Wall clock time and date at job start Tue Mar 31 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00034 * 2 1 4 4 C 1.53003 * 109.47002 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47053 * 179.97438 * 4 3 2 6 6 C 1.36736 * 127.13838 * 275.25342 * 5 4 3 7 7 C 1.50701 * 126.34581 * 359.96944 * 6 5 4 8 8 H 1.09003 * 109.47793 * 345.30323 * 7 6 5 9 9 C 1.53090 * 109.48153 * 105.34190 * 7 6 5 10 10 C 1.53176 * 109.16311 * 177.59117 * 9 7 6 11 11 C 1.53190 * 109.03428 * 303.01903 * 10 9 7 12 12 C 1.53088 * 109.16013 * 56.98229 * 11 10 9 13 13 O 1.42903 * 109.41461 * 302.38754 * 12 11 10 14 14 N 1.30295 * 107.30215 * 180.22829 * 6 5 4 15 15 N 1.28519 * 110.05772 * 359.77507 * 14 6 5 16 16 C 1.31217 * 109.86238 * 0.02562 * 15 14 6 17 17 N 1.38575 * 126.47720 * 179.97438 * 16 15 14 18 18 C 1.46904 * 110.99990 * 290.41802 * 17 16 15 19 19 C 1.46902 * 111.00242 * 54.37120 * 17 16 15 20 20 H 1.09004 * 109.47115 * 300.00129 * 19 17 16 21 21 C 1.53003 * 109.47116 * 59.99784 * 19 17 16 22 22 C 1.50691 * 109.47419 * 180.02562 * 19 17 16 23 23 H 1.08003 * 120.00195 * 0.02562 * 22 19 17 24 24 C 1.37883 * 120.00288 * 179.97438 * 22 19 17 25 25 N 1.31514 * 119.99868 * 180.02562 * 24 22 19 26 26 Si 1.86800 * 119.99826 * 0.02562 * 24 22 19 27 27 H 1.48494 * 109.47206 * 89.99833 * 26 24 22 28 28 H 1.48498 * 109.47185 * 210.00274 * 26 24 22 29 29 H 1.48501 * 109.46884 * 329.99748 * 26 24 22 30 30 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47438 * 300.00161 * 1 2 3 32 32 H 1.08998 * 109.47057 * 60.00342 * 1 2 3 33 33 H 1.09005 * 109.47462 * 59.99854 * 3 2 1 34 34 H 1.08998 * 109.47300 * 299.99533 * 3 2 1 35 35 H 1.08997 * 109.47430 * 59.99825 * 4 3 2 36 36 H 1.09001 * 109.46888 * 299.99408 * 4 3 2 37 37 H 1.09000 * 109.52018 * 297.49569 * 9 7 6 38 38 H 1.08999 * 109.52429 * 57.68327 * 9 7 6 39 39 H 1.08993 * 109.54781 * 183.15362 * 10 9 7 40 40 H 1.08996 * 109.54249 * 62.88388 * 10 9 7 41 41 H 1.08997 * 109.51923 * 297.07648 * 11 10 9 42 42 H 1.09003 * 109.51783 * 176.88319 * 11 10 9 43 43 H 1.09001 * 109.47708 * 182.40804 * 12 11 10 44 44 H 1.08996 * 109.48394 * 62.37511 * 12 11 10 45 45 H 1.08999 * 109.47372 * 189.95912 * 18 17 16 46 46 H 1.09004 * 109.46813 * 309.96023 * 18 17 16 47 47 H 1.08998 * 109.47019 * 69.95508 * 18 17 16 48 48 H 1.08997 * 109.46933 * 300.00392 * 21 19 17 49 49 H 1.08997 * 109.46692 * 60.00520 * 21 19 17 50 50 H 1.09003 * 109.46751 * 180.02562 * 21 19 17 51 51 H 0.97001 * 119.99239 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 6 4.3764 3.3170 -1.0858 7 6 4.0824 2.9783 -2.5246 8 1 3.8849 1.9100 -2.6134 9 6 2.8561 3.7653 -2.9941 10 6 2.5999 3.4617 -4.4734 11 6 3.8561 3.8074 -5.2792 12 6 5.0437 3.0187 -4.7214 13 8 5.2075 3.3239 -3.3350 14 7 4.9162 4.4185 -0.6465 15 7 5.0238 4.3766 0.6335 16 6 4.5550 3.2366 1.0833 17 7 4.5040 2.8317 2.4076 18 6 5.8515 2.5659 2.9290 19 6 3.8057 3.8245 3.2351 20 1 4.3320 4.7775 3.1810 21 6 2.3756 4.0018 2.7210 22 6 3.7708 3.3511 4.6653 23 1 4.2226 2.4074 4.9330 24 6 3.1630 4.1233 5.6325 25 7 3.1331 3.7104 6.8808 26 14 2.3822 5.7560 5.1698 27 1 0.9600 5.5381 4.8027 28 1 2.4586 6.6862 6.3248 29 1 3.1077 6.3416 4.0139 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 1.9870 3.4705 -2.4059 38 1 3.0377 4.8325 -2.8674 39 1 1.7622 4.0614 -4.8290 40 1 2.3694 2.4032 -4.5938 41 1 4.0579 4.8755 -5.1986 42 1 3.7021 3.5426 -6.3253 43 1 5.9488 3.2929 -5.2633 44 1 4.8586 1.9511 -4.8392 45 1 5.7754 2.0844 3.9039 46 1 6.3846 1.9103 2.2405 47 1 6.3942 3.5059 3.0293 48 1 2.4013 4.3444 1.6866 49 1 1.8493 3.0488 2.7752 50 1 1.8576 4.7388 3.3348 51 1 2.7051 4.2535 7.5611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454948576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:24 Heat of formation + Delta-G solvation = -13.535863 kcal Electronic energy + Delta-G solvation = -31761.402671 eV Core-core repulsion = 27697.457683 eV Total energy + Delta-G solvation = -4063.944988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.18819 -40.36311 -39.09390 -38.98260 -36.32180 -34.93940 -34.64763 -33.26559 -32.27793 -30.92186 -30.16118 -27.66196 -27.25824 -26.42763 -26.15107 -24.80778 -24.63866 -23.60751 -21.91503 -21.42550 -20.89013 -19.00048 -18.43836 -17.88991 -17.45848 -17.34027 -17.07645 -16.98077 -16.67011 -16.48939 -15.90769 -15.85764 -15.63587 -15.41715 -15.20525 -14.82556 -14.55077 -14.41849 -14.17792 -13.83460 -13.67247 -13.60830 -13.43407 -13.05670 -12.81301 -12.79972 -12.66532 -12.55210 -12.36885 -12.32498 -12.18196 -12.11385 -11.84549 -11.66966 -11.59337 -11.36674 -11.31236 -11.23670 -10.80851 -10.75819 -10.63520 -10.08413 -9.68680 -8.34644 -6.38274 0.51971 0.95611 1.22167 1.32446 1.40321 1.65840 2.25230 2.51625 2.65071 2.98224 3.04504 3.24145 3.50418 3.70694 3.75418 3.80712 3.91305 3.95071 4.03047 4.08907 4.14797 4.24908 4.30302 4.37227 4.39109 4.47184 4.47729 4.49054 4.51959 4.58590 4.60054 4.66950 4.73242 4.80424 4.84525 4.85502 4.88169 4.95213 5.01459 5.03752 5.12669 5.16833 5.18412 5.39481 5.41049 5.51888 5.76051 6.00746 6.09924 6.17937 6.50010 6.66679 7.25598 7.62176 8.80348 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.003773 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.560235 B = 7420.325648 C = 8251.532948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.055 3.945 4 C 0.110 3.890 5 N -0.454 5.454 6 C 0.183 3.817 7 C 0.192 3.808 8 H 0.103 0.897 9 C -0.142 4.142 10 C -0.114 4.114 11 C -0.156 4.156 12 C 0.053 3.947 13 O -0.393 6.393 14 N -0.300 5.300 15 N -0.354 5.354 16 C 0.368 3.632 17 N -0.458 5.458 18 C 0.055 3.945 19 C 0.204 3.796 20 H -0.003 1.003 21 C -0.133 4.133 22 C -0.508 4.508 23 H 0.063 0.937 24 C 0.033 3.967 25 N -0.932 5.932 26 Si 0.928 3.072 27 H -0.261 1.261 28 H -0.291 1.291 29 H -0.268 1.268 30 H 0.107 0.893 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.031 0.969 49 H 0.066 0.934 50 H 0.042 0.958 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 -7.981 -26.511 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.022 4.022 4 C -0.012 4.012 5 N -0.149 5.149 6 C -0.085 4.085 7 C 0.132 3.868 8 H 0.120 0.880 9 C -0.181 4.181 10 C -0.152 4.152 11 C -0.194 4.194 12 C -0.022 4.022 13 O -0.311 6.311 14 N -0.140 5.140 15 N -0.197 5.197 16 C 0.011 3.989 17 N -0.184 5.184 18 C -0.092 4.092 19 C 0.097 3.903 20 H 0.014 0.986 21 C -0.191 4.191 22 C -0.547 4.547 23 H 0.081 0.919 24 C -0.167 4.167 25 N -0.572 5.572 26 Si 0.756 3.244 27 H -0.187 1.187 28 H -0.218 1.218 29 H -0.193 1.193 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.351 -7.123 -26.230 27.527 hybrid contribution -0.748 0.685 0.758 1.267 sum -5.099 -6.438 -25.472 26.763 Atomic orbital electron populations 1.22994 0.78728 1.04425 1.00858 1.87761 1.21925 1.26180 1.95617 1.22642 0.92281 0.85925 1.01402 1.21789 0.92808 0.79078 1.07516 1.46216 1.46641 1.16610 1.05460 1.24788 1.02825 0.88858 0.92069 1.20118 0.87458 0.99519 0.79752 0.87985 1.22181 0.96295 1.00664 0.98958 1.21609 0.98469 1.03319 0.91788 1.22217 0.94955 1.00939 1.01246 1.22929 1.00125 0.99761 0.79415 1.88023 1.37864 1.85228 1.20026 1.73932 1.17179 1.20090 1.02818 1.74684 1.22364 1.18568 1.04091 1.22660 0.98119 0.88581 0.89505 1.58927 1.19885 1.44781 0.94786 1.22226 0.85572 1.00167 1.01263 1.19533 0.90823 0.88614 0.91305 0.98554 1.22023 0.98149 1.01119 0.97787 1.20997 1.36883 1.06761 0.90015 0.91888 1.25450 0.96225 1.00318 0.94671 1.69957 1.45536 1.39801 1.01900 0.86162 0.79931 0.80902 0.77364 1.18682 1.21814 1.19278 0.87423 0.94374 0.92216 0.94021 0.91174 0.85174 0.87371 0.90236 0.92292 0.89870 0.89504 0.92202 0.88097 0.87546 0.90880 0.89587 0.90751 0.95752 0.95048 0.91529 0.93919 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.48 10.70 -148.98 -1.59 -10.07 16 3 C 0.06 1.24 6.26 71.98 0.45 1.69 16 4 C 0.11 2.58 6.27 86.38 0.54 3.12 16 5 N -0.45 -14.18 2.81 -514.84 -1.45 -15.63 16 6 C 0.18 5.74 6.95 137.64 0.96 6.70 16 7 C 0.19 4.15 3.06 29.88 0.09 4.24 16 8 H 0.10 1.58 7.08 -2.39 -0.02 1.56 16 9 C -0.14 -2.59 5.40 30.68 0.17 -2.42 16 10 C -0.11 -1.26 6.03 30.72 0.19 -1.08 16 11 C -0.16 -1.74 6.14 30.69 0.19 -1.55 16 12 C 0.05 0.73 6.84 72.01 0.49 1.22 16 13 O -0.39 -9.30 10.39 -148.98 -1.55 -10.85 16 14 N -0.30 -12.12 12.18 -49.54 -0.60 -12.72 16 15 N -0.35 -15.75 12.01 -58.00 -0.70 -16.45 16 16 C 0.37 14.66 5.05 260.11 1.31 15.97 16 17 N -0.46 -19.39 4.63 -710.99 -3.29 -22.69 16 18 C 0.05 2.18 9.10 127.69 1.16 3.34 16 19 C 0.20 9.96 1.54 44.17 0.07 10.03 16 20 H 0.00 -0.17 7.08 -2.38 -0.02 -0.19 16 21 C -0.13 -5.95 8.55 71.98 0.62 -5.33 16 22 C -0.51 -28.09 8.57 25.60 0.22 -27.87 16 23 H 0.06 3.73 6.66 -2.91 -0.02 3.71 16 24 C 0.03 1.87 5.45 84.66 0.46 2.33 16 25 N -0.93 -56.24 13.96 21.45 0.30 -55.94 16 26 Si 0.93 45.37 24.37 68.60 1.67 47.04 16 27 H -0.26 -11.95 6.87 99.48 0.68 -11.27 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.27 -13.19 6.53 99.48 0.65 -12.54 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.17 7.55 -2.38 -0.02 1.15 16 34 H 0.07 1.28 7.54 -2.39 -0.02 1.27 16 35 H 0.13 2.14 7.31 -2.39 -0.02 2.12 16 36 H 0.11 2.79 8.11 -2.39 -0.02 2.77 16 37 H 0.08 1.32 7.54 -2.39 -0.02 1.30 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 3.54 6.47 -2.39 -0.02 3.53 16 46 H 0.07 2.50 8.06 -2.38 -0.02 2.48 16 47 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 48 H 0.03 1.32 7.22 -2.39 -0.02 1.30 16 49 H 0.07 2.82 7.55 -2.39 -0.02 2.80 16 50 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 51 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.22 397.05 1.79 -72.43 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.83 Total: 12.82 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 8.16 Total: 12.04 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.74 Total: -123.42 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -3.14 Total: -20.92 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -74.22 1.79 -72.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454948576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.894 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds