Wall clock time and date at job start Tue Mar 31 2020 20:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99741 * 2 1 4 4 H 1.09001 * 109.46883 * 330.00002 * 3 2 1 5 5 C 1.52991 * 109.47141 * 90.00291 * 3 2 1 6 6 C 1.53004 * 109.46881 * 210.00231 * 3 2 1 7 7 N 1.46505 * 109.47215 * 63.31300 * 6 3 2 8 8 C 1.36739 * 127.13588 * 264.57614 * 7 6 3 9 9 C 1.50704 * 126.34734 * 0.02562 * 8 7 6 10 10 H 1.09001 * 110.32888 * 342.74727 * 9 8 7 11 11 C 1.54474 * 110.37211 * 104.99754 * 9 8 7 12 12 C 1.54515 * 104.06202 * 142.80748 * 11 9 8 13 13 C 1.54474 * 104.05916 * 0.02562 * 12 11 9 14 14 O 1.44421 * 110.37021 * 220.38135 * 9 8 7 15 15 N 1.30293 * 107.30304 * 180.27968 * 8 7 6 16 16 N 1.28529 * 110.05389 * 359.56308 * 15 8 7 17 17 C 1.31213 * 109.85802 * 0.44654 * 16 15 8 18 18 N 1.38585 * 126.47014 * 179.69571 * 17 16 15 19 19 C 1.46904 * 110.99830 * 250.07665 * 18 17 16 20 20 C 1.46897 * 111.00193 * 14.02643 * 18 17 16 21 21 H 1.08998 * 109.46869 * 54.99701 * 20 18 17 22 22 C 1.53004 * 109.47078 * 295.00312 * 20 18 17 23 23 C 1.50694 * 109.47235 * 175.00106 * 20 18 17 24 24 H 1.08002 * 120.00001 * 359.97438 * 23 20 18 25 25 C 1.37884 * 120.00185 * 180.02562 * 23 20 18 26 26 N 1.31513 * 119.99884 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 120.00212 * 180.02562 * 25 23 20 28 28 H 1.48496 * 109.47257 * 89.99601 * 27 25 23 29 29 H 1.48497 * 109.46736 * 209.99770 * 27 25 23 30 30 H 1.48502 * 109.47003 * 329.99544 * 27 25 23 31 31 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47359 * 299.99457 * 1 2 3 33 33 H 1.09001 * 109.47443 * 60.00084 * 1 2 3 34 34 H 1.08998 * 109.47471 * 59.99541 * 5 3 2 35 35 H 1.08996 * 109.47335 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47335 * 299.99829 * 5 3 2 37 37 H 1.09001 * 109.47160 * 303.31145 * 6 3 2 38 38 H 1.08997 * 109.46793 * 183.31128 * 6 3 2 39 39 H 1.09004 * 110.51578 * 24.16532 * 11 9 8 40 40 H 1.08995 * 110.51415 * 261.45347 * 11 9 8 41 41 H 1.09005 * 110.50873 * 118.64182 * 12 11 9 42 42 H 1.08999 * 110.51089 * 241.35307 * 12 11 9 43 43 H 1.09003 * 110.37431 * 94.85342 * 13 12 11 44 44 H 1.09002 * 110.37036 * 217.18162 * 13 12 11 45 45 H 1.08993 * 109.47479 * 53.18332 * 19 18 17 46 46 H 1.09002 * 109.46938 * 173.19054 * 19 18 17 47 47 H 1.09005 * 109.46792 * 293.18604 * 19 18 17 48 48 H 1.08992 * 109.47109 * 59.99649 * 22 20 18 49 49 H 1.09004 * 109.47052 * 179.97438 * 22 20 18 50 50 H 1.08998 * 109.46772 * 299.99449 * 22 20 18 51 51 H 0.96997 * 119.99987 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2633 -0.7213 7 7 3.1513 0.8937 -2.1237 8 6 3.2424 -0.3565 -2.6701 9 6 3.5783 -1.6295 -1.9367 10 1 4.0365 -1.4023 -0.9741 11 6 2.3088 -2.4871 -1.7388 12 6 2.8051 -3.9393 -1.9182 13 6 4.3158 -3.7872 -2.2025 14 8 4.4585 -2.4515 -2.7336 15 7 2.9903 -0.2423 -3.9433 16 7 2.7390 0.9841 -4.2345 17 6 2.8274 1.7256 -3.1556 18 7 2.6299 3.0951 -3.0789 19 6 3.8960 3.7962 -2.8268 20 6 1.9804 3.6024 -4.2949 21 1 1.0548 3.0535 -4.4683 22 6 2.9169 3.4133 -5.4900 23 6 1.6715 5.0675 -4.1256 24 1 1.9312 5.5715 -3.2063 25 6 1.0562 5.7646 -5.1438 26 7 0.7394 5.1508 -6.2629 27 14 0.6739 7.5810 -4.9341 28 1 1.8251 8.3876 -5.4127 29 1 -0.5352 7.9267 -5.7240 30 1 0.4276 7.8726 -3.4990 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8829 1.0775 1.9563 35 1 2.6614 2.7669 1.4424 36 1 1.2568 1.8014 1.9563 37 1 4.0039 0.5263 -0.2429 38 1 3.8290 2.2453 -0.6702 39 1 1.5614 -2.2430 -2.4938 40 1 1.9028 -2.3432 -0.7376 41 1 2.6445 -4.5133 -1.0055 42 1 2.3031 -4.4131 -2.7618 43 1 4.8880 -3.8928 -1.2807 44 1 4.6397 -4.5240 -2.9375 45 1 4.6330 3.4943 -3.5709 46 1 3.7345 4.8723 -2.8912 47 1 4.2599 3.5424 -1.8311 48 1 3.1403 2.3536 -5.6125 49 1 2.4347 3.7893 -6.3924 50 1 3.8424 3.9622 -5.3166 51 1 0.3069 5.6413 -6.9794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460561715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:02 Heat of formation + Delta-G solvation = 14.439493 kcal Electronic energy + Delta-G solvation = -32125.768924 eV Core-core repulsion = 28063.037038 eV Total energy + Delta-G solvation = -4062.731886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.49771 -39.28033 -38.49386 -37.23787 -34.87556 -32.83161 -32.18709 -31.72070 -30.78913 -28.72409 -27.95721 -27.11170 -26.44548 -25.13857 -25.11529 -23.54185 -22.03148 -21.53094 -21.37401 -20.16758 -19.40496 -17.26194 -16.82603 -16.35497 -16.23990 -16.07869 -15.81811 -15.50997 -15.08812 -14.96023 -14.69906 -14.50567 -13.98840 -13.73605 -13.39734 -13.24364 -13.15181 -12.87419 -12.55189 -12.44366 -12.34860 -11.83751 -11.73402 -11.66159 -11.50926 -11.42558 -11.32515 -11.14814 -11.01297 -10.92431 -10.77492 -10.69861 -10.33003 -10.16701 -10.08547 -9.99264 -9.90687 -9.68103 -9.49571 -8.84243 -8.73950 -8.40081 -7.41632 -6.03052 -4.10681 2.20314 2.57591 3.27844 3.34819 3.36756 3.40049 3.54068 3.97161 4.32304 4.37414 4.56802 4.60141 4.64937 4.72939 4.83774 4.89488 4.94993 5.01868 5.09343 5.21425 5.24703 5.26074 5.28382 5.37324 5.45535 5.48519 5.60818 5.62514 5.64822 5.71975 5.74040 5.87280 5.94976 5.96156 6.06266 6.10704 6.23815 6.36637 6.52097 6.76324 6.85785 7.00193 7.03503 7.18678 7.35788 7.53299 7.69418 7.75341 7.98290 8.32818 8.48469 8.91122 9.43204 9.53898 11.02978 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003701 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.703674 B = 7563.011682 C = 8559.912412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.169 4.169 6 C 0.115 3.885 7 N -0.475 5.475 8 C 0.163 3.837 9 C 0.182 3.818 10 H 0.078 0.922 11 C -0.134 4.134 12 C -0.154 4.154 13 C 0.044 3.956 14 O -0.355 6.355 15 N -0.267 5.267 16 N -0.312 5.312 17 C 0.381 3.619 18 N -0.457 5.457 19 C 0.035 3.965 20 C 0.231 3.769 21 H 0.048 0.952 22 C -0.179 4.179 23 C -0.514 4.514 24 H 0.063 0.937 25 C 0.064 3.936 26 N -0.883 5.883 27 Si 0.898 3.102 28 H -0.281 1.281 29 H -0.286 1.286 30 H -0.274 1.274 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.032 0.968 46 H 0.098 0.902 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.087 0.913 50 H 0.019 0.981 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -13.304 17.069 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.010 3.990 4 H 0.099 0.901 5 C -0.227 4.227 6 C -0.008 4.008 7 N -0.172 5.172 8 C -0.104 4.104 9 C 0.121 3.879 10 H 0.096 0.904 11 C -0.173 4.173 12 C -0.192 4.192 13 C -0.033 4.033 14 O -0.272 6.272 15 N -0.107 5.107 16 N -0.156 5.156 17 C 0.026 3.974 18 N -0.181 5.181 19 C -0.112 4.112 20 C 0.126 3.874 21 H 0.065 0.935 22 C -0.238 4.238 23 C -0.553 4.553 24 H 0.081 0.919 25 C -0.139 4.139 26 N -0.521 5.521 27 Si 0.726 3.274 28 H -0.207 1.207 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.051 0.949 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.038 0.962 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.070 -13.623 15.637 21.135 hybrid contribution 0.016 1.530 1.039 1.850 sum 4.086 -12.093 16.676 21.001 Atomic orbital electron populations 1.22752 0.80771 1.02503 1.00247 1.87840 1.19957 1.27096 1.95111 1.22506 0.94706 0.85974 0.95787 0.90094 1.22185 1.02861 1.01898 0.95736 1.22032 0.97356 1.03342 0.78097 1.46011 1.55400 1.06958 1.08802 1.23710 1.08377 0.86255 0.92086 1.20684 0.90580 0.85539 0.91054 0.90391 1.22885 0.97605 0.93105 1.03718 1.22952 0.96351 0.97310 1.02561 1.23418 0.95597 0.85210 0.99058 1.89266 1.63399 1.18078 1.56490 1.74004 1.14564 1.12193 1.09945 1.74929 1.23124 0.97092 1.20412 1.23235 0.98552 0.92438 0.83176 1.59374 1.21906 0.94241 1.42628 1.22378 0.89024 1.01488 0.98349 1.19339 0.92585 0.94870 0.80564 0.93450 1.22543 0.98276 0.99757 1.03225 1.21021 1.39898 0.93163 1.01233 0.91866 1.24893 0.95501 0.98383 0.95078 1.69927 1.40888 1.36061 1.05192 0.86504 0.77860 0.84957 0.78088 1.20697 1.21208 1.19906 0.89797 0.94129 0.93704 0.91730 0.91028 0.91796 0.88777 0.87344 0.90102 0.89457 0.90594 0.90430 0.92331 0.88855 0.94900 0.88367 0.93708 0.92883 0.89432 0.96165 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.38 -4.46 9.23 -35.23 -0.33 -4.79 16 3 C 0.07 0.80 2.97 -26.73 -0.08 0.72 16 4 H 0.08 1.15 7.79 -51.93 -0.40 0.74 16 5 C -0.17 -1.43 9.53 37.15 0.35 -1.08 16 6 C 0.12 1.42 5.69 -4.04 -0.02 1.40 16 7 N -0.47 -8.07 2.73 -114.08 -0.31 -8.38 16 8 C 0.16 2.92 6.91 -154.01 -1.06 1.85 16 9 C 0.18 2.52 3.67 -27.11 -0.10 2.42 16 10 H 0.08 0.92 6.94 -51.93 -0.36 0.56 16 11 C -0.13 -1.58 6.47 -25.16 -0.16 -1.74 16 12 C -0.15 -1.42 7.09 -25.16 -0.18 -1.60 16 13 C 0.04 0.44 7.63 37.93 0.29 0.73 16 14 O -0.35 -5.28 11.33 -35.23 -0.40 -5.68 16 15 N -0.27 -5.87 12.17 32.99 0.40 -5.47 16 16 N -0.31 -7.39 8.97 30.31 0.27 -7.12 16 17 C 0.38 8.01 6.66 -318.88 -2.12 5.89 16 18 N -0.46 -9.79 4.77 -176.08 -0.84 -10.63 16 19 C 0.03 0.65 8.55 60.07 0.51 1.16 16 20 C 0.23 5.91 2.08 -68.87 -0.14 5.76 16 21 H 0.05 1.39 8.11 -51.93 -0.42 0.97 16 22 C -0.18 -4.62 8.28 37.16 0.31 -4.32 16 23 C -0.51 -13.63 7.78 -34.44 -0.27 -13.90 16 24 H 0.06 1.62 6.83 -52.49 -0.36 1.26 16 25 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 26 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 27 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 30 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.09 0.95 6.96 -51.93 -0.36 0.58 16 38 H 0.11 1.23 5.84 -51.93 -0.30 0.93 16 39 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 40 H 0.09 0.90 7.25 -51.93 -0.38 0.53 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.63 6.87 -51.93 -0.36 0.28 16 46 H 0.10 1.87 6.27 -51.93 -0.33 1.55 16 47 H 0.04 0.66 5.91 -51.93 -0.31 0.35 16 48 H 0.05 1.38 5.41 -51.93 -0.28 1.10 16 49 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 50 H 0.02 0.49 6.63 -51.93 -0.34 0.14 16 51 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -32.85 394.68 -9.58 -42.43 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.26 Total: 2.13 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.68 Total: 0.39 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.15 Total: -56.20 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.72 Total: -10.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.85 -9.58 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460561715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.873 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds