5.8334 3.0577 5.1355 51 1 4.3111 2.0997 4.8628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401521235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:06 Heat of formation + Delta-G solvation = 22.398283 kcal Electronic energy + Delta-G solvation = -32000.750459 eV Core-core repulsion = 27938.363692 eV Total energy + Delta-G solvation = -4062.386767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.07017 -41.64338 -39.19400 -38.70362 -36.46756 -34.84356 -33.08318 -32.62815 -31.37125 -31.01946 -28.71529 -28.05068 -27.56683 -26.98124 -26.27927 -25.91705 -23.66603 -23.63581 -21.98417 -21.24832 -19.89229 -18.58616 -18.21300 -17.99690 -17.41705 -17.25787 -16.95984 -16.88811 -16.77446 -16.29586 -16.23348 -16.10766 -15.34575 -14.99643 -14.71148 -14.46400 -14.21391 -14.02138 -13.86423 -13.59469 -13.46943 -13.24064 -13.11274 -12.99792 -12.83787 -12.75985 -12.69236 -12.46685 -12.37162 -12.23025 -12.19038 -12.12952 -12.08537 -12.00928 -11.62630 -11.48883 -11.07727 -10.90907 -10.65833 -10.60931 -10.55254 -10.35995 -9.20088 -8.14197 -6.25948 0.68910 1.24918 1.45529 1.47188 1.56082 1.76458 2.42040 2.64283 2.74644 2.94014 3.12791 3.18774 3.45408 3.56127 3.66106 3.75900 4.01711 4.05976 4.07209 4.22431 4.23093 4.34346 4.37493 4.41971 4.52136 4.55136 4.56768 4.58747 4.75176 4.80308 4.80830 4.81871 4.86349 4.87574 4.94075 4.99520 5.03079 5.06238 5.07111 5.14144 5.16116 5.30173 5.33467 5.43050 5.51938 5.65704 5.85555 5.96718 6.12625 6.15093 6.60256 6.85346 7.42273 7.81184 8.95105 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003720 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.257122 B = 7524.930954 C = 8747.076015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.162 3.838 5 C 0.168 3.832 6 N -0.313 5.313 7 N -0.368 5.368 8 C 0.382 3.618 9 N -0.448 5.448 10 C 0.044 3.956 11 C 0.243 3.757 12 H -0.022 1.022 13 C -0.109 4.109 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.964 3.036 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.259 1.259 22 N -0.458 5.458 23 C 0.113 3.887 24 C -0.141 4.141 25 C -0.115 4.115 26 C 0.042 3.958 27 O -0.396 6.396 28 C 0.059 3.941 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.010 0.990 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.018 0.982 41 H 0.045 0.955 42 H 0.262 0.738 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 -21.555 11.062 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.084 3.916 5 C -0.101 4.101 6 N -0.154 5.154 7 N -0.212 5.212 8 C 0.025 3.975 9 N -0.173 5.173 10 C -0.103 4.103 11 C 0.137 3.863 12 H -0.004 1.004 13 C -0.168 4.168 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.183 1.183 22 N -0.153 5.153 23 C -0.009 4.009 24 C -0.143 4.143 25 C -0.173 4.173 26 C -0.034 4.034 27 O -0.315 6.315 28 C -0.018 4.018 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.028 0.972 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.127 0.873 49 H 0.102 0.898 50 H 0.118 0.882 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.307 -21.179 10.020 24.859 hybrid contribution 0.179 1.201 0.215 1.233 sum -8.128 -19.978 10.235 23.874 Atomic orbital electron populations 1.21781 0.93230 1.03488 1.02369 1.22780 0.96071 0.81712 1.02030 1.87965 1.19589 1.29403 1.95762 1.20608 0.82761 0.84038 1.04236 1.24752 1.05606 0.97360 0.82339 1.73853 1.16907 0.98315 1.26324 1.74736 1.23625 1.12891 1.09948 1.22869 0.98155 0.87750 0.88729 1.59138 1.21289 1.04618 1.32254 1.22358 0.88605 1.00547 0.98778 1.18904 0.89905 0.87233 0.90280 1.00389 1.21525 0.98929 0.98095 0.98214 1.21306 1.40527 0.98306 0.95992 0.90597 1.25774 0.95946 1.00850 0.95971 1.70150 1.43751 1.30645 1.11429 0.85475 0.79052 0.77786 0.78748 1.20082 1.21658 1.18306 1.46247 1.52504 1.07446 1.09092 1.22359 0.98367 1.03615 0.76552 1.24069 0.95149 0.96631 0.98411 1.21401 0.96695 0.99063 1.00121 1.24335 0.99944 0.93238 0.85869 1.89685 1.63007 1.53900 1.24953 1.24200 0.97591 0.86563 0.93403 0.88602 0.92280 0.93260 0.92013 0.90642 0.88822 0.88385 0.97155 0.89860 0.88650 0.94372 0.96265 0.93644 0.92904 0.87289 0.85398 0.91396 0.92102 0.95249 0.87279 0.89820 0.88177 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.63 6.66 71.98 0.48 1.11 16 3 O -0.41 -8.70 10.33 -148.98 -1.54 -10.23 16 4 C 0.16 3.29 6.13 71.24 0.44 3.73 16 5 C 0.17 5.32 7.70 137.64 1.06 6.38 16 6 N -0.31 -13.22 12.18 -49.54 -0.60 -13.82 16 7 N -0.37 -17.55 9.94 -58.01 -0.58 -18.12 16 8 C 0.38 15.49 4.54 260.11 1.18 16.67 16 9 N -0.45 -18.67 4.08 -711.00 -2.90 -21.57 16 10 C 0.04 1.60 9.07 127.69 1.16 2.76 16 11 C 0.24 12.60 1.60 44.17 0.07 12.67 16 12 H -0.02 -1.34 7.89 -2.38 -0.02 -1.36 16 13 C -0.11 -5.72 8.81 71.98 0.63 -5.08 16 14 C -0.52 -27.64 7.76 25.60 0.20 -27.44 16 15 H 0.08 3.76 6.61 -2.91 -0.02 3.74 16 16 C 0.01 0.78 5.18 84.65 0.44 1.21 16 17 N -0.92 -54.47 12.03 21.45 0.26 -54.21 16 18 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 N -0.46 -13.89 2.32 -514.86 -1.20 -15.09 16 23 C 0.11 2.22 5.43 86.38 0.47 2.69 16 24 C -0.14 -2.73 1.23 -51.48 -0.06 -2.80 16 25 C -0.12 -3.20 8.07 71.98 0.58 -2.62 16 26 C 0.04 0.71 7.60 72.28 0.55 1.26 16 27 O -0.40 -7.92 12.37 -148.98 -1.84 -9.76 16 28 C 0.06 0.87 8.36 72.27 0.60 1.48 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.26 5.28 -2.39 -0.01 1.25 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.08 2.31 6.47 -2.39 -0.02 2.30 16 38 H 0.09 3.44 6.36 -2.38 -0.02 3.43 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.02 0.99 6.34 -2.39 -0.02 0.97 16 41 H 0.04 2.60 6.66 -2.39 -0.02 2.58 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.11 2.07 6.42 -2.39 -0.02 2.05 16 44 H 0.13 1.66 7.59 -2.39 -0.02 1.65 16 45 H 0.07 2.09 7.85 -2.39 -0.02 2.07 16 46 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 47 H 0.03 1.01 6.78 -2.38 -0.02 0.99 16 48 H 0.11 1.12 6.30 -2.39 -0.02 1.10 16 49 H 0.08 1.55 8.10 -2.38 -0.02 1.53 16 50 H 0.10 1.45 8.10 -2.39 -0.02 1.43 16 51 H 0.12 0.97 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -76.24 398.92 3.08 -73.15 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.92 Total: 14.10 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 8.54 Total: 10.95 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.02 Total: -122.82 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -3.38 Total: -20.00 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.24 3.08 -73.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401521235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.550 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds