Wall clock time and date at job start Tue Mar 31 2020 21:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47103 * 2 1 4 4 C 1.42902 * 113.99892 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46823 * 180.02562 * 4 3 2 6 6 N 1.30301 * 126.34905 * 270.15259 * 5 4 3 7 7 N 1.28526 * 110.05353 * 180.31268 * 6 5 4 8 8 C 1.31213 * 109.86222 * 359.72353 * 7 6 5 9 9 N 1.38579 * 126.47353 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00244 * 110.48808 * 9 8 7 11 11 C 1.46904 * 110.99974 * 346.52825 * 9 8 7 12 12 H 1.08995 * 109.47520 * 310.00452 * 11 9 8 13 13 C 1.53002 * 109.46628 * 70.00620 * 11 9 8 14 14 C 1.50700 * 109.47060 * 190.00188 * 11 9 8 15 15 H 1.07998 * 120.00306 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99689 * 180.02562 * 14 11 9 17 17 N 1.31518 * 120.00379 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99820 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47494 * 89.99862 * 18 16 14 20 20 H 1.48500 * 109.47309 * 209.99709 * 18 16 14 21 21 H 1.48493 * 109.47170 * 329.99509 * 18 16 14 22 22 N 1.36457 * 107.05473 * 359.97438 * 8 7 6 23 23 C 1.46496 * 127.13801 * 180.02562 * 22 8 7 24 24 C 1.52997 * 109.47354 * 266.98330 * 23 22 8 25 25 C 1.52995 * 113.56628 * 40.08428 * 24 23 22 26 26 C 1.53370 * 114.56907 * 174.35926 * 24 23 22 27 27 O 1.43344 * 88.44696 * 139.57669 * 26 24 23 28 28 C 1.43347 * 88.32354 * 331.84850 * 27 26 24 29 29 H 1.09006 * 109.47456 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47321 * 299.99444 * 1 2 3 32 32 H 1.09003 * 109.46924 * 240.00486 * 2 1 3 33 33 H 1.09001 * 109.47267 * 120.00544 * 2 1 3 34 34 H 1.09000 * 109.47217 * 60.00818 * 4 3 2 35 35 H 1.09000 * 109.47540 * 300.00211 * 4 3 2 36 36 H 1.09002 * 109.47007 * 64.85513 * 10 9 8 37 37 H 1.09005 * 109.46975 * 184.85344 * 10 9 8 38 38 H 1.09001 * 109.46859 * 304.85078 * 10 9 8 39 39 H 1.09000 * 109.46883 * 299.99545 * 13 11 9 40 40 H 1.08995 * 109.47307 * 59.99701 * 13 11 9 41 41 H 1.08998 * 109.46925 * 180.02562 * 13 11 9 42 42 H 0.96995 * 119.99806 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47156 * 146.98353 * 23 22 8 44 44 H 1.08999 * 109.47285 * 26.98481 * 23 22 8 45 45 H 1.09004 * 109.47174 * 184.60989 * 25 24 23 46 46 H 1.09008 * 109.47018 * 304.60759 * 25 24 23 47 47 H 1.08996 * 109.47278 * 64.60528 * 25 24 23 48 48 H 1.09001 * 113.38566 * 24.68054 * 26 24 23 49 49 H 1.08993 * 113.43035 * 254.48720 * 26 24 23 50 50 H 1.09005 * 113.38992 * 143.04922 * 28 27 26 51 51 H 1.08994 * 113.39504 * 273.24876 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8193 2.9162 0.0012 6 7 4.0162 3.6634 -1.0480 7 7 4.3414 4.8532 -0.6869 8 6 4.3640 4.9312 0.6227 9 7 4.6705 6.0532 1.3760 10 6 3.4793 6.5655 2.0664 11 6 5.2848 7.0953 0.5424 12 1 6.0987 6.6625 -0.0392 13 6 4.2332 7.6758 -0.4054 14 6 5.8252 8.1908 1.4248 15 1 5.7229 8.1200 2.4976 16 6 6.4500 9.2836 0.8625 17 7 6.5750 9.3698 -0.4439 18 14 7.1205 10.6414 1.9564 19 1 8.5277 10.3355 2.3190 20 1 7.0668 11.9350 1.2291 21 1 6.3001 10.7331 3.1907 22 7 4.0274 3.6990 1.1028 23 6 3.9182 3.2966 2.5072 24 6 5.2505 2.7065 2.9738 25 6 6.4722 3.4582 2.4417 26 6 5.3102 2.3701 4.4689 27 8 6.0179 1.1703 4.1309 28 6 5.3443 1.1795 2.8656 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8340 0.9766 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 3.1356 5.8290 2.7928 37 1 3.7284 7.4939 2.5803 38 1 2.6902 6.7535 1.3383 39 1 3.8424 6.8833 -1.0436 40 1 3.4193 8.1085 0.1762 41 1 4.6891 8.4486 -1.0242 42 1 7.0150 10.1384 -0.8393 43 1 3.1331 2.5476 2.6105 44 1 3.6729 4.1665 3.1164 45 1 7.3801 2.9369 2.7452 46 1 6.4256 3.5032 1.3535 47 1 6.4813 4.4699 2.8471 48 1 4.3308 2.1851 4.9102 49 1 5.9059 3.0753 5.0484 50 1 5.9703 0.8419 2.0396 51 1 4.3740 0.6836 2.8882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401521246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:10 Heat of formation + Delta-G solvation = 29.445350 kcal Electronic energy + Delta-G solvation = -31891.621969 eV Core-core repulsion = 27829.540786 eV Total energy + Delta-G solvation = -4062.081183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.06956 -42.01192 -39.26567 -38.82580 -36.56460 -34.83042 -33.10166 -32.68291 -31.27866 -30.48778 -28.77890 -28.06242 -27.28177 -27.25793 -26.46880 -26.33159 -23.65516 -23.44366 -21.97285 -21.21588 -19.95839 -18.43527 -18.17372 -17.99754 -17.39767 -17.29270 -17.03472 -17.01767 -16.73629 -16.38319 -16.20287 -16.13996 -15.39982 -14.95339 -14.57647 -14.43896 -14.27624 -14.15499 -13.70453 -13.58543 -13.45226 -13.24029 -13.04219 -13.01546 -12.90634 -12.83849 -12.71688 -12.53431 -12.43672 -12.35802 -12.23123 -12.12932 -12.07303 -11.95778 -11.44003 -11.36848 -10.99416 -10.88275 -10.71768 -10.64045 -10.52569 -10.48607 -9.12024 -8.10305 -6.24961 0.70727 1.25882 1.46121 1.46586 1.56886 1.78282 2.42600 2.75505 2.86352 2.89726 3.09745 3.19653 3.46352 3.58138 3.65572 3.78605 3.96179 4.04574 4.10503 4.20933 4.23167 4.33116 4.37544 4.39797 4.51961 4.53697 4.54927 4.56097 4.69134 4.76164 4.76637 4.78224 4.83599 4.88422 4.97118 5.00901 5.03817 5.07084 5.07827 5.13319 5.20424 5.24439 5.30848 5.43428 5.62692 5.63390 5.85517 6.07144 6.15835 6.23522 6.60391 6.84966 7.43946 7.83360 8.96231 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.003730 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.137257 B = 7504.660842 C = 8941.967431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.164 3.836 5 C 0.168 3.832 6 N -0.314 5.314 7 N -0.365 5.365 8 C 0.380 3.620 9 N -0.449 5.449 10 C 0.036 3.964 11 C 0.245 3.755 12 H -0.001 1.001 13 C -0.156 4.156 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.012 3.988 17 N -0.920 5.920 18 Si 0.967 3.033 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.259 1.259 22 N -0.460 5.460 23 C 0.116 3.884 24 C -0.145 4.145 25 C -0.112 4.112 26 C 0.051 3.949 27 O -0.385 6.385 28 C 0.037 3.963 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.059 0.941 42 H 0.261 0.739 43 H 0.130 0.870 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -21.165 10.871 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.326 6.326 4 C 0.085 3.915 5 C -0.101 4.101 6 N -0.155 5.155 7 N -0.209 5.209 8 C 0.023 3.977 9 N -0.173 5.173 10 C -0.110 4.110 11 C 0.139 3.861 12 H 0.017 0.983 13 C -0.216 4.216 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.183 1.183 22 N -0.155 5.155 23 C -0.005 4.005 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.026 4.026 27 O -0.304 6.304 28 C -0.039 4.039 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.111 0.889 50 H 0.102 0.898 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.563 -20.795 9.819 24.906 hybrid contribution 0.294 1.091 0.329 1.177 sum -9.269 -19.704 10.148 24.024 Atomic orbital electron populations 1.21777 0.93220 1.03474 1.02383 1.22779 0.96069 0.81744 1.02017 1.87967 1.19550 1.29365 1.95760 1.20561 0.82752 0.84060 1.04124 1.24721 1.05717 0.97322 0.82315 1.73852 1.16782 0.98486 1.26381 1.74769 1.24032 1.12622 1.09506 1.23017 0.97999 0.87654 0.89010 1.59234 1.25980 1.04261 1.27776 1.22456 0.88928 1.02053 0.97592 1.18877 0.91078 0.86528 0.89599 0.98280 1.22235 0.98445 1.00749 1.00162 1.21293 1.37267 1.03542 0.93591 0.90941 1.25764 0.96192 1.00577 0.96195 1.70089 1.43610 1.30870 1.11363 0.85425 0.78661 0.77852 0.78880 1.20494 1.21406 1.18264 1.46198 1.52766 1.07467 1.09069 1.22273 0.98211 1.03370 0.76684 1.23511 0.95285 0.96908 0.98949 1.21266 0.96160 1.00293 0.99191 1.23863 0.99013 0.86106 0.93577 1.89882 1.61475 1.46124 1.32945 1.24083 0.99011 0.93273 0.87556 0.93281 0.88632 0.92229 0.92094 0.90601 0.88972 0.88462 0.89399 0.89108 0.95994 0.94647 0.94966 0.92171 0.92949 0.85219 0.87067 0.91805 0.95479 0.91965 0.86554 0.88928 0.89804 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.41 -8.62 10.33 -148.98 -1.54 -10.15 16 4 C 0.16 3.34 6.21 71.24 0.44 3.78 16 5 C 0.17 5.33 7.70 137.64 1.06 6.39 16 6 N -0.31 -13.28 12.18 -49.53 -0.60 -13.88 16 7 N -0.36 -17.34 9.31 -58.01 -0.54 -17.88 16 8 C 0.38 15.48 5.36 260.11 1.40 16.88 16 9 N -0.45 -18.80 4.73 -710.99 -3.37 -22.16 16 10 C 0.04 1.27 8.40 127.69 1.07 2.35 16 11 C 0.25 12.79 2.02 44.17 0.09 12.88 16 12 H 0.00 -0.05 7.96 -2.39 -0.02 -0.07 16 13 C -0.16 -8.27 8.19 71.98 0.59 -7.68 16 14 C -0.52 -27.62 7.84 25.60 0.20 -27.42 16 15 H 0.07 3.65 7.17 -2.91 -0.02 3.63 16 16 C 0.01 0.65 5.30 84.65 0.45 1.10 16 17 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 18 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 N -0.46 -13.97 2.01 -514.86 -1.03 -15.00 16 23 C 0.12 2.27 5.56 86.38 0.48 2.75 16 24 C -0.15 -2.77 1.46 -51.94 -0.08 -2.85 16 25 C -0.11 -3.13 8.48 71.98 0.61 -2.52 16 26 C 0.05 0.77 7.93 63.84 0.51 1.27 16 27 O -0.39 -7.61 12.56 -148.98 -1.87 -9.48 16 28 C 0.04 0.57 6.52 63.84 0.42 0.98 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.10 1.27 5.75 -2.39 -0.01 1.26 16 36 H 0.09 2.30 5.88 -2.39 -0.01 2.29 16 37 H 0.09 3.28 6.67 -2.38 -0.02 3.26 16 38 H 0.02 0.81 6.74 -2.39 -0.02 0.79 16 39 H 0.03 1.88 5.89 -2.39 -0.01 1.86 16 40 H 0.03 1.57 6.53 -2.39 -0.02 1.56 16 41 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.13 1.64 7.66 -2.39 -0.02 1.62 16 44 H 0.11 2.09 5.75 -2.39 -0.01 2.08 16 45 H 0.06 1.70 7.98 -2.39 -0.02 1.68 16 46 H 0.03 0.92 6.78 -2.38 -0.02 0.91 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.12 0.98 8.11 -2.39 -0.02 0.96 16 49 H 0.09 1.43 8.13 -2.39 -0.02 1.42 16 50 H 0.08 1.36 8.13 -2.38 -0.02 1.34 16 51 H 0.11 0.97 7.22 -2.39 -0.02 0.95 16 Total: -1.00 -76.07 394.89 2.70 -73.37 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.93 Total: 16.28 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 8.45 Total: 7.98 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -5.30 Total: -122.83 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -3.41 Total: -19.63 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -76.07 2.70 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401521246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.819 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds