Wall clock time and date at job start Tue Mar 31 2020 20:45:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42901 * 114.00298 * 2 1
4 4 H 1.09000 * 109.46874 * 30.00213 * 3 2 1
5 5 C 1.52993 * 109.46954 * 270.00338 * 3 2 1
6 6 C 1.53004 * 109.47141 * 150.00078 * 3 2 1
7 7 N 1.46494 * 109.47024 * 294.75205 * 6 3 2
8 8 C 1.36743 * 127.13662 * 95.42925 * 7 6 3
9 9 C 1.50700 * 126.34489 * 0.25179 * 8 7 6
10 10 H 1.09003 * 110.75092 * 1.74316 * 9 8 7
11 11 C 1.55307 * 110.84302 * 125.43447 * 9 8 7
12 12 C 1.54947 * 100.94188 * 152.32322 * 11 9 8
13 13 O 1.43643 * 105.13483 * 323.55814 * 12 11 9
14 14 C 1.43229 * 109.97368 * 24.42370 * 13 12 11
15 15 N 1.30291 * 107.30516 * 179.97438 * 8 7 6
16 16 N 1.28534 * 110.05521 * 359.97438 * 15 8 7
17 17 C 1.31221 * 109.85806 * 359.97438 * 16 15 8
18 18 N 1.38576 * 126.46842 * 180.02562 * 17 16 15
19 19 C 1.46895 * 111.00137 * 295.04820 * 18 17 16
20 20 C 1.46905 * 111.00264 * 59.00584 * 18 17 16
21 21 H 1.08999 * 109.46917 * 299.99503 * 20 18 17
22 22 C 1.53001 * 109.46914 * 59.99985 * 20 18 17
23 23 C 1.50701 * 109.46981 * 179.97438 * 20 18 17
24 24 H 1.07999 * 119.99915 * 359.97438 * 23 20 18
25 25 C 1.37877 * 119.99759 * 180.02562 * 23 20 18
26 26 N 1.31506 * 120.00083 * 359.97438 * 25 23 20
27 27 Si 1.86797 * 120.00102 * 180.02562 * 25 23 20
28 28 H 1.48498 * 109.47377 * 89.98977 * 27 25 23
29 29 H 1.48497 * 109.47571 * 209.99583 * 27 25 23
30 30 H 1.48510 * 109.46884 * 329.99611 * 27 25 23
31 31 H 1.08990 * 109.47179 * 59.99716 * 1 2 3
32 32 H 1.08995 * 109.46998 * 180.02562 * 1 2 3
33 33 H 1.08997 * 109.46495 * 299.99913 * 1 2 3
34 34 H 1.09002 * 109.47651 * 59.99547 * 5 3 2
35 35 H 1.09004 * 109.47332 * 179.97438 * 5 3 2
36 36 H 1.09000 * 109.47227 * 299.99658 * 5 3 2
37 37 H 1.08995 * 109.46762 * 174.75485 * 6 3 2
38 38 H 1.09000 * 109.46783 * 54.75557 * 6 3 2
39 39 H 1.08999 * 111.12574 * 270.24005 * 11 9 8
40 40 H 1.08998 * 111.12785 * 34.40239 * 11 9 8
41 41 H 1.08994 * 110.31151 * 204.63753 * 12 11 9
42 42 H 1.09010 * 110.30718 * 82.47047 * 12 11 9
43 43 H 1.09002 * 109.83533 * 238.77506 * 14 13 12
44 44 H 1.08999 * 109.90982 * 117.84884 * 14 13 12
45 45 H 1.09005 * 109.47402 * 65.70915 * 19 18 17
46 46 H 1.08998 * 109.47242 * 185.70838 * 19 18 17
47 47 H 1.09003 * 109.47712 * 305.71249 * 19 18 17
48 48 H 1.08998 * 109.47254 * 59.99761 * 22 20 18
49 49 H 1.08998 * 109.47018 * 180.02562 * 22 20 18
50 50 H 1.08997 * 109.47050 * 299.99660 * 22 20 18
51 51 H 0.97008 * 120.00335 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9993 0.5139
5 6 2.2177 1.7713 -1.4424
6 6 3.3590 1.2632 0.7213
7 7 3.1473 0.9388 2.1341
8 6 3.2191 -0.2959 2.7174
9 6 3.5396 -1.5944 2.0230
10 1 3.7449 -1.4266 0.9657
11 6 4.7308 -2.3116 2.7148
12 6 4.4185 -3.7916 2.3786
13 8 2.9870 -3.8954 2.4370
14 6 2.3936 -2.6126 2.2055
15 7 2.9650 -0.1407 3.9858
16 7 2.7397 1.0986 4.2418
17 6 2.8394 1.8064 3.1413
18 7 2.6643 3.1760 3.0241
19 6 1.2785 3.5574 3.3274
20 6 3.6101 3.9030 3.8814
21 1 3.4507 3.6181 4.9214
22 6 5.0422 3.5547 3.4707
23 6 3.3903 5.3859 3.7270
24 1 2.6249 5.7517 3.0586
25 6 4.1671 6.2756 4.4384
26 7 5.0994 5.8302 5.2519
27 14 3.8943 8.1137 4.2476
28 1 2.8946 8.5720 5.2455
29 1 5.1766 8.8299 4.4667
30 1 3.3947 8.4006 2.8788
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3632 0.5138 0.8900
34 1 1.2568 1.8014 -1.9563
35 1 2.6606 2.7673 -1.4425
36 1 2.8829 1.0774 -1.9563
37 1 3.8447 2.2356 0.6406
38 1 3.9915 0.5020 0.2645
39 1 5.6815 -2.0023 2.2804
40 1 4.7195 -2.1426 3.7915
41 1 4.8761 -4.4517 3.1153
42 1 4.7750 -4.0355 1.3777
43 1 1.7799 -2.3292 3.0606
44 1 1.7804 -2.6443 1.3049
45 1 1.0666 3.3525 4.3769
46 1 1.1428 4.6208 3.1303
47 1 0.5976 2.9818 2.7003
48 1 5.2014 3.8396 2.4307
49 1 5.7439 4.0938 4.1071
50 1 5.2014 2.4822 3.5820
51 1 5.6457 6.4562 5.7527
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001433390588.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:45:32
Heat of formation + Delta-G solvation = -18.495836 kcal
Electronic energy + Delta-G solvation = -32076.127269 eV
Core-core repulsion = 28011.967200 eV
Total energy + Delta-G solvation = -4064.160069 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-44.04188 -40.28312 -39.43913 -38.77703 -36.07505 -34.99874 -33.97726 -32.63666
-31.42890 -30.83908 -29.46948 -28.07158 -27.52153 -27.25313 -26.11368 -24.44114
-23.59821 -23.22252 -22.66943 -21.31281 -20.81966 -18.61735 -18.33095 -17.76633
-17.63583 -17.43348 -17.12126 -16.75593 -16.43865 -16.09799 -15.80779 -15.72829
-15.44887 -15.17902 -14.75577 -14.25593 -14.24389 -14.14639 -13.78039 -13.70511
-13.47533 -13.20121 -13.15083 -13.07026 -12.83703 -12.74009 -12.61454 -12.55383
-12.48059 -12.39222 -12.23256 -12.22213 -12.05791 -12.04319 -11.84826 -11.51297
-11.18354 -11.08568 -10.59132 -10.55648 -10.51345 -9.91396 -9.57423 -8.14864
-6.29327 0.72883 1.27899 1.45856 1.46618 1.57039 1.78741 2.41346
2.66617 2.80837 2.97876 3.17069 3.25724 3.54983 3.63590 3.72952
3.79595 3.98428 4.06233 4.13395 4.16751 4.20472 4.30466 4.38650
4.41214 4.47499 4.56547 4.58956 4.64120 4.73360 4.74188 4.77860
4.82207 4.84449 4.85066 4.89540 4.91770 4.93408 4.94452 4.99106
5.09969 5.20058 5.27642 5.35938 5.54363 5.62929 5.86550 5.94601
6.00028 6.11735 6.13393 6.60121 6.81366 7.40217 7.75369 8.92310
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.013976 B = 0.003720 C = 0.003239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.001068 B = 7525.935724 C = 8641.352838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.391 6.391
3 C 0.077 3.923
4 H 0.053 0.947
5 C -0.161 4.161
6 C 0.108 3.892
7 N -0.455 5.455
8 C 0.200 3.800
9 C -0.021 4.021
10 H 0.128 0.872
11 C -0.145 4.145
12 C 0.055 3.945
13 O -0.400 6.400
14 C 0.078 3.922
15 N -0.325 5.325
16 N -0.362 5.362
17 C 0.365 3.635
18 N -0.461 5.461
19 C 0.056 3.944
20 C 0.236 3.764
21 H -0.031 1.031
22 C -0.110 4.110
23 C -0.521 4.521
24 H 0.076 0.924
25 C 0.014 3.986
26 N -0.922 5.922
27 Si 0.968 3.032
28 H -0.279 1.279
29 H -0.286 1.286
30 H -0.259 1.259
31 H 0.059 0.941
32 H 0.100 0.900
33 H 0.022 0.978
34 H 0.071 0.929
35 H 0.076 0.924
36 H 0.079 0.921
37 H 0.111 0.889
38 H 0.125 0.875
39 H 0.106 0.894
40 H 0.065 0.935
41 H 0.098 0.902
42 H 0.090 0.910
43 H 0.050 0.950
44 H 0.091 0.909
45 H 0.013 0.987
46 H 0.093 0.907
47 H 0.066 0.934
48 H 0.044 0.956
49 H 0.066 0.934
50 H -0.002 1.002
51 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.147 -13.571 -17.263 22.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.310 6.310
3 C 0.019 3.981
4 H 0.071 0.929
5 C -0.219 4.219
6 C -0.014 4.014
7 N -0.147 5.147
8 C -0.069 4.069
9 C -0.042 4.042
10 H 0.146 0.854
11 C -0.184 4.184
12 C -0.021 4.021
13 O -0.320 6.320
14 C 0.001 3.999
15 N -0.165 5.165
16 N -0.205 5.205
17 C 0.007 3.993
18 N -0.187 5.187
19 C -0.091 4.091
20 C 0.130 3.870
21 H -0.014 1.014
22 C -0.168 4.168
23 C -0.559 4.559
24 H 0.094 0.906
25 C -0.185 4.185
26 N -0.561 5.561
27 Si 0.793 3.207
28 H -0.205 1.205
29 H -0.212 1.212
30 H -0.183 1.183
31 H 0.077 0.923
32 H 0.118 0.882
33 H 0.041 0.959
34 H 0.090 0.910
35 H 0.095 0.905
36 H 0.098 0.902
37 H 0.130 0.870
38 H 0.143 0.857
39 H 0.125 0.875
40 H 0.084 0.916
41 H 0.116 0.884
42 H 0.108 0.892
43 H 0.069 0.931
44 H 0.109 0.891
45 H 0.032 0.968
46 H 0.111 0.889
47 H 0.085 0.915
48 H 0.063 0.937
49 H 0.084 0.916
50 H 0.017 0.983
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.139 -14.032 -16.146 21.788
hybrid contribution -0.043 1.799 0.283 1.822
sum -4.182 -12.233 -15.862 20.463
Atomic orbital electron populations
1.22850 0.80003 1.03637 0.99927 1.87836 1.20775 1.27193 1.95227
1.22424 0.93218 0.85235 0.97249 0.92892 1.22127 1.03731 1.02552
0.93492 1.22369 0.98718 1.05206 0.75103 1.46394 1.51757 1.06430
1.10130 1.24679 1.03690 0.88029 0.90491 1.21158 0.96963 0.86015
1.00029 0.85414 1.23372 0.98166 0.95414 1.01439 1.23548 0.80300
0.95181 1.03040 1.88379 1.20550 1.29352 1.93678 1.22939 0.94334
0.81299 1.01354 1.73836 1.19050 1.10360 1.13219 1.74599 1.22761
0.99081 1.24087 1.22678 1.00762 0.91553 0.84273 1.59201 1.07196
0.96036 1.56270 1.22182 0.85800 1.02756 0.98374 1.19082 0.87852
0.92457 0.87625 1.01380 1.21544 0.99416 0.95460 1.00418 1.21321
1.19090 0.89706 1.25819 0.90641 1.25765 0.94561 1.03726 0.94479
1.70052 1.22031 1.36090 1.27897 0.85400 0.77316 0.78993 0.78987
1.20469 1.21201 1.18287 0.92290 0.88210 0.95929 0.90997 0.90537
0.90180 0.87041 0.85730 0.87507 0.91630 0.88372 0.89242 0.93135
0.89118 0.96842 0.88874 0.91534 0.93712 0.91574 0.98324 0.92796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.54 10.82 113.37 1.23 1.77 16
2 O -0.39 -7.81 10.30 -148.98 -1.53 -9.34 16
3 C 0.08 1.56 2.96 30.59 0.09 1.65 16
4 H 0.05 1.29 7.79 -2.39 -0.02 1.28 16
5 C -0.16 -2.26 9.53 71.98 0.69 -1.58 16
6 C 0.11 2.52 5.68 86.38 0.49 3.01 16
7 N -0.46 -14.84 2.76 -514.87 -1.42 -16.26 16
8 C 0.20 6.52 6.61 137.64 0.91 7.43 16
9 C -0.02 -0.48 3.39 -10.28 -0.03 -0.51 16
10 H 0.13 2.25 6.90 -2.39 -0.02 2.23 16
11 C -0.15 -3.03 6.60 32.05 0.21 -2.82 16
12 C 0.05 0.96 7.78 72.65 0.56 1.52 16
13 O -0.40 -9.60 11.36 -148.98 -1.69 -11.29 16
14 C 0.08 1.87 7.39 72.45 0.54 2.40 16
15 N -0.32 -13.59 11.85 -49.54 -0.59 -14.18 16
16 N -0.36 -17.09 12.12 -58.01 -0.70 -17.79 16
17 C 0.36 15.16 5.03 260.11 1.31 16.47 16
18 N -0.46 -19.74 4.66 -710.99 -3.31 -23.05 16
19 C 0.06 2.21 9.15 127.69 1.17 3.38 16
20 C 0.24 12.16 1.99 44.17 0.09 12.25 16
21 H -0.03 -1.94 8.08 -2.39 -0.02 -1.96 16
22 C -0.11 -5.52 8.84 71.98 0.64 -4.89 16
23 C -0.52 -27.32 7.95 25.60 0.20 -27.12 16
24 H 0.08 3.74 6.40 -2.91 -0.02 3.72 16
25 C 0.01 0.75 5.30 84.66 0.45 1.20 16
26 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16
27 Si 0.97 41.82 29.54 68.60 2.03 43.85 16
28 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16
29 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16
30 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16
31 H 0.06 0.78 7.87 -2.39 -0.02 0.77 16
32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
33 H 0.02 0.45 8.08 -2.39 -0.02 0.43 16
34 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16
35 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16
36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
37 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16
38 H 0.12 2.14 7.01 -2.39 -0.02 2.13 16
39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
40 H 0.06 1.77 7.88 -2.39 -0.02 1.75 16
41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16
43 H 0.05 1.48 7.69 -2.39 -0.02 1.47 16
44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
45 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16
46 H 0.09 3.54 6.30 -2.39 -0.02 3.52 16
47 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16
48 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16
49 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16
50 H 0.00 -0.11 7.22 -2.39 -0.02 -0.13 16
51 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16
Total: -1.00 -71.34 407.23 2.46 -68.88
By element:
Atomic # 1 Polarization: 16.74 SS G_CDS: 0.91 Total: 17.65 kcal
Atomic # 6 Polarization: 5.62 SS G_CDS: 8.53 Total: 14.15 kcal
Atomic # 7 Polarization: -118.12 SS G_CDS: -5.78 Total: -123.90 kcal
Atomic # 8 Polarization: -17.41 SS G_CDS: -3.23 Total: -20.63 kcal
Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal
Total: -71.34 2.46 -68.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001433390588.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.385 kcal
(2) G-P(sol) polarization free energy of solvation -71.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.957 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds