Wall clock time and date at job start Tue Mar 31 2020 20:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99741 * 2 1 4 4 H 1.09001 * 109.46883 * 330.00002 * 3 2 1 5 5 C 1.52991 * 109.47141 * 90.00291 * 3 2 1 6 6 C 1.53004 * 109.46881 * 210.00231 * 3 2 1 7 7 N 1.46505 * 109.47215 * 63.31300 * 6 3 2 8 8 C 1.36739 * 127.13588 * 264.57614 * 7 6 3 9 9 C 1.50704 * 126.34734 * 0.02562 * 8 7 6 10 10 H 1.09001 * 110.32888 * 342.74727 * 9 8 7 11 11 C 1.54474 * 110.37211 * 104.99754 * 9 8 7 12 12 C 1.54515 * 104.06202 * 142.80748 * 11 9 8 13 13 C 1.54474 * 104.05916 * 0.02562 * 12 11 9 14 14 O 1.44421 * 110.37021 * 220.38135 * 9 8 7 15 15 N 1.30293 * 107.30304 * 180.27968 * 8 7 6 16 16 N 1.28529 * 110.05389 * 359.56308 * 15 8 7 17 17 C 1.31213 * 109.85802 * 0.44654 * 16 15 8 18 18 N 1.38585 * 126.47014 * 179.69571 * 17 16 15 19 19 C 1.46904 * 110.99830 * 250.07665 * 18 17 16 20 20 C 1.46897 * 111.00193 * 14.02643 * 18 17 16 21 21 H 1.08998 * 109.46869 * 54.99701 * 20 18 17 22 22 C 1.53004 * 109.47078 * 295.00312 * 20 18 17 23 23 C 1.50694 * 109.47235 * 175.00106 * 20 18 17 24 24 H 1.08002 * 120.00001 * 359.97438 * 23 20 18 25 25 C 1.37884 * 120.00185 * 180.02562 * 23 20 18 26 26 N 1.31513 * 119.99884 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 120.00212 * 180.02562 * 25 23 20 28 28 H 1.48496 * 109.47257 * 89.99601 * 27 25 23 29 29 H 1.48497 * 109.46736 * 209.99770 * 27 25 23 30 30 H 1.48502 * 109.47003 * 329.99544 * 27 25 23 31 31 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47359 * 299.99457 * 1 2 3 33 33 H 1.09001 * 109.47443 * 60.00084 * 1 2 3 34 34 H 1.08998 * 109.47471 * 59.99541 * 5 3 2 35 35 H 1.08996 * 109.47335 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47335 * 299.99829 * 5 3 2 37 37 H 1.09001 * 109.47160 * 303.31145 * 6 3 2 38 38 H 1.08997 * 109.46793 * 183.31128 * 6 3 2 39 39 H 1.09004 * 110.51578 * 24.16532 * 11 9 8 40 40 H 1.08995 * 110.51415 * 261.45347 * 11 9 8 41 41 H 1.09005 * 110.50873 * 118.64182 * 12 11 9 42 42 H 1.08999 * 110.51089 * 241.35307 * 12 11 9 43 43 H 1.09003 * 110.37431 * 94.85342 * 13 12 11 44 44 H 1.09002 * 110.37036 * 217.18162 * 13 12 11 45 45 H 1.08993 * 109.47479 * 53.18332 * 19 18 17 46 46 H 1.09002 * 109.46938 * 173.19054 * 19 18 17 47 47 H 1.09005 * 109.46792 * 293.18604 * 19 18 17 48 48 H 1.08992 * 109.47109 * 59.99649 * 22 20 18 49 49 H 1.09004 * 109.47052 * 179.97438 * 22 20 18 50 50 H 1.08998 * 109.46772 * 299.99449 * 22 20 18 51 51 H 0.96997 * 119.99987 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2633 -0.7213 7 7 3.1513 0.8937 -2.1237 8 6 3.2424 -0.3565 -2.6701 9 6 3.5783 -1.6295 -1.9367 10 1 4.0365 -1.4023 -0.9741 11 6 2.3088 -2.4871 -1.7388 12 6 2.8051 -3.9393 -1.9182 13 6 4.3158 -3.7872 -2.2025 14 8 4.4585 -2.4515 -2.7336 15 7 2.9903 -0.2423 -3.9433 16 7 2.7390 0.9841 -4.2345 17 6 2.8274 1.7256 -3.1556 18 7 2.6299 3.0951 -3.0789 19 6 3.8960 3.7962 -2.8268 20 6 1.9804 3.6024 -4.2949 21 1 1.0548 3.0535 -4.4683 22 6 2.9169 3.4133 -5.4900 23 6 1.6715 5.0675 -4.1256 24 1 1.9312 5.5715 -3.2063 25 6 1.0562 5.7646 -5.1438 26 7 0.7394 5.1508 -6.2629 27 14 0.6739 7.5810 -4.9341 28 1 1.8251 8.3876 -5.4127 29 1 -0.5352 7.9267 -5.7240 30 1 0.4276 7.8726 -3.4990 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.8829 1.0775 1.9563 35 1 2.6614 2.7669 1.4424 36 1 1.2568 1.8014 1.9563 37 1 4.0039 0.5263 -0.2429 38 1 3.8290 2.2453 -0.6702 39 1 1.5614 -2.2430 -2.4938 40 1 1.9028 -2.3432 -0.7376 41 1 2.6445 -4.5133 -1.0055 42 1 2.3031 -4.4131 -2.7618 43 1 4.8880 -3.8928 -1.2807 44 1 4.6397 -4.5240 -2.9375 45 1 4.6330 3.4943 -3.5709 46 1 3.7345 4.8723 -2.8912 47 1 4.2599 3.5424 -1.8311 48 1 3.1403 2.3536 -5.6125 49 1 2.4347 3.7893 -6.3924 50 1 3.8424 3.9622 -5.3166 51 1 0.3069 5.6413 -6.9794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460561715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:01 Heat of formation + Delta-G solvation = -6.315848 kcal Electronic energy + Delta-G solvation = -32126.668943 eV Core-core repulsion = 28063.037038 eV Total energy + Delta-G solvation = -4063.631905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.00127 -40.27822 -39.41912 -38.99855 -36.14343 -34.81427 -33.16730 -32.69664 -32.08809 -30.63824 -29.26662 -28.03605 -27.44979 -27.23279 -26.63186 -24.65985 -23.45959 -22.73340 -22.35383 -21.41421 -21.08535 -18.54921 -18.18493 -17.76999 -17.47155 -17.33141 -17.08969 -16.81595 -16.48953 -16.07395 -16.04036 -15.80264 -15.41941 -14.99839 -14.66192 -14.39035 -14.34299 -14.17453 -13.70228 -13.47380 -13.43056 -13.25967 -13.04743 -12.97066 -12.78799 -12.67743 -12.62680 -12.55224 -12.51238 -12.22109 -12.16955 -12.03196 -11.99606 -11.85926 -11.57966 -11.39790 -11.19671 -10.86412 -10.84306 -10.54006 -10.49476 -10.39963 -9.11967 -8.11422 -6.27024 0.77502 1.21910 1.45409 1.45990 1.56798 1.85632 2.41765 2.64990 2.90241 3.02968 3.18136 3.32905 3.62765 3.69654 3.77550 3.84426 3.99575 4.05389 4.11812 4.16048 4.20297 4.34910 4.40396 4.45888 4.46188 4.51292 4.57521 4.67036 4.70294 4.76094 4.85299 4.86100 4.89617 4.93701 4.99502 5.01571 5.02230 5.13744 5.14166 5.19676 5.28273 5.29707 5.43493 5.60744 5.63162 5.83186 5.86785 6.04997 6.11879 6.22418 6.59587 6.82768 7.41948 7.87371 8.95194 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003701 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.703674 B = 7563.011682 C = 8559.912412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.071 3.929 4 H 0.047 0.953 5 C -0.159 4.159 6 C 0.104 3.896 7 N -0.464 5.464 8 C 0.184 3.816 9 C 0.179 3.821 10 H 0.111 0.889 11 C -0.129 4.129 12 C -0.146 4.146 13 C 0.038 3.962 14 O -0.391 6.391 15 N -0.318 5.318 16 N -0.362 5.362 17 C 0.367 3.633 18 N -0.453 5.453 19 C 0.036 3.964 20 C 0.244 3.756 21 H -0.004 1.004 22 C -0.161 4.161 23 C -0.522 4.522 24 H 0.075 0.925 25 C 0.011 3.989 26 N -0.920 5.920 27 Si 0.970 3.030 28 H -0.274 1.274 29 H -0.289 1.289 30 H -0.261 1.261 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.046 0.954 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.019 0.981 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.026 0.974 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 -13.766 21.201 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.306 6.306 3 C 0.013 3.987 4 H 0.065 0.935 5 C -0.217 4.217 6 C -0.018 4.018 7 N -0.159 5.159 8 C -0.085 4.085 9 C 0.119 3.881 10 H 0.128 0.872 11 C -0.168 4.168 12 C -0.183 4.183 13 C -0.038 4.038 14 O -0.310 6.310 15 N -0.157 5.157 16 N -0.206 5.206 17 C 0.010 3.990 18 N -0.177 5.177 19 C -0.110 4.110 20 C 0.138 3.862 21 H 0.014 0.986 22 C -0.221 4.221 23 C -0.560 4.560 24 H 0.093 0.907 25 C -0.188 4.188 26 N -0.559 5.559 27 Si 0.795 3.205 28 H -0.199 1.199 29 H -0.215 1.215 30 H -0.185 1.185 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.038 0.962 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.367 -14.102 19.815 24.906 hybrid contribution -0.368 1.516 -0.194 1.572 sum 4.999 -12.586 19.621 23.841 Atomic orbital electron populations 1.22803 0.80298 1.03540 0.99549 1.87803 1.20417 1.27142 1.95212 1.22486 0.93453 0.85343 0.97456 0.93526 1.22123 1.03683 1.02747 0.93132 1.22550 0.98657 1.05141 0.75411 1.46162 1.54035 1.05845 1.09876 1.24610 1.04920 0.87725 0.91246 1.21054 0.91873 0.83912 0.91222 0.87189 1.22840 0.95905 0.94460 1.03584 1.22955 0.95615 0.95735 1.04042 1.23724 0.96422 0.83121 1.00512 1.89233 1.63629 1.20342 1.57758 1.73889 1.17421 1.11740 1.12674 1.74746 1.24692 0.98311 1.22839 1.23100 0.99526 0.92274 0.84138 1.59266 1.23353 0.94848 1.40210 1.22468 0.87335 1.00809 1.00427 1.18896 0.90851 0.94259 0.82213 0.98600 1.22333 0.98242 0.99162 1.02321 1.21314 1.39662 0.93450 1.01609 0.90722 1.25810 0.95237 1.03111 0.94637 1.70102 1.41738 1.37951 1.06122 0.85378 0.77492 0.79115 0.78553 1.19918 1.21478 1.18466 0.87950 0.92261 0.96949 0.89793 0.90114 0.91421 0.85394 0.86087 0.93508 0.87498 0.87198 0.91013 0.89448 0.88007 0.96181 0.88837 0.89292 0.93549 0.92302 0.95462 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.82 113.37 1.23 1.91 16 2 O -0.39 -8.24 9.23 -148.98 -1.38 -9.61 16 3 C 0.07 1.51 2.97 30.59 0.09 1.60 16 4 H 0.05 1.32 7.79 -2.39 -0.02 1.30 16 5 C -0.16 -2.12 9.53 71.98 0.69 -1.44 16 6 C 0.10 2.27 5.69 86.38 0.49 2.77 16 7 N -0.46 -15.56 2.73 -514.84 -1.41 -16.97 16 8 C 0.18 6.59 6.91 137.64 0.95 7.55 16 9 C 0.18 4.63 3.67 30.35 0.11 4.74 16 10 H 0.11 2.13 6.94 -2.39 -0.02 2.11 16 11 C -0.13 -2.80 6.47 31.61 0.20 -2.59 16 12 C -0.15 -2.28 7.09 31.61 0.22 -2.06 16 13 C 0.04 0.65 7.63 72.48 0.55 1.20 16 14 O -0.39 -11.09 11.33 -148.98 -1.69 -12.78 16 15 N -0.32 -14.67 12.17 -49.53 -0.60 -15.28 16 16 N -0.36 -18.24 8.97 -58.01 -0.52 -18.76 16 17 C 0.37 15.94 6.66 260.11 1.73 17.67 16 18 N -0.45 -19.89 4.77 -711.01 -3.39 -23.28 16 19 C 0.04 1.32 8.55 127.69 1.09 2.41 16 20 C 0.24 13.13 2.08 44.17 0.09 13.22 16 21 H 0.00 -0.25 8.11 -2.39 -0.02 -0.27 16 22 C -0.16 -8.83 8.28 71.98 0.60 -8.23 16 23 C -0.52 -28.23 7.78 25.60 0.20 -28.04 16 24 H 0.07 3.79 6.83 -2.91 -0.02 3.77 16 25 C 0.01 0.62 5.30 84.66 0.45 1.07 16 26 N -0.92 -54.77 11.32 21.45 0.24 -54.53 16 27 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 30 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 0.95 7.87 -2.39 -0.02 0.93 16 33 H 0.01 0.31 8.08 -2.39 -0.02 0.29 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.88 7.87 -2.38 -0.02 0.86 16 37 H 0.13 1.98 6.96 -2.39 -0.02 1.96 16 38 H 0.12 2.35 5.84 -2.39 -0.01 2.33 16 39 H 0.05 1.34 7.87 -2.39 -0.02 1.32 16 40 H 0.11 1.87 7.25 -2.39 -0.02 1.85 16 41 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.02 0.76 6.87 -2.39 -0.02 0.75 16 46 H 0.09 3.48 6.27 -2.39 -0.01 3.47 16 47 H 0.09 2.40 5.91 -2.38 -0.01 2.39 16 48 H 0.05 2.58 5.41 -2.39 -0.01 2.57 16 49 H 0.06 3.54 6.07 -2.38 -0.01 3.52 16 50 H 0.03 1.38 6.63 -2.39 -0.02 1.37 16 51 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.06 394.68 2.91 -75.15 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.93 Total: 19.30 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 8.70 Total: 11.79 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.68 Total: -128.81 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -3.06 Total: -22.39 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -78.06 2.91 -75.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460561715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.833 kcal (2) G-P(sol) polarization free energy of solvation -78.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds