Wall clock time and date at job start Tue Mar 31 2020 20:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99902 * 2 1 4 4 H 1.09001 * 109.47365 * 329.99384 * 3 2 1 5 5 C 1.53005 * 109.46790 * 209.99914 * 3 2 1 6 6 C 1.52995 * 109.47391 * 90.00236 * 3 2 1 7 7 N 1.46501 * 109.47274 * 179.97438 * 6 3 2 8 8 C 1.36733 * 127.14306 * 84.44285 * 7 6 3 9 9 C 1.50707 * 126.34235 * 359.94555 * 8 7 6 10 10 H 1.09004 * 110.80440 * 3.63099 * 9 8 7 11 11 C 1.54807 * 110.90881 * 239.99884 * 9 8 7 12 12 C 1.54099 * 104.18932 * 220.92501 * 11 9 8 13 13 O 1.43741 * 107.29300 * 357.96507 * 12 11 9 14 14 C 1.44385 * 106.97353 * 26.52077 * 13 12 11 15 15 N 1.30287 * 107.31329 * 179.97438 * 8 7 6 16 16 N 1.28531 * 110.04968 * 0.02562 * 15 8 7 17 17 C 1.31221 * 109.85974 * 359.74189 * 16 15 8 18 18 N 1.38580 * 126.47172 * 180.25617 * 17 16 15 19 19 C 1.46895 * 110.99867 * 100.62445 * 18 17 16 20 20 C 1.46902 * 111.00285 * 336.67040 * 18 17 16 21 21 H 1.08998 * 109.46818 * 59.99591 * 20 18 17 22 22 C 1.53005 * 109.46918 * 299.99741 * 20 18 17 23 23 C 1.50700 * 109.47356 * 180.02562 * 20 18 17 24 24 H 1.08004 * 119.99614 * 5.58845 * 23 20 18 25 25 C 1.37874 * 120.00100 * 185.59018 * 23 20 18 26 26 N 1.31508 * 120.00086 * 8.51973 * 25 23 20 27 27 Si 1.86798 * 119.99987 * 188.51721 * 25 23 20 28 28 H 1.48507 * 109.47106 * 94.99080 * 27 25 23 29 29 H 1.48494 * 109.47188 * 214.99258 * 27 25 23 30 30 H 1.48505 * 109.47341 * 334.99608 * 27 25 23 31 31 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46779 * 300.00569 * 1 2 3 33 33 H 1.09000 * 109.46958 * 60.00161 * 1 2 3 34 34 H 1.08999 * 109.47471 * 59.99573 * 5 3 2 35 35 H 1.08997 * 109.47086 * 300.00178 * 5 3 2 36 36 H 1.08999 * 109.47039 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.46945 * 299.99174 * 6 3 2 38 38 H 1.09003 * 109.47693 * 59.99801 * 6 3 2 39 39 H 1.09005 * 110.48888 * 339.60076 * 11 9 8 40 40 H 1.09003 * 110.49087 * 102.11177 * 11 9 8 41 41 H 1.08999 * 109.87898 * 117.39349 * 12 11 9 42 42 H 1.09008 * 109.87807 * 238.54467 * 12 11 9 43 43 H 1.09009 * 110.61400 * 201.43705 * 14 13 12 44 44 H 1.08990 * 110.62239 * 78.43636 * 14 13 12 45 45 H 1.08998 * 109.47561 * 63.49373 * 19 18 17 46 46 H 1.09006 * 109.47157 * 183.49150 * 19 18 17 47 47 H 1.09000 * 109.47059 * 303.48855 * 19 18 17 48 48 H 1.09001 * 109.46816 * 64.28106 * 22 20 18 49 49 H 1.08997 * 109.46994 * 184.27404 * 22 20 18 50 50 H 1.08993 * 109.47172 * 304.27847 * 22 20 18 51 51 H 0.97002 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7213 6 6 2.2177 1.7713 1.4424 7 7 2.8141 3.1095 1.4424 8 6 2.1594 4.3052 1.3367 9 6 0.6716 4.4993 1.1955 10 1 0.1495 3.5440 1.2509 11 6 0.3334 5.2381 -0.1222 12 6 -0.7798 6.2271 0.2742 13 8 -1.0636 6.0150 1.6673 14 6 0.1383 5.4848 2.2664 15 7 3.0601 5.2456 1.3801 16 7 4.2305 4.7293 1.5045 17 6 4.1379 3.4213 1.5531 18 7 5.1868 2.5256 1.6883 19 6 5.2985 2.0513 3.0740 20 6 6.4498 3.1212 1.2322 21 1 6.6687 4.0082 1.8267 22 6 6.3261 3.5128 -0.2417 23 6 7.5645 2.1199 1.3935 24 1 7.3427 1.1111 1.7089 25 6 8.8674 2.4918 1.1385 26 7 9.1597 3.7550 0.9186 27 14 10.2176 1.2013 1.1055 28 1 10.4440 0.7574 -0.2935 29 1 11.4712 1.7824 1.6494 30 1 9.8109 0.0379 1.9341 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.2112 0.9311 -1.7489 35 1 4.0241 0.5692 -0.2074 36 1 3.8025 2.2588 -0.7209 37 1 1.2569 1.8015 1.9563 38 1 2.8830 1.0775 1.9564 39 1 1.2064 5.7751 -0.4934 40 1 -0.0279 4.5345 -0.8723 41 1 -0.4396 7.2506 0.1169 42 1 -1.6739 6.0362 -0.3194 43 1 -0.0944 4.9574 3.1915 44 1 0.8599 6.2811 2.4484 45 1 4.3983 1.4986 3.3427 46 1 6.1666 1.3983 3.1657 47 1 5.4138 2.9048 3.7421 48 1 5.5718 4.2924 -0.3484 49 1 7.2859 3.8844 -0.6006 50 1 6.0326 2.6407 -0.8259 51 1 10.0765 4.0166 0.7396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433390585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:24 Heat of formation + Delta-G solvation = 6.278981 kcal Electronic energy + Delta-G solvation = -32019.580567 eV Core-core repulsion = 27956.494815 eV Total energy + Delta-G solvation = -4063.085752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73120 -39.44271 -38.63981 -37.12112 -35.11752 -33.30571 -32.64499 -31.31040 -29.95631 -29.37446 -28.34335 -27.17017 -26.62932 -25.41325 -24.41022 -23.61210 -22.46265 -21.93116 -21.59261 -19.95636 -19.37162 -17.44375 -16.86428 -16.69957 -16.41522 -16.19929 -15.74276 -15.40898 -15.35268 -15.09122 -14.77247 -14.53842 -14.14889 -13.75402 -13.60448 -13.45780 -13.14150 -12.92986 -12.43169 -12.38351 -12.32108 -11.98207 -11.83448 -11.73356 -11.65757 -11.60517 -11.19425 -11.15992 -11.04206 -10.96536 -10.87668 -10.69218 -10.50557 -10.36905 -10.33300 -10.15279 -9.98984 -9.88589 -9.49220 -9.19312 -8.71600 -8.46878 -7.55196 -6.09455 -4.13555 2.02452 2.44397 3.22581 3.27449 3.35062 3.36581 3.54695 3.69698 4.25091 4.30341 4.39505 4.42936 4.52585 4.57961 4.64930 4.78282 4.83377 4.92558 4.99770 5.02315 5.06605 5.23701 5.26406 5.37688 5.41593 5.45641 5.50539 5.62754 5.64885 5.68813 5.73084 5.90360 5.91519 5.96923 6.07805 6.16173 6.28439 6.48061 6.52080 6.59874 6.77922 6.84515 6.92392 6.98035 7.10747 7.39981 7.56274 7.71820 7.86774 8.09644 8.41576 8.89237 9.21487 9.50286 10.99146 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.003714 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.027692 B = 7537.273973 C = 8791.286545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.079 3.921 4 H 0.061 0.939 5 C -0.147 4.147 6 C 0.092 3.908 7 N -0.474 5.474 8 C 0.152 3.848 9 C -0.026 4.026 10 H 0.093 0.907 11 C -0.145 4.145 12 C 0.050 3.950 13 O -0.377 6.377 14 C 0.061 3.939 15 N -0.277 5.277 16 N -0.312 5.312 17 C 0.392 3.608 18 N -0.461 5.461 19 C 0.041 3.959 20 C 0.227 3.773 21 H 0.032 0.968 22 C -0.128 4.128 23 C -0.518 4.518 24 H 0.065 0.935 25 C 0.067 3.933 26 N -0.882 5.882 27 Si 0.896 3.104 28 H -0.280 1.280 29 H -0.287 1.287 30 H -0.273 1.273 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.100 0.900 47 H 0.029 0.971 48 H 0.022 0.978 49 H 0.072 0.928 50 H 0.030 0.970 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.542 -3.437 -0.841 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.021 3.979 4 H 0.079 0.921 5 C -0.204 4.204 6 C -0.033 4.033 7 N -0.171 5.171 8 C -0.115 4.115 9 C -0.047 4.047 10 H 0.111 0.889 11 C -0.184 4.184 12 C -0.027 4.027 13 O -0.296 6.296 14 C -0.016 4.016 15 N -0.117 5.117 16 N -0.156 5.156 17 C 0.036 3.964 18 N -0.187 5.187 19 C -0.106 4.106 20 C 0.123 3.877 21 H 0.050 0.950 22 C -0.186 4.186 23 C -0.556 4.556 24 H 0.083 0.917 25 C -0.137 4.137 26 N -0.519 5.519 27 Si 0.723 3.277 28 H -0.206 1.206 29 H -0.213 1.213 30 H -0.198 1.198 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.118 0.882 47 H 0.047 0.953 48 H 0.041 0.959 49 H 0.091 0.909 50 H 0.049 0.951 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.902 -2.495 -1.073 20.086 hybrid contribution 0.420 -1.314 0.183 1.392 sum -19.482 -3.809 -0.891 19.870 Atomic orbital electron populations 1.22853 0.81274 1.02967 0.99929 1.88011 1.19471 1.26915 1.94797 1.22413 0.96873 0.84682 0.93970 0.92097 1.21884 0.94305 1.04288 0.99920 1.22273 0.99857 0.81775 0.99356 1.46114 1.07133 1.07195 1.56634 1.23950 0.96264 0.81851 1.09415 1.20917 0.85997 1.00607 0.97192 0.88887 1.23013 1.00152 0.98647 0.96541 1.23149 0.97957 0.98783 0.82765 1.88863 1.34084 1.85181 1.21480 1.23584 0.86995 0.95644 0.95382 1.73924 0.95163 1.25830 1.16782 1.74870 1.14371 1.03982 1.22375 1.23072 0.83487 0.90386 0.99410 1.59210 1.04675 1.33423 1.21377 1.22317 1.02232 1.00001 0.86036 1.19352 0.80691 0.94671 0.92953 0.94992 1.21768 1.01035 0.97867 0.97948 1.21006 0.90288 0.97064 1.47275 0.91654 1.24893 0.98446 0.95206 0.95116 1.69991 1.19566 1.15060 1.47278 0.86530 0.81279 0.81577 0.78287 1.20648 1.21302 1.19813 0.89368 0.94146 0.93907 0.92296 0.90262 0.90493 0.89763 0.87213 0.89117 0.90309 0.91794 0.89779 0.88772 0.90243 0.93722 0.88155 0.95274 0.95912 0.90905 0.95074 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.37 -4.30 10.35 -35.23 -0.36 -4.67 16 3 C 0.08 0.95 3.05 -26.73 -0.08 0.87 16 4 H 0.06 0.67 7.79 -51.93 -0.40 0.26 16 5 C -0.15 -2.14 9.21 37.16 0.34 -1.80 16 6 C 0.09 1.12 5.62 -4.04 -0.02 1.10 16 7 N -0.47 -7.32 2.39 -114.08 -0.27 -7.59 16 8 C 0.15 2.30 6.63 -154.02 -1.02 1.28 16 9 C -0.03 -0.28 3.53 -89.76 -0.32 -0.60 16 10 H 0.09 0.84 7.17 -51.93 -0.37 0.47 16 11 C -0.14 -1.43 6.59 -25.21 -0.17 -1.60 16 12 C 0.05 0.46 7.70 37.73 0.29 0.75 16 13 O -0.38 -4.27 11.52 -35.23 -0.41 -4.68 16 14 C 0.06 0.68 7.16 38.21 0.27 0.95 16 15 N -0.28 -5.26 11.87 32.99 0.39 -4.87 16 16 N -0.31 -6.81 10.17 30.32 0.31 -6.50 16 17 C 0.39 7.63 4.67 -318.87 -1.49 6.14 16 18 N -0.46 -9.44 4.62 -176.08 -0.81 -10.25 16 19 C 0.04 0.76 9.27 60.06 0.56 1.32 16 20 C 0.23 5.60 1.60 -68.86 -0.11 5.49 16 21 H 0.03 0.92 7.85 -51.93 -0.41 0.51 16 22 C -0.13 -3.13 8.70 37.16 0.32 -2.80 16 23 C -0.52 -13.41 7.61 -34.44 -0.26 -13.67 16 24 H 0.07 1.65 6.69 -52.48 -0.35 1.30 16 25 C 0.07 1.78 5.18 -17.82 -0.09 1.69 16 26 N -0.88 -24.87 12.12 55.43 0.67 -24.20 16 27 Si 0.90 20.61 29.55 -169.99 -5.02 15.58 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 33 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.33 6.05 -51.93 -0.31 1.01 16 37 H 0.08 0.80 7.20 -51.93 -0.37 0.43 16 38 H 0.11 1.43 6.92 -51.93 -0.36 1.07 16 39 H 0.09 1.07 7.79 -51.93 -0.40 0.66 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 43 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 44 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 45 H 0.04 0.68 7.02 -51.93 -0.36 0.31 16 46 H 0.10 1.91 6.11 -51.93 -0.32 1.59 16 47 H 0.03 0.56 8.13 -51.93 -0.42 0.13 16 48 H 0.02 0.54 6.46 -51.93 -0.34 0.20 16 49 H 0.07 1.95 6.79 -51.93 -0.35 1.59 16 50 H 0.03 0.72 7.65 -51.93 -0.40 0.32 16 51 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -30.81 399.95 -8.67 -39.47 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.51 Total: 1.26 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.68 Total: 0.41 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.29 Total: -53.41 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.77 Total: -9.34 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.81 -8.67 -39.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433390585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.752 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds