Wall clock time and date at job start Tue Mar 31 2020 20:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99902 * 2 1 4 4 H 1.09001 * 109.47365 * 329.99384 * 3 2 1 5 5 C 1.53005 * 109.46790 * 209.99914 * 3 2 1 6 6 C 1.52995 * 109.47391 * 90.00236 * 3 2 1 7 7 N 1.46501 * 109.47274 * 179.97438 * 6 3 2 8 8 C 1.36733 * 127.14306 * 84.44285 * 7 6 3 9 9 C 1.50707 * 126.34235 * 359.94555 * 8 7 6 10 10 H 1.09004 * 110.80440 * 3.63099 * 9 8 7 11 11 C 1.54807 * 110.90881 * 239.99884 * 9 8 7 12 12 C 1.54099 * 104.18932 * 220.92501 * 11 9 8 13 13 O 1.43741 * 107.29300 * 357.96507 * 12 11 9 14 14 C 1.44385 * 106.97353 * 26.52077 * 13 12 11 15 15 N 1.30287 * 107.31329 * 179.97438 * 8 7 6 16 16 N 1.28531 * 110.04968 * 0.02562 * 15 8 7 17 17 C 1.31221 * 109.85974 * 359.74189 * 16 15 8 18 18 N 1.38580 * 126.47172 * 180.25617 * 17 16 15 19 19 C 1.46895 * 110.99867 * 100.62445 * 18 17 16 20 20 C 1.46902 * 111.00285 * 336.67040 * 18 17 16 21 21 H 1.08998 * 109.46818 * 59.99591 * 20 18 17 22 22 C 1.53005 * 109.46918 * 299.99741 * 20 18 17 23 23 C 1.50700 * 109.47356 * 180.02562 * 20 18 17 24 24 H 1.08004 * 119.99614 * 5.58845 * 23 20 18 25 25 C 1.37874 * 120.00100 * 185.59018 * 23 20 18 26 26 N 1.31508 * 120.00086 * 8.51973 * 25 23 20 27 27 Si 1.86798 * 119.99987 * 188.51721 * 25 23 20 28 28 H 1.48507 * 109.47106 * 94.99080 * 27 25 23 29 29 H 1.48494 * 109.47188 * 214.99258 * 27 25 23 30 30 H 1.48505 * 109.47341 * 334.99608 * 27 25 23 31 31 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46779 * 300.00569 * 1 2 3 33 33 H 1.09000 * 109.46958 * 60.00161 * 1 2 3 34 34 H 1.08999 * 109.47471 * 59.99573 * 5 3 2 35 35 H 1.08997 * 109.47086 * 300.00178 * 5 3 2 36 36 H 1.08999 * 109.47039 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.46945 * 299.99174 * 6 3 2 38 38 H 1.09003 * 109.47693 * 59.99801 * 6 3 2 39 39 H 1.09005 * 110.48888 * 339.60076 * 11 9 8 40 40 H 1.09003 * 110.49087 * 102.11177 * 11 9 8 41 41 H 1.08999 * 109.87898 * 117.39349 * 12 11 9 42 42 H 1.09008 * 109.87807 * 238.54467 * 12 11 9 43 43 H 1.09009 * 110.61400 * 201.43705 * 14 13 12 44 44 H 1.08990 * 110.62239 * 78.43636 * 14 13 12 45 45 H 1.08998 * 109.47561 * 63.49373 * 19 18 17 46 46 H 1.09006 * 109.47157 * 183.49150 * 19 18 17 47 47 H 1.09000 * 109.47059 * 303.48855 * 19 18 17 48 48 H 1.09001 * 109.46816 * 64.28106 * 22 20 18 49 49 H 1.08997 * 109.46994 * 184.27404 * 22 20 18 50 50 H 1.08993 * 109.47172 * 304.27847 * 22 20 18 51 51 H 0.97002 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7213 6 6 2.2177 1.7713 1.4424 7 7 2.8141 3.1095 1.4424 8 6 2.1594 4.3052 1.3367 9 6 0.6716 4.4993 1.1955 10 1 0.1495 3.5440 1.2509 11 6 0.3334 5.2381 -0.1222 12 6 -0.7798 6.2271 0.2742 13 8 -1.0636 6.0150 1.6673 14 6 0.1383 5.4848 2.2664 15 7 3.0601 5.2456 1.3801 16 7 4.2305 4.7293 1.5045 17 6 4.1379 3.4213 1.5531 18 7 5.1868 2.5256 1.6883 19 6 5.2985 2.0513 3.0740 20 6 6.4498 3.1212 1.2322 21 1 6.6687 4.0082 1.8267 22 6 6.3261 3.5128 -0.2417 23 6 7.5645 2.1199 1.3935 24 1 7.3427 1.1111 1.7089 25 6 8.8674 2.4918 1.1385 26 7 9.1597 3.7550 0.9186 27 14 10.2176 1.2013 1.1055 28 1 10.4440 0.7574 -0.2935 29 1 11.4712 1.7824 1.6494 30 1 9.8109 0.0379 1.9341 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.2112 0.9311 -1.7489 35 1 4.0241 0.5692 -0.2074 36 1 3.8025 2.2588 -0.7209 37 1 1.2569 1.8015 1.9563 38 1 2.8830 1.0775 1.9564 39 1 1.2064 5.7751 -0.4934 40 1 -0.0279 4.5345 -0.8723 41 1 -0.4396 7.2506 0.1169 42 1 -1.6739 6.0362 -0.3194 43 1 -0.0944 4.9574 3.1915 44 1 0.8599 6.2811 2.4484 45 1 4.3983 1.4986 3.3427 46 1 6.1666 1.3983 3.1657 47 1 5.4138 2.9048 3.7421 48 1 5.5718 4.2924 -0.3484 49 1 7.2859 3.8844 -0.6006 50 1 6.0326 2.6407 -0.8259 51 1 10.0765 4.0166 0.7396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433390585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:23 Heat of formation + Delta-G solvation = -13.376325 kcal Electronic energy + Delta-G solvation = -32020.432885 eV Core-core repulsion = 27956.494815 eV Total energy + Delta-G solvation = -4063.938070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.09426 -40.30456 -39.51365 -38.79429 -36.27697 -34.92189 -33.96156 -32.43231 -31.32692 -30.86725 -29.57811 -28.26361 -27.34556 -27.22703 -26.09426 -24.69714 -23.53007 -23.26692 -22.73604 -21.24087 -20.76951 -18.62875 -18.27310 -17.87257 -17.57591 -17.24779 -17.02983 -16.76333 -16.48844 -16.17151 -15.98152 -15.66692 -15.38565 -15.22066 -14.80454 -14.50769 -14.32647 -14.17746 -13.85046 -13.73184 -13.49922 -13.22637 -13.04426 -12.86940 -12.79998 -12.71934 -12.56720 -12.47667 -12.45689 -12.39331 -12.22342 -12.18270 -12.05401 -11.93872 -11.79988 -11.54758 -11.37747 -11.05740 -10.71222 -10.61229 -10.47359 -10.24706 -9.19571 -8.15047 -6.25851 0.72734 1.19823 1.44622 1.46446 1.56369 1.81615 2.41395 2.68672 2.79582 3.06583 3.17778 3.32552 3.45828 3.57495 3.61616 3.71003 3.94165 3.95219 4.06899 4.12487 4.19010 4.22827 4.35722 4.47498 4.53453 4.55839 4.60103 4.66944 4.71260 4.72924 4.78387 4.81679 4.85953 4.87468 4.90046 4.92212 4.94901 4.96998 5.03938 5.10080 5.13738 5.30023 5.42948 5.52032 5.65160 5.79532 5.83962 5.96209 6.11499 6.16970 6.60877 6.85299 7.42040 7.80826 8.94356 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.003714 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.027692 B = 7537.273973 C = 8791.286545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.390 6.390 3 C 0.091 3.909 4 H 0.078 0.922 5 C -0.144 4.144 6 C 0.085 3.915 7 N -0.464 5.464 8 C 0.183 3.817 9 C -0.025 4.025 10 H 0.129 0.871 11 C -0.141 4.141 12 C 0.049 3.951 13 O -0.386 6.386 14 C 0.063 3.937 15 N -0.316 5.316 16 N -0.363 5.363 17 C 0.378 3.622 18 N -0.454 5.454 19 C 0.043 3.957 20 C 0.241 3.759 21 H -0.018 1.018 22 C -0.107 4.107 23 C -0.523 4.523 24 H 0.073 0.927 25 C 0.016 3.984 26 N -0.920 5.920 27 Si 0.962 3.038 28 H -0.278 1.278 29 H -0.288 1.288 30 H -0.260 1.260 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.012 0.988 48 H 0.017 0.983 49 H 0.043 0.957 50 H 0.038 0.962 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.847 -5.888 -0.904 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.308 6.308 3 C 0.032 3.968 4 H 0.096 0.904 5 C -0.201 4.201 6 C -0.037 4.037 7 N -0.159 5.159 8 C -0.086 4.086 9 C -0.046 4.046 10 H 0.147 0.853 11 C -0.180 4.180 12 C -0.027 4.027 13 O -0.305 6.305 14 C -0.014 4.014 15 N -0.155 5.155 16 N -0.206 5.206 17 C 0.021 3.979 18 N -0.179 5.179 19 C -0.104 4.104 20 C 0.135 3.865 21 H 0.000 1.000 22 C -0.166 4.166 23 C -0.561 4.561 24 H 0.091 0.909 25 C -0.183 4.183 26 N -0.558 5.558 27 Si 0.787 3.213 28 H -0.204 1.204 29 H -0.214 1.214 30 H -0.184 1.184 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.031 0.969 48 H 0.036 0.964 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.249 -4.965 -1.130 23.800 hybrid contribution 1.276 -0.523 0.193 1.393 sum -21.973 -5.488 -0.937 22.668 Atomic orbital electron populations 1.23135 0.79035 1.04388 1.01380 1.87996 1.21878 1.26112 1.94860 1.22169 0.95676 0.85633 0.93314 0.90368 1.21771 0.95786 1.01789 1.00771 1.22597 1.01270 0.79674 1.00177 1.46188 1.05510 1.08631 1.55600 1.24740 0.97587 0.80860 1.05396 1.21230 0.82912 1.02530 0.97935 0.85307 1.23009 0.99475 0.99034 0.96488 1.23286 0.98879 0.98421 0.82154 1.88865 1.33858 1.85237 1.22510 1.23532 0.86620 0.95063 0.96201 1.73842 0.95122 1.27279 1.19296 1.74754 1.16396 1.05629 1.23824 1.22830 0.84689 0.89805 1.00612 1.59105 1.03325 1.33036 1.22419 1.22358 1.03795 0.99422 0.84798 1.18924 0.82762 0.92769 0.92051 1.00005 1.21512 0.99128 0.97779 0.98160 1.21299 0.90792 0.97419 1.46625 0.90872 1.25730 1.00888 0.96942 0.94772 1.70142 1.19947 1.17161 1.48576 0.85480 0.78115 0.79285 0.78379 1.20360 1.21426 1.18360 0.88146 0.92249 0.92826 0.91522 0.92135 0.93559 0.85741 0.87844 0.91711 0.87552 0.92294 0.86980 0.86894 0.92696 0.89899 0.88947 0.96928 0.96365 0.93757 0.94248 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.40 16 2 O -0.39 -7.55 10.35 -148.98 -1.54 -9.09 16 3 C 0.09 1.89 3.05 30.59 0.09 1.99 16 4 H 0.08 1.38 7.79 -2.39 -0.02 1.36 16 5 C -0.14 -4.06 9.21 71.98 0.66 -3.40 16 6 C 0.09 1.80 5.62 86.38 0.49 2.29 16 7 N -0.46 -13.66 2.39 -514.85 -1.23 -14.89 16 8 C 0.18 5.29 6.63 137.65 0.91 6.20 16 9 C -0.03 -0.47 3.53 -10.24 -0.04 -0.50 16 10 H 0.13 1.57 7.17 -2.39 -0.02 1.55 16 11 C -0.14 -2.40 6.59 31.58 0.21 -2.19 16 12 C 0.05 0.76 7.70 72.35 0.56 1.32 16 13 O -0.39 -7.65 11.52 -148.98 -1.72 -9.36 16 14 C 0.06 1.25 7.16 72.67 0.52 1.77 16 15 N -0.32 -12.33 11.87 -49.54 -0.59 -12.92 16 16 N -0.36 -16.56 10.17 -58.00 -0.59 -17.15 16 17 C 0.38 14.99 4.67 260.11 1.21 16.20 16 18 N -0.45 -19.03 4.62 -710.99 -3.28 -22.31 16 19 C 0.04 1.60 9.27 127.69 1.18 2.79 16 20 C 0.24 12.45 1.60 44.17 0.07 12.52 16 21 H -0.02 -1.09 7.85 -2.39 -0.02 -1.11 16 22 C -0.11 -5.53 8.70 71.98 0.63 -4.91 16 23 C -0.52 -27.77 7.61 25.60 0.19 -27.58 16 24 H 0.07 3.70 6.69 -2.91 -0.02 3.68 16 25 C 0.02 0.90 5.18 84.65 0.44 1.34 16 26 N -0.92 -54.05 12.12 21.45 0.26 -53.79 16 27 Si 0.96 42.76 29.55 68.60 2.03 44.79 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 30 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.43 7.87 -2.39 -0.02 0.41 16 33 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.59 6.05 -2.39 -0.01 1.58 16 37 H 0.12 1.68 7.20 -2.39 -0.02 1.66 16 38 H 0.10 2.39 6.92 -2.39 -0.02 2.37 16 39 H 0.06 1.47 7.79 -2.38 -0.02 1.45 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.05 1.36 7.85 -2.39 -0.02 1.34 16 45 H 0.08 2.40 7.02 -2.39 -0.02 2.38 16 46 H 0.09 3.54 6.11 -2.38 -0.01 3.53 16 47 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 48 H 0.02 0.91 6.46 -2.39 -0.02 0.89 16 49 H 0.04 2.49 6.79 -2.39 -0.02 2.48 16 50 H 0.04 1.89 7.65 -2.39 -0.02 1.88 16 51 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.06 399.95 2.61 -69.44 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.92 Total: 16.05 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 8.36 Total: 9.24 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.43 Total: -121.06 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -3.26 Total: -18.45 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.06 2.61 -69.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433390585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.067 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds