Wall clock time and date at job start Tue Mar 31 2020 21:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47103 * 2 1 4 4 C 1.42902 * 113.99892 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46823 * 180.02562 * 4 3 2 6 6 N 1.30301 * 126.34905 * 270.15259 * 5 4 3 7 7 N 1.28526 * 110.05353 * 180.31268 * 6 5 4 8 8 C 1.31213 * 109.86222 * 359.72353 * 7 6 5 9 9 N 1.38579 * 126.47353 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00244 * 110.48808 * 9 8 7 11 11 C 1.46904 * 110.99974 * 346.52825 * 9 8 7 12 12 H 1.08995 * 109.47520 * 310.00452 * 11 9 8 13 13 C 1.53002 * 109.46628 * 70.00620 * 11 9 8 14 14 C 1.50700 * 109.47060 * 190.00188 * 11 9 8 15 15 H 1.07998 * 120.00306 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99689 * 180.02562 * 14 11 9 17 17 N 1.31518 * 120.00379 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99820 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47494 * 89.99862 * 18 16 14 20 20 H 1.48500 * 109.47309 * 209.99709 * 18 16 14 21 21 H 1.48493 * 109.47170 * 329.99509 * 18 16 14 22 22 N 1.36457 * 107.05473 * 359.97438 * 8 7 6 23 23 C 1.46496 * 127.13801 * 180.02562 * 22 8 7 24 24 C 1.52997 * 109.47354 * 266.98330 * 23 22 8 25 25 C 1.52995 * 113.56628 * 40.08428 * 24 23 22 26 26 C 1.53370 * 114.56907 * 174.35926 * 24 23 22 27 27 O 1.43344 * 88.44696 * 139.57669 * 26 24 23 28 28 C 1.43347 * 88.32354 * 331.84850 * 27 26 24 29 29 H 1.09006 * 109.47456 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47321 * 299.99444 * 1 2 3 32 32 H 1.09003 * 109.46924 * 240.00486 * 2 1 3 33 33 H 1.09001 * 109.47267 * 120.00544 * 2 1 3 34 34 H 1.09000 * 109.47217 * 60.00818 * 4 3 2 35 35 H 1.09000 * 109.47540 * 300.00211 * 4 3 2 36 36 H 1.09002 * 109.47007 * 64.85513 * 10 9 8 37 37 H 1.09005 * 109.46975 * 184.85344 * 10 9 8 38 38 H 1.09001 * 109.46859 * 304.85078 * 10 9 8 39 39 H 1.09000 * 109.46883 * 299.99545 * 13 11 9 40 40 H 1.08995 * 109.47307 * 59.99701 * 13 11 9 41 41 H 1.08998 * 109.46925 * 180.02562 * 13 11 9 42 42 H 0.96995 * 119.99806 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47156 * 146.98353 * 23 22 8 44 44 H 1.08999 * 109.47285 * 26.98481 * 23 22 8 45 45 H 1.09004 * 109.47174 * 184.60989 * 25 24 23 46 46 H 1.09008 * 109.47018 * 304.60759 * 25 24 23 47 47 H 1.08996 * 109.47278 * 64.60528 * 25 24 23 48 48 H 1.09001 * 113.38566 * 24.68054 * 26 24 23 49 49 H 1.08993 * 113.43035 * 254.48720 * 26 24 23 50 50 H 1.09005 * 113.38992 * 143.04922 * 28 27 26 51 51 H 1.08994 * 113.39504 * 273.24876 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8193 2.9162 0.0012 6 7 4.0162 3.6634 -1.0480 7 7 4.3414 4.8532 -0.6869 8 6 4.3640 4.9312 0.6227 9 7 4.6705 6.0532 1.3760 10 6 3.4793 6.5655 2.0664 11 6 5.2848 7.0953 0.5424 12 1 6.0987 6.6625 -0.0392 13 6 4.2332 7.6758 -0.4054 14 6 5.8252 8.1908 1.4248 15 1 5.7229 8.1200 2.4976 16 6 6.4500 9.2836 0.8625 17 7 6.5750 9.3698 -0.4439 18 14 7.1205 10.6414 1.9564 19 1 8.5277 10.3355 2.3190 20 1 7.0668 11.9350 1.2291 21 1 6.3001 10.7331 3.1907 22 7 4.0274 3.6990 1.1028 23 6 3.9182 3.2966 2.5072 24 6 5.2505 2.7065 2.9738 25 6 6.4722 3.4582 2.4417 26 6 5.3102 2.3701 4.4689 27 8 6.0179 1.1703 4.1309 28 6 5.3443 1.1795 2.8656 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8340 0.9766 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.1356 5.8290 2.7928 37 1 3.7284 7.4939 2.5803 38 1 2.6902 6.7535 1.3383 39 1 3.8424 6.8833 -1.0436 40 1 3.4193 8.1085 0.1762 41 1 4.6891 8.4486 -1.0242 42 1 7.0150 10.1384 -0.8393 43 1 3.1331 2.5476 2.6105 44 1 3.6729 4.1665 3.1164 45 1 7.3801 2.9369 2.7452 46 1 6.4256 3.5032 1.3535 47 1 6.4813 4.4699 2.8471 48 1 4.3308 2.1851 4.9102 49 1 5.9059 3.0753 5.0484 50 1 5.9703 0.8419 2.0396 51 1 4.3740 0.6836 2.8882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401521246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:11 Heat of formation + Delta-G solvation = 49.942258 kcal Electronic energy + Delta-G solvation = -31890.733157 eV Core-core repulsion = 27829.540786 eV Total energy + Delta-G solvation = -4061.192370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70084 -41.16518 -38.27056 -37.29647 -35.38845 -32.90752 -32.17449 -31.63544 -30.03607 -28.68925 -27.64113 -26.93269 -26.48367 -25.54810 -25.24483 -24.80758 -23.06234 -21.76493 -20.73026 -19.57320 -19.03933 -17.23290 -17.10702 -16.44663 -16.33242 -16.24274 -16.14158 -15.98480 -15.48391 -15.08242 -14.96863 -14.57794 -14.00222 -13.72504 -13.52550 -13.22185 -13.11176 -12.89833 -12.62457 -12.49002 -12.45595 -12.06891 -11.90101 -11.72483 -11.53192 -11.49820 -11.42462 -11.36646 -11.10163 -10.92639 -10.78552 -10.59877 -10.43610 -10.22963 -10.09683 -10.06000 -9.94064 -9.76991 -9.65044 -8.98726 -8.90176 -8.41370 -7.49709 -6.04461 -4.11785 1.99204 2.52041 3.17427 3.28199 3.35109 3.36481 3.64281 3.70138 3.79390 4.30514 4.40650 4.50116 4.55229 4.61745 4.68185 4.75857 4.84017 4.93936 4.94577 5.04527 5.07006 5.11412 5.17303 5.27027 5.31724 5.40482 5.55059 5.61018 5.61661 5.68774 5.70587 5.82606 5.84296 5.95974 5.98020 6.01384 6.14404 6.28893 6.43130 6.45824 6.76828 6.86264 6.95820 7.09836 7.23753 7.45506 7.61959 7.73632 7.95954 8.27815 8.43389 8.90039 9.28465 9.52941 11.01750 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.003730 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.137257 B = 7504.660842 C = 8941.967431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.161 3.839 5 C 0.144 3.856 6 N -0.264 5.264 7 N -0.313 5.313 8 C 0.394 3.606 9 N -0.453 5.453 10 C 0.035 3.965 11 C 0.231 3.769 12 H 0.050 0.950 13 C -0.174 4.174 14 C -0.512 4.512 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.472 5.472 23 C 0.123 3.877 24 C -0.141 4.141 25 C -0.121 4.121 26 C 0.043 3.957 27 O -0.362 6.362 28 C 0.032 3.968 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.022 0.978 41 H 0.089 0.911 42 H 0.262 0.738 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -18.674 7.645 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.301 6.301 4 C 0.082 3.918 5 C -0.123 4.123 6 N -0.106 5.106 7 N -0.157 5.157 8 C 0.039 3.961 9 N -0.177 5.177 10 C -0.112 4.112 11 C 0.126 3.874 12 H 0.068 0.932 13 C -0.233 4.233 14 C -0.551 4.551 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 N -0.168 5.168 23 C -0.001 4.001 24 C -0.142 4.142 25 C -0.178 4.178 26 C -0.035 4.035 27 O -0.280 6.280 28 C -0.045 4.045 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.994 -18.269 6.563 20.994 hybrid contribution -0.150 0.482 1.348 1.440 sum -8.145 -17.787 7.911 21.102 Atomic orbital electron populations 1.21737 0.93562 1.02194 1.03357 1.22491 0.95793 0.83435 1.00239 1.88010 1.19979 1.26670 1.95448 1.20367 0.82163 0.87366 1.01925 1.23783 1.09267 0.95997 0.83212 1.73964 1.14038 0.98396 1.24226 1.74942 1.22465 1.10828 1.07508 1.23212 0.96929 0.86611 0.89344 1.59363 1.24668 1.05019 1.28699 1.22376 0.90406 1.00963 0.97453 1.19357 0.92330 0.85920 0.89750 0.93201 1.22448 0.98411 1.01956 1.00509 1.20995 1.37617 1.03386 0.93118 0.91856 1.24887 0.95884 0.98079 0.95024 1.69920 1.42647 1.30177 1.09437 0.86496 0.79339 0.81182 0.80325 1.20676 1.21266 1.19941 1.46069 1.54193 1.09210 1.07368 1.21843 0.96834 1.02037 0.79354 1.23623 0.97345 0.96077 0.97177 1.21453 0.93951 1.00822 1.01603 1.23732 0.97518 0.86992 0.95255 1.89879 1.60479 1.45484 1.32196 1.23936 0.97552 0.94802 0.88187 0.91628 0.91037 0.91916 0.92946 0.93377 0.89870 0.92005 0.93601 0.88523 0.94739 0.94053 0.95866 0.89227 0.92766 0.88982 0.87570 0.91973 0.92013 0.89780 0.90087 0.88721 0.89404 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.15 0.38 -0.71 16 2 C 0.06 0.46 6.66 37.15 0.25 0.71 16 3 O -0.38 -4.63 10.33 -35.23 -0.36 -5.00 16 4 C 0.16 1.87 6.21 36.01 0.22 2.10 16 5 C 0.14 2.35 7.70 -154.01 -1.19 1.16 16 6 N -0.26 -5.41 12.18 32.99 0.40 -5.00 16 7 N -0.31 -7.05 9.31 30.31 0.28 -6.76 16 8 C 0.39 7.82 5.36 -318.88 -1.71 6.11 16 9 N -0.45 -9.27 4.73 -176.08 -0.83 -10.10 16 10 C 0.04 0.63 8.40 60.06 0.50 1.13 16 11 C 0.23 5.72 2.02 -68.86 -0.14 5.58 16 12 H 0.05 1.43 7.96 -51.93 -0.41 1.01 16 13 C -0.17 -4.35 8.19 37.16 0.30 -4.05 16 14 C -0.51 -13.33 7.84 -34.44 -0.27 -13.60 16 15 H 0.06 1.60 7.17 -52.49 -0.38 1.22 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 N -0.47 -7.43 2.01 -114.09 -0.23 -7.66 16 23 C 0.12 1.41 5.56 -4.05 -0.02 1.39 16 24 C -0.14 -1.54 1.46 -154.13 -0.23 -1.77 16 25 C -0.12 -1.69 8.48 37.15 0.32 -1.38 16 26 C 0.04 0.40 7.93 24.59 0.20 0.60 16 27 O -0.36 -4.21 12.56 -35.23 -0.44 -4.65 16 28 C 0.03 0.31 6.52 24.59 0.16 0.47 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.55 5.75 -51.93 -0.30 0.26 16 36 H 0.05 0.66 5.88 -51.93 -0.31 0.35 16 37 H 0.10 1.78 6.67 -51.93 -0.35 1.44 16 38 H 0.03 0.64 6.74 -51.93 -0.35 0.29 16 39 H 0.04 1.03 5.89 -51.93 -0.31 0.72 16 40 H 0.02 0.54 6.53 -51.93 -0.34 0.20 16 41 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 0.85 7.66 -51.93 -0.40 0.45 16 44 H 0.11 1.20 5.75 -51.93 -0.30 0.90 16 45 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 46 H 0.06 1.03 6.78 -51.92 -0.35 0.68 16 47 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 49 H 0.09 0.87 8.13 -51.93 -0.42 0.45 16 50 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 51 H 0.08 0.58 7.22 -51.93 -0.37 0.21 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -32.01 394.89 -9.19 -41.20 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.25 Total: 1.34 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.32 Total: -0.65 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.25 Total: -53.84 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.81 Total: -9.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.01 -9.19 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401521246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.138 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds