Wall clock time and date at job start Tue Mar 31 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47504 * 2 1 4 4 C 1.42902 * 114.00184 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46981 * 180.02562 * 4 3 2 6 6 N 1.30295 * 126.34857 * 89.95792 * 5 4 3 7 7 N 1.28528 * 110.05328 * 180.02562 * 6 5 4 8 8 C 1.31213 * 109.86068 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.47453 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00183 * 111.49174 * 9 8 7 11 11 C 1.50695 * 109.47298 * 307.25870 * 10 9 8 12 12 H 1.08001 * 120.00223 * 266.72582 * 11 10 9 13 13 C 1.37876 * 119.99932 * 86.45172 * 11 10 9 14 14 N 1.31510 * 120.00137 * 9.06423 * 13 11 10 15 15 Si 1.86801 * 120.00156 * 189.05980 * 13 11 10 16 16 H 1.48496 * 109.46972 * 84.99180 * 15 13 11 17 17 H 1.48502 * 109.47363 * 204.99406 * 15 13 11 18 18 H 1.48501 * 109.47090 * 324.99454 * 15 13 11 19 19 C 1.46905 * 110.99756 * 347.53533 * 9 8 7 20 20 C 1.52997 * 109.47181 * 200.21524 * 19 9 8 21 21 O 1.42903 * 109.46699 * 61.76582 * 20 19 9 22 22 C 1.42906 * 113.99762 * 184.81218 * 21 20 19 23 23 N 1.36451 * 107.05717 * 0.22473 * 8 7 6 24 24 C 1.46495 * 127.14093 * 179.77441 * 23 8 7 25 25 H 1.09001 * 115.54941 * 82.34195 * 24 23 8 26 26 C 1.53001 * 117.49779 * 296.67446 * 24 23 8 27 27 C 1.53000 * 117.50045 * 228.04997 * 24 23 8 28 28 H 1.09003 * 117.49806 * 0.02562 * 27 24 23 29 29 C 1.53001 * 117.50163 * 214.97651 * 27 24 23 30 30 H 1.08995 * 109.47119 * 59.99599 * 1 2 3 31 31 H 1.08994 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46818 * 299.99434 * 1 2 3 33 33 H 1.09004 * 109.47314 * 240.00543 * 2 1 3 34 34 H 1.08999 * 109.47607 * 120.00409 * 2 1 3 35 35 H 1.09001 * 109.47014 * 60.00379 * 4 3 2 36 36 H 1.08994 * 109.47036 * 299.99791 * 4 3 2 37 37 H 1.09004 * 109.46769 * 187.25836 * 10 9 8 38 38 H 1.08993 * 109.47267 * 67.26277 * 10 9 8 39 39 H 0.97003 * 120.00622 * 185.20549 * 14 13 11 40 40 H 1.09003 * 109.47154 * 320.21530 * 19 9 8 41 41 H 1.09001 * 109.46780 * 80.21577 * 19 9 8 42 42 H 1.09001 * 109.47247 * 181.76377 * 20 19 9 43 43 H 1.08998 * 109.46997 * 301.76655 * 20 19 9 44 44 H 1.09002 * 109.46886 * 295.17778 * 22 21 20 45 45 H 1.08997 * 109.47251 * 55.17439 * 22 21 20 46 46 H 1.08996 * 109.46946 * 175.17750 * 22 21 20 47 47 H 1.08991 * 117.49704 * 359.97438 * 26 24 23 48 48 H 1.09005 * 117.49918 * 144.99738 * 26 24 23 49 49 H 1.09003 * 109.46611 * 60.00492 * 29 27 24 50 50 H 1.09000 * 109.47081 * 179.97438 * 29 27 24 51 51 H 1.09000 * 109.47316 * 300.00544 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0184 3.6618 1.0499 7 7 4.3361 4.8540 0.6898 8 6 4.3566 4.9336 -0.6197 9 7 4.6555 6.0584 -1.3722 10 6 5.9318 5.8939 -2.0806 11 6 7.0041 5.4983 -1.0985 12 1 7.6219 6.2558 -0.6392 13 6 7.1929 4.1697 -0.7821 14 7 6.5653 3.2359 -1.4630 15 14 8.3402 3.6959 0.6139 16 1 7.6022 3.7507 1.9014 17 1 8.8470 2.3178 0.3921 18 1 9.4834 4.6426 0.6581 19 6 4.6706 7.2642 -0.5332 20 6 4.4979 8.5019 -1.4159 21 8 3.2338 8.4408 -2.0797 22 6 3.0172 9.4986 -3.0158 23 7 4.0224 3.7012 -1.1009 24 6 3.9082 3.3013 -2.5056 25 1 4.8451 3.0409 -2.9979 26 6 2.8333 3.9882 -3.3504 27 6 2.6534 2.5307 -2.9209 28 1 1.9126 2.3216 -2.1491 29 6 2.8095 1.4530 -3.9957 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8909 36 1 3.8340 0.9764 0.8891 37 1 6.2058 6.8345 -2.5585 38 1 5.8291 5.1176 -2.8387 39 1 6.6383 2.3070 -1.1934 40 1 3.8545 7.2154 0.1878 41 1 5.6209 7.3259 -0.0028 42 1 4.5404 9.3982 -0.7972 43 1 5.2964 8.5337 -2.1571 44 1 2.9774 10.4502 -2.4858 45 1 3.8341 9.5183 -3.7371 46 1 2.0749 9.3340 -3.5383 47 1 2.2109 4.7372 -2.8610 48 1 3.0631 4.1795 -4.3987 49 1 3.5121 0.6946 -3.6503 50 1 1.8419 0.9901 -4.1893 51 1 3.1859 1.9063 -4.9128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434688005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:10 Heat of formation + Delta-G solvation = 33.419949 kcal Electronic energy + Delta-G solvation = -32590.770476 eV Core-core repulsion = 28528.861645 eV Total energy + Delta-G solvation = -4061.908831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74381 -37.93640 -37.68935 -37.27075 -36.12755 -32.66179 -32.11542 -31.59963 -29.81297 -28.85449 -27.97774 -26.91595 -25.83495 -25.16289 -23.15240 -22.71092 -22.54694 -21.43511 -20.56912 -19.29691 -19.09126 -16.79156 -16.55337 -16.29107 -16.07466 -15.99019 -15.68731 -15.01274 -14.82451 -14.73738 -14.36497 -14.22466 -13.86688 -13.55073 -13.11958 -13.03672 -12.84337 -12.61612 -12.43949 -12.27268 -12.17636 -11.97658 -11.63516 -11.37727 -11.33433 -11.15463 -11.04109 -10.98296 -10.94132 -10.77070 -10.47411 -10.37380 -10.16117 -10.03370 -9.82183 -9.45298 -9.41434 -9.20258 -9.09188 -8.78622 -8.56079 -8.34764 -7.01071 -6.24633 -4.32436 2.88190 3.27065 3.31012 3.33273 3.44055 3.93250 4.06142 4.24964 4.31886 4.36017 4.85331 5.04567 5.06466 5.11009 5.18125 5.28398 5.30012 5.41284 5.44500 5.46621 5.53751 5.55947 5.57743 5.65617 5.74247 5.76814 5.81626 5.85299 5.91630 5.94899 6.04214 6.08379 6.10321 6.17174 6.21599 6.29310 6.40108 6.59439 6.74580 6.80643 6.82351 6.96308 7.22417 7.34303 7.42355 7.57662 7.68003 7.77212 7.95476 8.17530 8.56473 8.78425 9.40612 10.01890 10.76804 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.005575 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.550798 B = 5021.297051 C = 6484.082933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.167 3.833 5 C 0.153 3.847 6 N -0.283 5.283 7 N -0.349 5.349 8 C 0.448 3.552 9 N -0.458 5.458 10 C 0.170 3.830 11 C -0.553 4.553 12 H 0.055 0.945 13 C 0.092 3.908 14 N -0.878 5.878 15 Si 0.883 3.117 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.077 3.923 20 C 0.070 3.930 21 O -0.375 6.375 22 C 0.033 3.967 23 N -0.404 5.404 24 C 0.102 3.898 25 H 0.151 0.849 26 C -0.162 4.162 27 C -0.167 4.167 28 H 0.114 0.886 29 C -0.114 4.114 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.032 0.968 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -2.492 -5.721 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.301 6.301 4 C 0.089 3.911 5 C -0.115 4.115 6 N -0.126 5.126 7 N -0.195 5.195 8 C 0.092 3.908 9 N -0.183 5.183 10 C 0.048 3.952 11 C -0.592 4.592 12 H 0.073 0.927 13 C -0.113 4.113 14 N -0.515 5.515 15 Si 0.710 3.290 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.052 4.052 20 C -0.007 4.007 21 O -0.293 6.293 22 C -0.065 4.065 23 N -0.095 5.095 24 C -0.003 4.003 25 H 0.168 0.832 26 C -0.200 4.200 27 C -0.186 4.186 28 H 0.132 0.868 29 C -0.172 4.172 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.496 -2.198 -4.717 10.828 hybrid contribution 1.676 -0.729 -0.127 1.832 sum -7.820 -2.927 -4.844 9.653 Atomic orbital electron populations 1.21719 0.93962 1.01817 1.03143 1.22409 0.95383 0.84123 0.99976 1.87965 1.20841 1.25984 1.95316 1.20202 0.81120 0.88446 1.01362 1.23279 1.09683 0.95173 0.83345 1.73689 1.16111 0.98304 1.24466 1.74466 1.24800 1.12285 1.07999 1.21911 0.95955 0.84628 0.88333 1.59498 1.35833 0.97848 1.25078 1.20062 0.83352 0.97330 0.94462 1.21511 1.18941 0.92520 1.26188 0.92715 1.24796 0.95059 0.96326 0.95147 1.69829 1.43618 1.00744 1.37292 0.86709 0.80964 0.77346 0.83995 1.19437 1.21429 1.20052 1.21796 1.02507 0.87135 0.93719 1.22661 0.85458 0.97344 0.95247 1.88019 1.36354 1.48381 1.56578 1.22649 1.01073 0.90339 0.92394 1.44681 1.50580 1.08475 1.05721 1.21997 0.94932 1.03046 0.80308 0.83188 1.23346 1.01858 0.94643 1.00142 1.22901 1.00416 0.93538 1.01750 0.86767 1.21290 1.01338 0.97449 0.97084 0.91967 0.91390 0.91878 0.93487 0.93461 0.91743 0.91099 0.94672 0.91884 0.92835 0.90650 0.90998 0.93601 0.93192 0.94989 0.94489 0.90383 0.88455 0.88235 0.92340 0.92418 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.06 0.70 6.66 37.16 0.25 0.95 16 3 O -0.38 -6.33 8.94 -35.23 -0.31 -6.65 16 4 C 0.17 2.99 5.55 36.01 0.20 3.19 16 5 C 0.15 3.43 7.37 -154.01 -1.14 2.30 16 6 N -0.28 -7.21 12.18 32.99 0.40 -6.81 16 7 N -0.35 -9.16 11.14 30.31 0.34 -8.82 16 8 C 0.45 10.87 4.62 -318.87 -1.47 9.39 16 9 N -0.46 -10.32 4.57 -175.88 -0.80 -11.12 16 10 C 0.17 4.01 5.42 -4.98 -0.03 3.98 16 11 C -0.55 -14.40 7.59 -34.44 -0.26 -14.66 16 12 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 13 C 0.09 2.42 4.50 -17.82 -0.08 2.34 16 14 N -0.88 -22.28 8.31 55.43 0.46 -21.82 16 15 Si 0.88 22.01 29.55 -169.99 -5.02 16.99 16 16 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.08 1.58 4.84 -3.82 -0.02 1.57 16 20 C 0.07 1.19 6.12 37.16 0.23 1.42 16 21 O -0.37 -6.54 10.60 -35.23 -0.37 -6.91 16 22 C 0.03 0.42 11.01 101.05 1.11 1.53 16 23 N -0.40 -8.96 1.67 -107.01 -0.18 -9.14 16 24 C 0.10 1.95 4.34 -67.93 -0.29 1.65 16 25 H 0.15 3.14 6.62 -51.93 -0.34 2.80 16 26 C -0.16 -2.70 10.09 -26.73 -0.27 -2.96 16 27 C -0.17 -2.58 5.29 -90.62 -0.48 -3.06 16 28 H 0.11 1.91 6.49 -51.93 -0.34 1.57 16 29 C -0.11 -1.40 10.19 37.16 0.38 -1.02 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.77 6.62 -51.93 -0.34 0.43 16 38 H 0.06 1.57 6.31 -51.93 -0.33 1.24 16 39 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 40 H 0.07 1.63 7.54 -51.93 -0.39 1.24 16 41 H 0.07 1.58 7.13 -51.93 -0.37 1.21 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.83 6.74 -51.93 -0.35 0.48 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 48 H 0.10 1.46 8.05 -51.93 -0.42 1.05 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -30.59 405.23 -9.61 -40.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.73 Total: 2.53 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.49 Total: 5.46 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.22 Total: -57.72 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.69 Total: -13.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.59 -9.61 -40.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434688005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.619 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds