Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00034 * 2 1 4 4 C 1.53003 * 109.47002 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47053 * 179.97438 * 4 3 2 6 6 C 1.36736 * 127.13838 * 275.25342 * 5 4 3 7 7 C 1.50701 * 126.34581 * 359.96944 * 6 5 4 8 8 H 1.09003 * 109.47793 * 345.30323 * 7 6 5 9 9 C 1.53090 * 109.48153 * 105.34190 * 7 6 5 10 10 C 1.53176 * 109.16311 * 177.59117 * 9 7 6 11 11 C 1.53190 * 109.03428 * 303.01903 * 10 9 7 12 12 C 1.53088 * 109.16013 * 56.98229 * 11 10 9 13 13 O 1.42903 * 109.41461 * 302.38754 * 12 11 10 14 14 N 1.30295 * 107.30215 * 180.22829 * 6 5 4 15 15 N 1.28519 * 110.05772 * 359.77507 * 14 6 5 16 16 C 1.31217 * 109.86238 * 0.02562 * 15 14 6 17 17 N 1.38575 * 126.47720 * 179.97438 * 16 15 14 18 18 C 1.46904 * 110.99990 * 290.41802 * 17 16 15 19 19 C 1.46902 * 111.00242 * 54.37120 * 17 16 15 20 20 H 1.09004 * 109.47115 * 300.00129 * 19 17 16 21 21 C 1.53003 * 109.47116 * 59.99784 * 19 17 16 22 22 C 1.50691 * 109.47419 * 180.02562 * 19 17 16 23 23 H 1.08003 * 120.00195 * 0.02562 * 22 19 17 24 24 C 1.37883 * 120.00288 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99868 * 180.02562 * 24 22 19 26 26 Si 1.86800 * 119.99826 * 0.02562 * 24 22 19 27 27 H 1.48494 * 109.47206 * 89.99833 * 26 24 22 28 28 H 1.48498 * 109.47185 * 210.00274 * 26 24 22 29 29 H 1.48501 * 109.46884 * 329.99748 * 26 24 22 30 30 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47438 * 300.00161 * 1 2 3 32 32 H 1.08998 * 109.47057 * 60.00342 * 1 2 3 33 33 H 1.09005 * 109.47462 * 59.99854 * 3 2 1 34 34 H 1.08998 * 109.47300 * 299.99533 * 3 2 1 35 35 H 1.08997 * 109.47430 * 59.99825 * 4 3 2 36 36 H 1.09001 * 109.46888 * 299.99408 * 4 3 2 37 37 H 1.09000 * 109.52018 * 297.49569 * 9 7 6 38 38 H 1.08999 * 109.52429 * 57.68327 * 9 7 6 39 39 H 1.08993 * 109.54781 * 183.15362 * 10 9 7 40 40 H 1.08996 * 109.54249 * 62.88388 * 10 9 7 41 41 H 1.08997 * 109.51923 * 297.07648 * 11 10 9 42 42 H 1.09003 * 109.51783 * 176.88319 * 11 10 9 43 43 H 1.09001 * 109.47708 * 182.40804 * 12 11 10 44 44 H 1.08996 * 109.48394 * 62.37511 * 12 11 10 45 45 H 1.08999 * 109.47372 * 189.95912 * 18 17 16 46 46 H 1.09004 * 109.46813 * 309.96023 * 18 17 16 47 47 H 1.08998 * 109.47019 * 69.95508 * 18 17 16 48 48 H 1.08997 * 109.46933 * 300.00392 * 21 19 17 49 49 H 1.08997 * 109.46692 * 60.00520 * 21 19 17 50 50 H 1.09003 * 109.46751 * 180.02562 * 21 19 17 51 51 H 0.97001 * 119.99239 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 6 4.3764 3.3170 -1.0858 7 6 4.0824 2.9783 -2.5246 8 1 3.8849 1.9100 -2.6134 9 6 2.8561 3.7653 -2.9941 10 6 2.5999 3.4617 -4.4734 11 6 3.8561 3.8074 -5.2792 12 6 5.0437 3.0187 -4.7214 13 8 5.2075 3.3239 -3.3350 14 7 4.9162 4.4185 -0.6465 15 7 5.0238 4.3766 0.6335 16 6 4.5550 3.2366 1.0833 17 7 4.5040 2.8317 2.4076 18 6 5.8515 2.5659 2.9290 19 6 3.8057 3.8245 3.2351 20 1 4.3320 4.7775 3.1810 21 6 2.3756 4.0018 2.7210 22 6 3.7708 3.3511 4.6653 23 1 4.2226 2.4074 4.9330 24 6 3.1630 4.1233 5.6325 25 7 3.1331 3.7104 6.8808 26 14 2.3822 5.7560 5.1698 27 1 0.9600 5.5381 4.8027 28 1 2.4586 6.6862 6.3248 29 1 3.1077 6.3416 4.0139 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 1.9870 3.4705 -2.4059 38 1 3.0377 4.8325 -2.8674 39 1 1.7622 4.0614 -4.8290 40 1 2.3694 2.4032 -4.5938 41 1 4.0579 4.8755 -5.1986 42 1 3.7021 3.5426 -6.3253 43 1 5.9488 3.2929 -5.2633 44 1 4.8586 1.9511 -4.8392 45 1 5.7754 2.0844 3.9039 46 1 6.3846 1.9103 2.2405 47 1 6.3942 3.5059 3.0293 48 1 2.4013 4.3444 1.6866 49 1 1.8493 3.0488 2.7752 50 1 1.8576 4.7388 3.3348 51 1 2.7051 4.2535 7.5611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454948576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = 8.929446 kcal Electronic energy + Delta-G solvation = -31760.428502 eV Core-core repulsion = 27697.457683 eV Total energy + Delta-G solvation = -4062.970819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78101 -39.54477 -38.17732 -37.28620 -35.09018 -33.93528 -32.98804 -32.17578 -30.45154 -29.82065 -28.87661 -26.55621 -25.85599 -25.24728 -24.53620 -24.01882 -23.55757 -21.99098 -20.84122 -20.31443 -19.52674 -17.40813 -16.91042 -16.66229 -16.42527 -16.27373 -16.06944 -15.81578 -15.26956 -15.18269 -14.90368 -14.80276 -14.57963 -14.11577 -13.82011 -13.56271 -13.30420 -13.02426 -12.96919 -12.65743 -12.49187 -12.25149 -11.92518 -11.85440 -11.63552 -11.58285 -11.46962 -11.35716 -11.14528 -11.06580 -10.79481 -10.76834 -10.68879 -10.30909 -10.17439 -9.98677 -9.88569 -9.82100 -9.62008 -9.28238 -8.68704 -8.63820 -7.95820 -6.16351 -4.17091 1.86506 2.20957 3.09696 3.21776 3.35488 3.39245 3.46398 3.74728 4.20095 4.33402 4.39135 4.45477 4.52037 4.56354 4.59303 4.66890 4.77048 4.80674 4.97849 5.09554 5.14316 5.15850 5.21689 5.22784 5.35990 5.40577 5.48400 5.49076 5.53963 5.55127 5.58189 5.69667 5.74784 5.79143 5.98049 6.07249 6.18064 6.20650 6.24647 6.28998 6.43881 6.61554 6.72072 6.79824 6.88137 6.95106 7.07574 7.38532 7.61063 7.90319 8.48072 8.86638 9.06035 9.43846 10.95508 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.003773 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.560235 B = 7420.325648 C = 8251.532948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.463 5.463 6 C 0.159 3.841 7 C 0.193 3.807 8 H 0.071 0.929 9 C -0.144 4.144 10 C -0.120 4.120 11 C -0.158 4.158 12 C 0.061 3.939 13 O -0.360 6.360 14 N -0.258 5.258 15 N -0.317 5.317 16 C 0.384 3.616 17 N -0.462 5.462 18 C 0.051 3.949 19 C 0.197 3.803 20 H 0.023 0.977 21 C -0.145 4.145 22 C -0.513 4.513 23 H 0.087 0.913 24 C 0.078 3.922 25 N -0.893 5.893 26 Si 0.878 3.122 27 H -0.278 1.278 28 H -0.293 1.293 29 H -0.263 1.263 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.047 0.953 47 H 0.039 0.961 48 H 0.022 0.978 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -6.646 -23.024 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.030 4.030 4 C -0.008 4.008 5 N -0.159 5.159 6 C -0.108 4.108 7 C 0.132 3.868 8 H 0.089 0.911 9 C -0.183 4.183 10 C -0.158 4.158 11 C -0.196 4.196 12 C -0.016 4.016 13 O -0.278 6.278 14 N -0.099 5.099 15 N -0.160 5.160 16 C 0.029 3.971 17 N -0.189 5.189 18 C -0.096 4.096 19 C 0.091 3.909 20 H 0.041 0.959 21 C -0.203 4.203 22 C -0.551 4.551 23 H 0.105 0.895 24 C -0.125 4.125 25 N -0.530 5.530 26 Si 0.708 3.292 27 H -0.205 1.205 28 H -0.221 1.221 29 H -0.188 1.188 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.806 -5.768 -22.715 23.603 hybrid contribution -1.285 0.368 -0.207 1.353 sum -4.092 -5.399 -22.922 23.902 Atomic orbital electron populations 1.22776 0.80202 1.02975 1.00358 1.87780 1.20340 1.26690 1.95558 1.22802 0.92842 0.85599 1.01768 1.21505 0.92305 0.80829 1.06186 1.46135 1.47345 1.15814 1.06636 1.23875 1.06173 0.90357 0.90398 1.19810 0.86960 0.97648 0.82340 0.91092 1.22191 0.97043 1.02573 0.96486 1.21597 0.98109 1.01758 0.94321 1.22222 0.95516 1.02051 0.99807 1.22638 0.99064 0.98207 0.81661 1.88069 1.37363 1.84575 1.17787 1.74003 1.14613 1.17790 1.03491 1.74800 1.21234 1.17159 1.02840 1.22902 0.96620 0.88015 0.89580 1.59028 1.19526 1.46119 0.94228 1.22256 0.85855 1.00523 1.00972 1.19830 0.89690 0.89232 0.92182 0.95905 1.22195 0.99518 1.00907 0.97633 1.20850 1.38085 1.07882 0.88295 0.89489 1.24817 0.95482 0.97402 0.94781 1.69854 1.44001 1.38279 1.00892 0.86990 0.79908 0.84446 0.77884 1.20542 1.22059 1.18824 0.89255 0.93442 0.94145 0.91268 0.93172 0.88735 0.86426 0.90879 0.89626 0.90937 0.91686 0.90565 0.90719 0.88341 0.93111 0.88614 0.93463 0.94257 0.95887 0.92362 0.93188 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.65 10.70 -35.23 -0.38 -5.02 16 3 C 0.05 0.59 6.26 37.16 0.23 0.82 16 4 C 0.12 1.49 6.27 -4.04 -0.03 1.47 16 5 N -0.46 -7.54 2.81 -114.08 -0.32 -7.86 16 6 C 0.16 2.60 6.95 -154.02 -1.07 1.53 16 7 C 0.19 2.35 3.06 -27.84 -0.09 2.27 16 8 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 9 C -0.14 -1.50 5.40 -26.59 -0.14 -1.64 16 10 C -0.12 -0.90 6.03 -26.54 -0.16 -1.06 16 11 C -0.16 -1.14 6.14 -26.59 -0.16 -1.31 16 12 C 0.06 0.51 6.84 37.20 0.25 0.77 16 13 O -0.36 -4.65 10.39 -35.23 -0.37 -5.01 16 14 N -0.26 -5.18 12.18 32.99 0.40 -4.78 16 15 N -0.32 -6.94 12.01 30.31 0.36 -6.57 16 16 C 0.38 7.64 5.05 -318.87 -1.61 6.03 16 17 N -0.46 -9.65 4.63 -176.08 -0.82 -10.47 16 18 C 0.05 0.99 9.10 60.07 0.55 1.54 16 19 C 0.20 4.70 1.54 -68.87 -0.11 4.60 16 20 H 0.02 0.61 7.08 -51.93 -0.37 0.24 16 21 C -0.14 -3.25 8.55 37.16 0.32 -2.93 16 22 C -0.51 -13.80 8.57 -34.44 -0.30 -14.10 16 23 H 0.09 2.48 6.66 -52.48 -0.35 2.13 16 24 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 25 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 26 Si 0.88 21.80 24.37 -169.99 -4.14 17.66 16 27 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 1.01 7.55 -51.93 -0.39 0.62 16 34 H 0.05 0.55 7.54 -51.93 -0.39 0.16 16 35 H 0.09 0.97 7.31 -51.93 -0.38 0.59 16 36 H 0.12 1.61 8.11 -51.93 -0.42 1.19 16 37 H 0.07 0.72 7.54 -51.93 -0.39 0.33 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 1.89 6.47 -51.93 -0.34 1.56 16 46 H 0.05 0.79 8.06 -51.93 -0.42 0.38 16 47 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 48 H 0.02 0.48 7.22 -51.93 -0.38 0.11 16 49 H 0.06 1.24 7.55 -51.93 -0.39 0.85 16 50 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 51 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -33.02 397.05 -8.37 -41.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.58 Total: -1.20 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.29 Total: 1.48 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.40 Total: -55.28 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.74 Total: -10.04 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.02 -8.37 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454948576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.319 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds