Wall clock time and date at job start Tue Mar 31 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.46813 * 2 1 4 4 C 1.42905 * 113.99949 * 180.02562 * 3 2 1 5 5 C 1.50691 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.30297 * 126.34877 * 274.97155 * 5 4 3 7 7 N 1.28534 * 110.05450 * 180.31342 * 6 5 4 8 8 C 1.31220 * 109.85911 * 359.72443 * 7 6 5 9 9 N 1.38577 * 126.46959 * 179.97438 * 8 7 6 10 10 C 1.46900 * 110.99604 * 110.59516 * 9 8 7 11 11 C 1.50703 * 109.47302 * 298.77528 * 10 9 8 12 12 H 1.08003 * 119.99701 * 5.09832 * 11 10 9 13 13 C 1.37868 * 120.00218 * 185.09117 * 11 10 9 14 14 N 1.31513 * 120.00150 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00122 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47030 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47314 * 120.00014 * 15 13 11 18 18 H 1.48504 * 109.47239 * 240.00330 * 15 13 11 19 19 C 1.46897 * 111.00283 * 346.63703 * 9 8 7 20 20 C 1.52996 * 109.47171 * 195.39754 * 19 9 8 21 21 O 1.42897 * 109.47174 * 62.98146 * 20 19 9 22 22 C 1.42905 * 114.00206 * 180.02562 * 21 20 19 23 23 N 1.36459 * 107.05230 * 359.97438 * 8 7 6 24 24 C 1.46499 * 127.13295 * 179.97438 * 23 8 7 25 25 H 1.09007 * 115.55956 * 99.05927 * 24 23 8 26 26 C 1.52996 * 117.50001 * 244.75255 * 24 23 8 27 27 C 1.53001 * 60.03197 * 107.48139 * 26 24 23 28 28 H 1.09002 * 117.49526 * 252.52260 * 27 26 24 29 29 C 1.52994 * 117.50062 * 107.50169 * 27 26 24 30 30 H 1.09005 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47029 * 299.99633 * 1 2 3 32 32 H 1.09001 * 109.47644 * 60.00059 * 1 2 3 33 33 H 1.09001 * 109.47029 * 240.00367 * 2 1 3 34 34 H 1.09001 * 109.47644 * 119.99941 * 2 1 3 35 35 H 1.09003 * 109.46983 * 59.99555 * 4 3 2 36 36 H 1.09006 * 109.46886 * 300.00259 * 4 3 2 37 37 H 1.08991 * 109.47584 * 58.78226 * 10 9 8 38 38 H 1.09008 * 109.47160 * 178.78217 * 10 9 8 39 39 H 0.97003 * 119.99863 * 179.97438 * 14 13 11 40 40 H 1.09000 * 109.46992 * 315.39932 * 19 9 8 41 41 H 1.08998 * 109.46747 * 75.40023 * 19 9 8 42 42 H 1.09005 * 109.47148 * 182.98341 * 20 19 9 43 43 H 1.09007 * 109.47427 * 302.98461 * 20 19 9 44 44 H 1.09002 * 109.47010 * 300.00382 * 22 21 20 45 45 H 1.08998 * 109.46811 * 60.00233 * 22 21 20 46 46 H 1.09001 * 109.47111 * 180.02562 * 22 21 20 47 47 H 1.08999 * 117.49968 * 214.98210 * 26 24 23 48 48 H 1.09001 * 117.49666 * 359.97438 * 26 24 23 49 49 H 1.09006 * 109.47172 * 111.38677 * 29 27 26 50 50 H 1.09003 * 109.47469 * 231.39131 * 29 27 26 51 51 H 1.09004 * 109.47085 * 351.39279 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 -0.0006 5 6 3.8193 2.9163 0.0001 6 7 3.9300 3.6865 -1.0450 7 7 4.2847 4.8685 -0.6858 8 6 4.4147 4.9177 0.6191 9 7 4.7839 6.0230 1.3690 10 6 3.6548 6.5182 2.1676 11 6 2.5367 6.9398 1.2494 12 1 2.6196 6.7730 0.1856 13 6 1.4078 7.5382 1.7674 14 7 1.3069 7.7416 3.0628 15 14 0.0215 8.0601 0.6293 16 1 0.3783 7.7231 -0.7723 17 1 -1.2250 7.3476 1.0083 18 1 -0.1905 9.5253 0.7469 19 6 5.3272 7.0841 0.5106 20 6 6.0668 8.1090 1.3727 21 8 7.1781 7.4792 2.0133 22 6 7.9403 8.3539 2.8477 23 7 4.1177 3.6749 1.0979 24 6 4.1247 3.2413 2.4973 25 1 3.1509 3.2153 2.9864 26 6 5.1475 2.1780 2.9023 27 6 5.3347 3.6287 3.3511 28 1 6.1251 4.2059 2.8712 29 6 5.0853 3.9497 4.8260 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8333 0.9768 -0.8908 36 1 3.8340 0.9765 0.8892 37 1 3.3029 5.7268 2.8292 38 1 3.9777 7.3725 2.7628 39 1 0.5128 8.1630 3.4271 40 1 6.0190 6.6492 -0.2108 41 1 4.5114 7.5760 -0.0192 42 1 6.4243 8.9234 0.7426 43 1 5.3885 8.5051 2.1286 44 1 8.3365 9.1737 2.2486 45 1 7.3006 8.7546 3.6340 46 1 8.7651 7.8005 3.2966 47 1 4.8467 1.4523 3.6579 48 1 5.8149 1.8007 2.1275 49 1 6.0294 4.2067 5.3066 50 1 4.3971 4.7914 4.9034 51 1 4.6519 3.0795 5.3190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434688052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:21 Heat of formation + Delta-G solvation = 5.993730 kcal Electronic energy + Delta-G solvation = -31687.676256 eV Core-core repulsion = 27624.578135 eV Total energy + Delta-G solvation = -4063.098121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.90287 -39.49315 -39.08216 -38.88595 -37.80703 -34.74984 -34.17446 -32.88486 -31.40379 -30.60156 -29.21219 -28.76317 -27.20187 -26.97337 -25.05077 -24.30320 -23.68641 -23.46249 -21.84236 -21.35685 -20.90920 -18.88732 -18.44187 -17.79959 -17.57639 -17.50396 -16.99626 -16.82620 -16.58156 -16.32609 -15.99932 -15.64865 -15.46447 -14.94201 -14.84818 -14.68049 -14.30044 -13.90912 -13.80350 -13.70463 -13.29795 -13.25681 -13.13606 -13.10344 -12.81429 -12.64170 -12.56439 -12.46997 -12.44059 -12.33907 -12.20626 -12.15076 -12.00689 -11.88701 -11.70659 -11.54804 -10.98012 -10.75887 -10.70240 -10.64373 -10.54004 -10.42708 -9.15615 -8.29035 -6.43106 0.74407 1.24773 1.28382 1.37177 1.41187 1.79777 2.29677 2.49211 2.84269 2.92283 2.99596 3.00302 3.42902 3.62149 3.64183 3.86223 4.01599 4.11207 4.17683 4.19282 4.23608 4.31015 4.36028 4.40766 4.51938 4.52893 4.59788 4.62929 4.64289 4.69251 4.78560 4.83588 4.86926 4.89407 4.92358 4.96533 5.00254 5.03451 5.07032 5.13985 5.19907 5.25198 5.25806 5.41257 5.62131 5.68045 5.83521 5.99356 6.20171 6.36307 6.46463 6.71219 7.26913 7.82226 8.75055 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.005123 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.754914 B = 5463.865367 C = 7158.227868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.417 6.417 4 C 0.167 3.833 5 C 0.160 3.840 6 N -0.308 5.308 7 N -0.372 5.372 8 C 0.402 3.598 9 N -0.439 5.439 10 C 0.219 3.781 11 C -0.560 4.560 12 H 0.044 0.956 13 C 0.032 3.968 14 N -0.910 5.910 15 Si 0.940 3.060 16 H -0.285 1.285 17 H -0.279 1.279 18 H -0.265 1.265 19 C 0.080 3.920 20 C 0.080 3.920 21 O -0.399 6.399 22 C 0.027 3.973 23 N -0.442 5.442 24 C 0.028 3.972 25 H 0.120 0.880 26 C -0.131 4.131 27 C -0.121 4.121 28 H 0.098 0.902 29 C -0.113 4.113 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.017 0.983 38 H 0.038 0.962 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.146 0.854 48 H 0.106 0.894 49 H 0.078 0.922 50 H 0.041 0.959 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -13.524 3.925 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.336 6.336 4 C 0.089 3.911 5 C -0.109 4.109 6 N -0.149 5.149 7 N -0.217 5.217 8 C 0.045 3.955 9 N -0.162 5.162 10 C 0.094 3.906 11 C -0.599 4.599 12 H 0.063 0.937 13 C -0.169 4.169 14 N -0.549 5.549 15 Si 0.766 3.234 16 H -0.210 1.210 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.047 4.047 20 C 0.003 3.997 21 O -0.318 6.318 22 C -0.069 4.069 23 N -0.135 5.135 24 C -0.076 4.076 25 H 0.137 0.863 26 C -0.168 4.168 27 C -0.139 4.139 28 H 0.117 0.883 29 C -0.171 4.171 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.117 0.883 47 H 0.164 0.836 48 H 0.124 0.876 49 H 0.097 0.903 50 H 0.060 0.940 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.967 -13.175 2.966 16.211 hybrid contribution -1.729 0.935 0.110 1.969 sum 7.238 -12.240 3.076 14.549 Atomic orbital electron populations 1.21795 0.93654 1.03529 1.02001 1.22755 0.95834 0.81749 1.02035 1.88008 1.20327 1.29519 1.95764 1.20541 0.82328 0.84129 1.04117 1.24746 1.05958 0.97952 0.82227 1.73703 1.17054 0.98078 1.26079 1.74521 1.24269 1.13456 1.09429 1.22708 0.96706 0.86951 0.89124 1.59240 1.31317 1.03919 1.21759 1.19518 0.84600 0.94864 0.91621 1.21915 1.03693 1.40419 0.93910 0.93738 1.25462 0.99959 0.95310 0.96202 1.69990 1.29533 1.43427 1.11934 0.85777 0.79762 0.78760 0.79062 1.21035 1.20445 1.18962 1.21907 0.97363 0.91511 0.93961 1.22434 0.87644 0.94092 0.95497 1.87915 1.42083 1.37892 1.63924 1.22882 0.95527 0.94824 0.93695 1.45557 1.51998 1.07884 1.08089 1.22187 0.97593 1.09105 0.78673 0.86286 1.23750 0.97775 0.91988 1.03304 1.22663 0.96478 0.98250 0.96558 0.88336 1.21326 1.02514 1.01943 0.91280 0.88040 0.93204 0.93302 0.91370 0.90927 0.88358 0.88445 0.96515 0.94431 0.92296 0.90918 0.92606 0.90611 0.93824 0.93020 0.94342 0.88329 0.83575 0.87589 0.90288 0.93981 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 10.28 71.98 0.74 -2.24 16 2 C 0.05 1.03 6.66 71.98 0.48 1.51 16 3 O -0.42 -12.92 10.33 -148.98 -1.54 -14.45 16 4 C 0.17 4.64 6.35 71.23 0.45 5.09 16 5 C 0.16 6.31 7.69 137.64 1.06 7.37 16 6 N -0.31 -14.51 12.18 -49.54 -0.60 -15.11 16 7 N -0.37 -18.71 11.08 -58.00 -0.64 -19.36 16 8 C 0.40 18.80 5.67 260.11 1.47 20.27 16 9 N -0.44 -19.84 4.11 -710.37 -2.92 -22.76 16 10 C 0.22 11.19 4.90 85.56 0.42 11.61 16 11 C -0.56 -32.03 7.53 25.60 0.19 -31.83 16 12 H 0.04 2.74 6.56 -2.91 -0.02 2.72 16 13 C 0.03 1.81 5.46 84.65 0.46 2.27 16 14 N -0.91 -52.33 13.29 21.44 0.28 -52.04 16 15 Si 0.94 46.30 29.54 68.60 2.03 48.33 16 16 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 17 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 19 C 0.08 3.41 4.69 86.30 0.41 3.81 16 20 C 0.08 2.86 6.06 71.98 0.44 3.30 16 21 O -0.40 -13.49 10.62 -148.98 -1.58 -15.07 16 22 C 0.03 0.65 11.01 113.37 1.25 1.90 16 23 N -0.44 -17.82 3.10 -492.35 -1.52 -19.34 16 24 C 0.03 0.90 4.87 45.01 0.22 1.11 16 25 H 0.12 4.05 8.14 -2.38 -0.02 4.03 16 26 C -0.13 -2.70 9.22 30.59 0.28 -2.42 16 27 C -0.12 -3.34 5.77 -10.77 -0.06 -3.40 16 28 H 0.10 3.26 7.99 -2.39 -0.02 3.24 16 29 C -0.11 -2.71 10.19 71.98 0.73 -1.98 16 30 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.00 7.03 -2.38 -0.02 1.98 16 37 H 0.02 0.91 7.02 -2.39 -0.02 0.89 16 38 H 0.04 2.01 6.53 -2.38 -0.02 2.00 16 39 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.07 3.06 7.75 -2.39 -0.02 3.05 16 41 H 0.06 2.65 6.48 -2.39 -0.02 2.63 16 42 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.04 1.70 6.58 -2.38 -0.02 1.68 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.15 1.95 8.05 -2.39 -0.02 1.93 16 48 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 1.48 7.90 -2.38 -0.02 1.46 16 Total: -1.00 -76.34 416.09 2.94 -73.40 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.90 Total: 20.03 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 8.54 Total: 16.38 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.41 Total: -128.61 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -3.12 Total: -29.53 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.34 2.94 -73.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434688052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.396 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds