Wall clock time and date at job start Tue Mar 31 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99691 * 2 1 4 4 C 1.53006 * 109.46902 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47137 * 176.97214 * 4 3 2 6 6 C 1.36737 * 127.13785 * 83.90829 * 5 4 3 7 7 C 1.50696 * 126.34772 * 0.02562 * 6 5 4 8 8 H 1.09005 * 109.47879 * 14.73818 * 7 6 5 9 9 C 1.53089 * 109.48476 * 254.71590 * 7 6 5 10 10 C 1.53177 * 109.16642 * 182.39769 * 9 7 6 11 11 C 1.53182 * 109.10991 * 56.93252 * 10 9 7 12 12 C 1.53103 * 109.15662 * 303.15241 * 11 10 9 13 13 O 1.42904 * 109.48983 * 134.76154 * 7 6 5 14 14 N 1.30295 * 107.30600 * 179.75717 * 6 5 4 15 15 N 1.28532 * 110.05498 * 0.24279 * 14 6 5 16 16 C 1.31218 * 109.85745 * 359.97438 * 15 14 6 17 17 N 1.38579 * 126.47213 * 180.02562 * 16 15 14 18 18 C 1.46901 * 111.00250 * 234.08690 * 17 16 15 19 19 C 1.46903 * 111.00036 * 358.04070 * 17 16 15 20 20 H 1.09006 * 109.46954 * 54.99601 * 19 17 16 21 21 C 1.53004 * 109.46821 * 294.99879 * 19 17 16 22 22 C 1.50695 * 109.47365 * 174.99960 * 19 17 16 23 23 H 1.07998 * 120.00287 * 114.80988 * 22 19 17 24 24 C 1.37874 * 120.00102 * 294.81633 * 22 19 17 25 25 N 1.31515 * 120.00310 * 173.97705 * 24 22 19 26 26 Si 1.86804 * 119.99976 * 353.97864 * 24 22 19 27 27 H 1.48500 * 109.47305 * 85.32496 * 26 24 22 28 28 H 1.48502 * 109.47304 * 205.32518 * 26 24 22 29 29 H 1.48502 * 109.47023 * 325.32564 * 26 24 22 30 30 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47187 * 300.00022 * 1 2 3 32 32 H 1.09000 * 109.47103 * 59.99866 * 1 2 3 33 33 H 1.08994 * 109.47325 * 60.00435 * 3 2 1 34 34 H 1.08990 * 109.47105 * 299.99729 * 3 2 1 35 35 H 1.09002 * 109.47085 * 56.97196 * 4 3 2 36 36 H 1.09003 * 109.46876 * 296.97436 * 4 3 2 37 37 H 1.08994 * 109.52488 * 62.48769 * 9 7 6 38 38 H 1.09004 * 109.57347 * 302.33159 * 9 7 6 39 39 H 1.08999 * 109.54601 * 176.84261 * 10 9 7 40 40 H 1.09005 * 109.54003 * 297.02399 * 10 9 7 41 41 H 1.08995 * 109.52154 * 62.96948 * 11 10 9 42 42 H 1.09001 * 109.52077 * 183.15952 * 11 10 9 43 43 H 1.09004 * 109.40878 * 297.49735 * 12 11 10 44 44 H 1.08995 * 109.48516 * 177.49962 * 12 11 10 45 45 H 1.09000 * 109.46778 * 51.21096 * 18 17 16 46 46 H 1.08991 * 109.47397 * 171.21487 * 18 17 16 47 47 H 1.08999 * 109.47001 * 291.21730 * 18 17 16 48 48 H 1.08997 * 109.47441 * 300.10792 * 21 19 17 49 49 H 1.09000 * 109.47034 * 60.11212 * 21 19 17 50 50 H 1.09000 * 109.46792 * 180.10715 * 21 19 17 51 51 H 0.97002 * 120.00033 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1312 2.5211 -0.0723 6 6 4.3653 3.3784 0.9669 7 6 4.0569 3.1257 2.4201 8 1 3.8593 2.0643 2.5705 9 6 2.8251 3.9373 2.8294 10 6 2.5539 3.7218 4.3215 11 6 3.8008 4.1151 5.1197 12 6 4.9954 3.2980 4.6205 13 8 5.1733 3.5205 3.2201 14 7 4.9097 4.4521 0.4684 15 7 5.0299 4.3345 -0.8059 16 6 4.5653 3.1696 -1.1917 17 7 4.5273 2.6869 -2.4902 18 6 3.1675 2.2697 -2.8573 19 6 5.0462 3.6828 -3.4374 20 1 6.0470 3.9881 -3.1317 21 6 4.1229 4.9027 -3.4515 22 6 5.1043 3.0807 -4.8176 23 1 4.4758 3.4715 -5.6041 24 6 5.9598 2.0309 -5.0764 25 7 5.9266 1.4282 -6.2449 26 14 7.1660 1.4645 -3.7673 27 1 6.4950 0.4989 -2.8604 28 1 8.3289 0.8078 -4.4166 29 1 7.6331 2.6367 -2.9842 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8538 0.5975 -0.8607 36 1 3.8605 0.6915 0.9168 37 1 1.9624 3.6068 2.2510 38 1 3.0061 4.9956 2.6413 39 1 1.7120 4.3404 4.6322 40 1 2.3215 2.6722 4.5020 41 1 4.0032 5.1769 4.9794 42 1 3.6352 3.9117 6.1777 43 1 4.8100 2.2389 4.7996 44 1 5.8946 3.6052 5.1544 45 1 2.4677 3.0749 -2.6337 46 1 3.1322 2.0431 -3.9228 47 1 2.8937 1.3817 -2.2876 48 1 3.1217 4.5971 -3.7553 49 1 4.0824 5.3393 -2.4536 50 1 4.5068 5.6408 -4.1557 51 1 6.5287 0.6899 -6.4270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454948573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:19 Heat of formation + Delta-G solvation = -12.801384 kcal Electronic energy + Delta-G solvation = -32024.768171 eV Core-core repulsion = 27960.855033 eV Total energy + Delta-G solvation = -4063.913139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.13805 -40.36306 -39.32657 -39.03317 -36.41290 -34.70115 -34.63040 -33.25054 -31.66820 -31.01725 -30.14423 -27.57137 -27.49014 -26.93810 -26.00442 -24.77049 -24.65079 -23.26405 -21.74205 -21.31326 -20.89300 -18.96259 -18.60797 -17.78522 -17.45113 -17.25939 -17.12922 -16.88256 -16.65759 -16.47404 -15.94948 -15.83129 -15.52282 -15.47210 -15.09431 -14.85247 -14.63660 -14.54561 -14.01512 -13.74795 -13.66134 -13.50874 -13.32261 -12.93706 -12.84171 -12.76868 -12.65812 -12.42987 -12.37804 -12.27052 -12.10875 -12.05089 -11.82330 -11.78326 -11.40703 -11.36820 -11.30662 -11.23651 -10.85863 -10.77173 -10.76716 -10.44823 -9.07880 -8.36588 -6.44650 0.65068 0.98010 1.35218 1.36385 1.49663 1.77004 2.34452 2.50595 2.65619 2.97727 3.17903 3.32604 3.42768 3.71338 3.72951 3.77272 3.91894 3.95689 4.02373 4.06405 4.12854 4.16551 4.26080 4.36419 4.40120 4.45645 4.49629 4.52868 4.55970 4.61065 4.67264 4.70121 4.80033 4.83807 4.85635 4.88829 4.92220 5.01376 5.04275 5.13159 5.17219 5.22772 5.29578 5.39901 5.51051 5.63628 5.80613 5.99913 6.17878 6.20754 6.42049 6.67524 7.28892 7.76609 8.76101 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.004162 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.912062 B = 6725.421840 C = 7812.687465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.101 3.899 5 N -0.476 5.476 6 C 0.170 3.830 7 C 0.193 3.807 8 H 0.096 0.904 9 C -0.138 4.138 10 C -0.115 4.115 11 C -0.155 4.155 12 C 0.053 3.947 13 O -0.396 6.396 14 N -0.296 5.296 15 N -0.361 5.361 16 C 0.375 3.625 17 N -0.463 5.463 18 C 0.035 3.965 19 C 0.192 3.808 20 H 0.034 0.966 21 C -0.151 4.151 22 C -0.509 4.509 23 H 0.055 0.945 24 C 0.056 3.944 25 N -0.924 5.924 26 Si 0.943 3.057 27 H -0.264 1.264 28 H -0.296 1.296 29 H -0.282 1.282 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 -3.221 24.847 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.025 4.025 4 C -0.022 4.022 5 N -0.175 5.175 6 C -0.099 4.099 7 C 0.133 3.867 8 H 0.114 0.886 9 C -0.177 4.177 10 C -0.152 4.152 11 C -0.193 4.193 12 C -0.023 4.023 13 O -0.315 6.315 14 N -0.134 5.134 15 N -0.206 5.206 16 C 0.019 3.981 17 N -0.187 5.187 18 C -0.111 4.111 19 C 0.088 3.912 20 H 0.052 0.948 21 C -0.210 4.210 22 C -0.547 4.547 23 H 0.073 0.927 24 C -0.146 4.146 25 N -0.562 5.562 26 Si 0.771 3.229 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.208 1.208 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.399 -2.510 24.519 27.590 hybrid contribution -0.228 -0.739 -0.186 0.796 sum -12.627 -3.250 24.332 27.605 Atomic orbital electron populations 1.23014 0.78436 1.04420 1.01171 1.87802 1.22185 1.26174 1.95665 1.22780 0.91312 0.86129 1.02247 1.21864 0.93597 0.79652 1.07059 1.46072 1.49389 1.16443 1.05592 1.24639 1.04241 0.88162 0.92898 1.20078 0.87555 0.99307 0.79781 0.88645 1.22150 0.96063 1.00589 0.98878 1.21611 0.98413 1.03348 0.91840 1.22207 0.94926 1.00650 1.01478 1.22918 1.00116 1.00069 0.79213 1.88032 1.38520 1.85741 1.19164 1.73863 1.16077 1.21668 1.01797 1.74692 1.26485 1.14325 1.05059 1.23395 0.97473 0.88744 0.88525 1.59668 1.23654 1.39560 0.95838 1.22513 0.84973 0.99532 1.04111 1.19586 0.94887 0.87644 0.89054 0.94769 1.22136 0.99274 0.98357 1.01225 1.20982 1.23373 1.16867 0.93515 0.92684 1.25468 0.97608 0.95397 0.96149 1.70005 1.38904 1.23189 1.24072 0.85757 0.78612 0.78644 0.79865 1.18934 1.22282 1.20814 0.87744 0.92185 0.93640 0.90585 0.92814 0.88280 0.85654 0.89920 0.92139 0.89629 0.89716 0.92103 0.88127 0.91198 0.87778 0.94236 0.89640 0.90125 0.93044 0.92538 0.92537 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.75 10.70 -148.98 -1.59 -9.34 16 3 C 0.05 1.05 5.71 71.98 0.41 1.46 16 4 C 0.10 2.48 5.31 86.38 0.46 2.94 16 5 N -0.48 -15.63 2.80 -514.86 -1.44 -17.07 16 6 C 0.17 5.56 6.95 137.64 0.96 6.52 16 7 C 0.19 4.43 3.06 29.88 0.09 4.52 16 8 H 0.10 1.65 7.10 -2.38 -0.02 1.64 16 9 C -0.14 -2.47 5.40 30.68 0.17 -2.31 16 10 C -0.11 -1.26 6.02 30.71 0.19 -1.08 16 11 C -0.16 -1.83 6.14 30.69 0.19 -1.64 16 12 C 0.05 0.80 6.84 72.02 0.49 1.30 16 13 O -0.40 -10.19 10.39 -148.98 -1.55 -11.74 16 14 N -0.30 -12.30 12.18 -49.54 -0.60 -12.90 16 15 N -0.36 -16.42 9.39 -58.00 -0.54 -16.97 16 16 C 0.37 15.56 6.71 260.11 1.74 17.31 16 17 N -0.46 -20.30 3.18 -711.00 -2.26 -22.56 16 18 C 0.03 1.29 7.35 127.69 0.94 2.23 16 19 C 0.19 9.42 1.38 44.17 0.06 9.48 16 20 H 0.03 1.87 6.50 -2.38 -0.02 1.86 16 21 C -0.15 -6.56 8.45 71.98 0.61 -5.95 16 22 C -0.51 -28.07 7.62 25.60 0.20 -27.88 16 23 H 0.05 3.26 7.99 -2.91 -0.02 3.24 16 24 C 0.06 3.20 5.46 84.65 0.46 3.66 16 25 N -0.92 -55.21 13.96 21.45 0.30 -54.91 16 26 Si 0.94 48.11 26.46 68.60 1.82 49.93 16 27 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 29 H -0.28 -15.04 6.51 99.48 0.65 -14.39 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 1.19 7.55 -2.39 -0.02 1.17 16 34 H 0.05 1.19 6.10 -2.39 -0.01 1.18 16 35 H 0.10 2.80 6.88 -2.39 -0.02 2.78 16 36 H 0.13 2.39 7.35 -2.39 -0.02 2.38 16 37 H 0.08 1.27 7.55 -2.39 -0.02 1.25 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.34 6.83 -2.39 -0.02 1.33 16 46 H 0.08 3.58 6.74 -2.39 -0.02 3.56 16 47 H 0.08 2.55 4.37 -2.39 -0.01 2.54 16 48 H 0.05 2.08 6.68 -2.39 -0.02 2.06 16 49 H 0.06 2.45 5.95 -2.39 -0.01 2.44 16 50 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.52 388.65 3.19 -71.33 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.86 Total: 12.10 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 8.21 Total: 12.12 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -4.55 Total: -124.40 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -3.14 Total: -21.08 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.82 Total: 49.93 kcal Total: -74.52 3.19 -71.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454948573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.530 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds