Wall clock time and date at job start Tue Mar 31 2020 21:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47504 * 2 1 4 4 C 1.42902 * 114.00184 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46981 * 180.02562 * 4 3 2 6 6 N 1.30295 * 126.34857 * 89.95792 * 5 4 3 7 7 N 1.28528 * 110.05328 * 180.02562 * 6 5 4 8 8 C 1.31213 * 109.86068 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.47453 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00183 * 111.49174 * 9 8 7 11 11 C 1.50695 * 109.47298 * 307.25870 * 10 9 8 12 12 H 1.08001 * 120.00223 * 266.72582 * 11 10 9 13 13 C 1.37876 * 119.99932 * 86.45172 * 11 10 9 14 14 N 1.31510 * 120.00137 * 9.06423 * 13 11 10 15 15 Si 1.86801 * 120.00156 * 189.05980 * 13 11 10 16 16 H 1.48496 * 109.46972 * 84.99180 * 15 13 11 17 17 H 1.48502 * 109.47363 * 204.99406 * 15 13 11 18 18 H 1.48501 * 109.47090 * 324.99454 * 15 13 11 19 19 C 1.46905 * 110.99756 * 347.53533 * 9 8 7 20 20 C 1.52997 * 109.47181 * 200.21524 * 19 9 8 21 21 O 1.42903 * 109.46699 * 61.76582 * 20 19 9 22 22 C 1.42906 * 113.99762 * 184.81218 * 21 20 19 23 23 N 1.36451 * 107.05717 * 0.22473 * 8 7 6 24 24 C 1.46495 * 127.14093 * 179.77441 * 23 8 7 25 25 H 1.09001 * 115.54941 * 82.34195 * 24 23 8 26 26 C 1.53001 * 117.49779 * 296.67446 * 24 23 8 27 27 C 1.53000 * 117.50045 * 228.04997 * 24 23 8 28 28 H 1.09003 * 117.49806 * 0.02562 * 27 24 23 29 29 C 1.53001 * 117.50163 * 214.97651 * 27 24 23 30 30 H 1.08995 * 109.47119 * 59.99599 * 1 2 3 31 31 H 1.08994 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46818 * 299.99434 * 1 2 3 33 33 H 1.09004 * 109.47314 * 240.00543 * 2 1 3 34 34 H 1.08999 * 109.47607 * 120.00409 * 2 1 3 35 35 H 1.09001 * 109.47014 * 60.00379 * 4 3 2 36 36 H 1.08994 * 109.47036 * 299.99791 * 4 3 2 37 37 H 1.09004 * 109.46769 * 187.25836 * 10 9 8 38 38 H 1.08993 * 109.47267 * 67.26277 * 10 9 8 39 39 H 0.97003 * 120.00622 * 185.20549 * 14 13 11 40 40 H 1.09003 * 109.47154 * 320.21530 * 19 9 8 41 41 H 1.09001 * 109.46780 * 80.21577 * 19 9 8 42 42 H 1.09001 * 109.47247 * 181.76377 * 20 19 9 43 43 H 1.08998 * 109.46997 * 301.76655 * 20 19 9 44 44 H 1.09002 * 109.46886 * 295.17778 * 22 21 20 45 45 H 1.08997 * 109.47251 * 55.17439 * 22 21 20 46 46 H 1.08996 * 109.46946 * 175.17750 * 22 21 20 47 47 H 1.08991 * 117.49704 * 359.97438 * 26 24 23 48 48 H 1.09005 * 117.49918 * 144.99738 * 26 24 23 49 49 H 1.09003 * 109.46611 * 60.00492 * 29 27 24 50 50 H 1.09000 * 109.47081 * 179.97438 * 29 27 24 51 51 H 1.09000 * 109.47316 * 300.00544 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0184 3.6618 1.0499 7 7 4.3361 4.8540 0.6898 8 6 4.3566 4.9336 -0.6197 9 7 4.6555 6.0584 -1.3722 10 6 5.9318 5.8939 -2.0806 11 6 7.0041 5.4983 -1.0985 12 1 7.6219 6.2558 -0.6392 13 6 7.1929 4.1697 -0.7821 14 7 6.5653 3.2359 -1.4630 15 14 8.3402 3.6959 0.6139 16 1 7.6022 3.7507 1.9014 17 1 8.8470 2.3178 0.3921 18 1 9.4834 4.6426 0.6581 19 6 4.6706 7.2642 -0.5332 20 6 4.4979 8.5019 -1.4159 21 8 3.2338 8.4408 -2.0797 22 6 3.0172 9.4986 -3.0158 23 7 4.0224 3.7012 -1.1009 24 6 3.9082 3.3013 -2.5056 25 1 4.8451 3.0409 -2.9979 26 6 2.8333 3.9882 -3.3504 27 6 2.6534 2.5307 -2.9209 28 1 1.9126 2.3216 -2.1491 29 6 2.8095 1.4530 -3.9957 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8909 36 1 3.8340 0.9764 0.8891 37 1 6.2058 6.8345 -2.5585 38 1 5.8291 5.1176 -2.8387 39 1 6.6383 2.3070 -1.1934 40 1 3.8545 7.2154 0.1878 41 1 5.6209 7.3259 -0.0028 42 1 4.5404 9.3982 -0.7972 43 1 5.2964 8.5337 -2.1571 44 1 2.9774 10.4502 -2.4858 45 1 3.8341 9.5183 -3.7371 46 1 2.0749 9.3340 -3.5383 47 1 2.2109 4.7372 -2.8610 48 1 3.0631 4.1795 -4.3987 49 1 3.5121 0.6946 -3.6503 50 1 1.8419 0.9901 -4.1893 51 1 3.1859 1.9063 -4.9128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434688005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:09 Heat of formation + Delta-G solvation = 15.853721 kcal Electronic energy + Delta-G solvation = -32591.532205 eV Core-core repulsion = 28528.861645 eV Total energy + Delta-G solvation = -4062.670560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.51375 -39.34156 -39.03683 -38.62040 -37.70334 -34.58797 -33.74510 -32.79053 -31.22907 -30.48281 -29.20308 -28.53954 -27.03217 -26.82026 -24.95007 -24.11094 -23.63449 -23.09768 -21.91161 -20.99083 -20.66794 -18.57058 -18.08535 -17.84922 -17.44284 -17.39318 -16.89157 -16.64435 -16.55944 -16.19461 -15.90427 -15.54112 -15.33822 -14.77849 -14.67399 -14.52673 -14.31618 -13.99342 -13.67926 -13.59254 -13.35011 -13.21909 -13.06342 -12.93757 -12.77593 -12.73606 -12.44833 -12.35626 -12.30735 -12.21398 -12.09009 -12.05567 -11.82592 -11.56903 -11.43354 -11.23632 -10.78006 -10.66640 -10.59544 -10.45363 -10.33284 -10.16802 -8.86988 -8.25315 -6.35652 1.20000 1.23062 1.30733 1.36870 1.70388 2.21070 2.32110 2.70854 2.87693 2.98627 3.08131 3.35070 3.68418 3.78810 3.89488 4.03926 4.16650 4.22042 4.22680 4.30717 4.32000 4.38547 4.45522 4.48330 4.54637 4.61735 4.65680 4.67164 4.79579 4.84592 4.88627 4.91312 4.95422 4.99021 5.02106 5.04495 5.07691 5.17535 5.22238 5.24902 5.29953 5.41175 5.47785 5.55704 5.63864 5.95388 6.07677 6.20494 6.28241 6.46223 6.65346 6.88026 7.35552 8.18965 8.71717 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.005575 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.550798 B = 5021.297051 C = 6484.082933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.401 6.401 4 C 0.174 3.826 5 C 0.158 3.842 6 N -0.326 5.326 7 N -0.385 5.385 8 C 0.433 3.567 9 N -0.450 5.450 10 C 0.184 3.816 11 C -0.566 4.566 12 H 0.041 0.959 13 C 0.068 3.932 14 N -0.869 5.869 15 Si 0.912 3.088 16 H -0.299 1.299 17 H -0.278 1.278 18 H -0.270 1.270 19 C 0.078 3.922 20 C 0.081 3.919 21 O -0.404 6.404 22 C 0.028 3.972 23 N -0.401 5.401 24 C 0.072 3.928 25 H 0.134 0.866 26 C -0.154 4.154 27 C -0.134 4.134 28 H 0.105 0.895 29 C -0.110 4.110 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.260 0.740 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 -3.537 -7.795 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.320 6.320 4 C 0.096 3.904 5 C -0.111 4.111 6 N -0.169 5.169 7 N -0.231 5.231 8 C 0.075 3.925 9 N -0.174 5.174 10 C 0.060 3.940 11 C -0.605 4.605 12 H 0.059 0.941 13 C -0.137 4.137 14 N -0.506 5.506 15 Si 0.740 3.260 16 H -0.226 1.226 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.050 4.050 20 C 0.004 3.996 21 O -0.323 6.323 22 C -0.069 4.069 23 N -0.091 5.091 24 C -0.032 4.032 25 H 0.152 0.848 26 C -0.191 4.191 27 C -0.153 4.153 28 H 0.123 0.877 29 C -0.167 4.167 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.140 0.860 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.647 -3.250 -6.814 13.052 hybrid contribution 1.943 -0.428 0.524 2.058 sum -8.704 -3.678 -6.290 11.351 Atomic orbital electron populations 1.21740 0.92571 1.03507 1.02431 1.22748 0.96450 0.82124 1.01392 1.87935 1.19499 1.29029 1.95520 1.20203 0.82389 0.85540 1.02310 1.24146 1.07430 0.96651 0.82860 1.73592 1.18426 0.98703 1.26160 1.74337 1.26076 1.13187 1.09476 1.22167 0.96302 0.85788 0.88226 1.59531 1.34858 0.97919 1.25121 1.19871 0.83009 0.97486 0.93603 1.21629 1.19620 0.92296 1.26946 0.94067 1.25092 0.95924 0.96728 0.95962 1.69878 1.43299 1.00421 1.37010 0.86272 0.80187 0.77822 0.81693 1.22638 1.20318 1.19517 1.21798 1.00797 0.88194 0.94195 1.22493 0.85783 0.96091 0.95182 1.87961 1.36148 1.50546 1.57684 1.22870 1.02110 0.89892 0.91988 1.44876 1.49591 1.07680 1.06907 1.22062 0.95718 1.06482 0.78964 0.84848 1.23351 1.00043 0.95167 1.00571 1.22946 0.97044 0.93773 1.01560 0.87731 1.21332 1.02940 0.96378 0.96053 0.92249 0.88461 0.93030 0.91523 0.92533 0.90201 0.90593 0.93233 0.93153 0.93048 0.92333 0.92905 0.90937 0.92759 0.93137 0.93599 0.89018 0.90475 0.86006 0.91919 0.89992 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.05 1.06 6.66 71.98 0.48 1.54 16 3 O -0.40 -12.78 8.94 -148.98 -1.33 -14.11 16 4 C 0.17 6.10 5.55 71.24 0.40 6.50 16 5 C 0.16 7.21 7.37 137.64 1.01 8.23 16 6 N -0.33 -17.22 12.18 -49.53 -0.60 -17.82 16 7 N -0.39 -21.00 11.14 -58.00 -0.65 -21.64 16 8 C 0.43 21.53 4.62 260.11 1.20 22.74 16 9 N -0.45 -20.62 4.57 -710.38 -3.25 -23.87 16 10 C 0.18 8.69 5.42 85.56 0.46 9.15 16 11 C -0.57 -29.96 7.59 25.60 0.19 -29.77 16 12 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 13 C 0.07 3.62 4.50 84.65 0.38 4.00 16 14 N -0.87 -44.27 8.31 21.45 0.18 -44.09 16 15 Si 0.91 45.70 29.55 68.60 2.03 47.73 16 16 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 18 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 19 C 0.08 3.32 4.84 86.30 0.42 3.74 16 20 C 0.08 2.70 6.12 71.98 0.44 3.14 16 21 O -0.40 -13.65 10.60 -148.98 -1.58 -15.23 16 22 C 0.03 0.64 11.01 113.37 1.25 1.89 16 23 N -0.40 -17.97 1.67 -492.47 -0.82 -18.80 16 24 C 0.07 2.69 4.34 44.99 0.20 2.88 16 25 H 0.13 5.51 6.62 -2.39 -0.02 5.50 16 26 C -0.15 -4.91 10.09 30.60 0.31 -4.60 16 27 C -0.13 -3.88 5.29 -10.79 -0.06 -3.93 16 28 H 0.10 3.30 6.49 -2.39 -0.02 3.28 16 29 C -0.11 -2.30 10.19 71.98 0.73 -1.56 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 2.51 7.72 -2.39 -0.02 2.49 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.05 2.16 6.62 -2.38 -0.02 2.15 16 38 H 0.05 2.50 6.31 -2.39 -0.02 2.49 16 39 H 0.26 13.13 8.32 -92.71 -0.77 12.36 16 40 H 0.06 2.65 7.54 -2.39 -0.02 2.63 16 41 H 0.05 2.41 7.13 -2.39 -0.02 2.40 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 1.74 6.74 -2.39 -0.02 1.73 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 46 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.12 3.30 8.05 -2.38 -0.02 3.29 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 Total: -1.00 -68.58 405.23 3.04 -65.54 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.90 Total: 20.24 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 8.16 Total: 22.05 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -5.14 Total: -126.22 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -2.91 Total: -29.34 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.58 3.04 -65.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434688005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.398 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds