Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99636 * 2 1 4 4 C 1.52994 * 109.47360 * 89.99773 * 3 2 1 5 5 H 1.09002 * 112.74725 * 285.33312 * 4 3 2 6 6 C 1.53518 * 113.53032 * 154.51175 * 4 3 2 7 7 C 1.53518 * 83.57347 * 219.20266 * 6 4 3 8 8 N 1.47482 * 87.93406 * 26.02360 * 7 6 4 9 9 C 1.46900 * 110.99645 * 221.29972 * 8 7 6 10 10 C 1.50692 * 109.47092 * 285.96646 * 9 8 7 11 11 O 1.21300 * 120.00255 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00171 * 180.02562 * 10 9 8 13 13 C 1.37103 * 120.00154 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99991 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00127 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99712 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47140 * 59.99792 * 17 15 13 19 19 H 1.48501 * 109.47033 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47124 * 300.00055 * 17 15 13 21 21 C 1.34770 * 120.00267 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00240 * 180.02562 * 21 2 1 23 23 C 1.50703 * 119.99873 * 359.97438 * 21 2 1 24 24 H 1.09000 * 110.27665 * 300.70346 * 23 21 2 25 25 C 1.54602 * 110.30651 * 178.61372 * 23 21 2 26 26 C 1.55096 * 102.84529 * 219.18850 * 25 23 21 27 27 N 1.48533 * 103.28399 * 37.30428 * 26 25 23 28 28 C 1.46903 * 111.00132 * 200.33620 * 27 26 25 29 29 C 1.47901 * 105.82309 * 320.84675 * 27 26 25 30 30 H 1.08996 * 109.46836 * 90.00775 * 1 2 3 31 31 H 1.09002 * 109.46935 * 210.00313 * 1 2 3 32 32 H 1.09000 * 109.46926 * 329.99974 * 1 2 3 33 33 H 1.09005 * 109.46859 * 329.99697 * 3 2 1 34 34 H 1.09003 * 109.46700 * 210.00003 * 3 2 1 35 35 H 1.09005 * 114.16809 * 332.84436 * 6 4 3 36 36 H 1.08997 * 114.17359 * 105.55059 * 6 4 3 37 37 H 1.09004 * 113.47197 * 271.25569 * 7 6 4 38 38 H 1.08999 * 113.52743 * 140.80039 * 7 6 4 39 39 H 1.08992 * 109.47311 * 45.97169 * 9 8 7 40 40 H 1.08999 * 109.46597 * 165.97338 * 9 8 7 41 41 H 0.96994 * 120.00292 * 359.97438 * 12 10 9 42 42 H 0.96997 * 119.99674 * 179.97438 * 16 15 13 43 43 H 1.09005 * 110.72109 * 337.48560 * 25 23 21 44 44 H 1.08997 * 110.72427 * 100.77062 * 25 23 21 45 45 H 1.09010 * 110.59431 * 278.87638 * 26 25 23 46 46 H 1.08996 * 110.68775 * 155.78255 * 26 25 23 47 47 H 1.09001 * 109.47374 * 177.40315 * 28 27 26 48 48 H 1.09003 * 109.46985 * 297.39485 * 28 27 26 49 49 H 1.08997 * 109.47316 * 57.39898 * 28 27 26 50 50 H 1.08992 * 109.92048 * 265.97501 * 29 27 26 51 51 H 1.09004 * 109.91792 * 144.67935 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 1 1.5578 2.0999 1.9284 6 6 3.6780 2.6221 1.5967 7 6 3.9030 1.8128 2.8817 8 7 3.1672 0.7028 2.2479 9 6 2.2614 0.0564 3.2068 10 6 3.0634 -0.7798 4.1702 11 8 4.2710 -0.8318 4.0685 12 7 2.4391 -1.4700 5.1450 13 6 3.1689 -2.2304 6.0219 14 1 4.2441 -2.2759 5.9318 15 6 2.5251 -2.9424 7.0266 16 7 1.2168 -2.8865 7.1366 17 14 3.5194 -3.9789 8.2209 18 1 4.4756 -3.1101 8.9531 19 1 2.6037 -4.6329 9.1899 20 1 4.2695 -5.0172 7.4695 21 6 2.1390 -1.1671 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4722 0.0017 24 1 0.7448 -2.5378 0.8811 25 6 2.3725 -3.6617 -0.0330 26 6 1.6706 -4.6646 -0.9852 27 7 1.0559 -3.7862 -2.0132 28 6 -0.0314 -4.4799 -2.7165 29 6 0.5460 -2.6058 -1.2823 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6083 2.0284 -0.5139 34 1 3.1499 1.1385 -0.5139 35 1 4.4439 2.4729 0.8355 36 1 3.4355 3.6711 1.7666 37 1 3.3954 2.2295 3.7517 38 1 4.9513 1.5848 3.0744 39 1 1.7115 0.8190 3.7581 40 1 1.5590 -0.5813 2.6699 41 1 1.4735 -1.4282 5.2267 42 1 0.7674 -3.3838 7.8377 43 1 3.3351 -3.3523 -0.4405 44 1 2.4936 -4.0915 0.9613 45 1 0.9042 -5.2274 -0.4520 46 1 2.3977 -5.3378 -1.4393 47 1 -0.4941 -3.7994 -3.4313 48 1 0.3712 -5.3437 -3.2457 49 1 -0.7778 -4.8113 -1.9947 50 1 -0.5033 -2.7523 -1.0264 51 1 0.6601 -1.7117 -1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479266376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = -10.251217 kcal Electronic energy + Delta-G solvation = -31527.582752 eV Core-core repulsion = 27463.780197 eV Total energy + Delta-G solvation = -4063.802555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63748 -39.70918 -37.99903 -37.55413 -35.32623 -33.85464 -32.40352 -31.30169 -30.63593 -29.67713 -28.24685 -26.59571 -25.82705 -25.69319 -23.64053 -23.48321 -21.47493 -21.23171 -19.45743 -19.21667 -18.87104 -17.84971 -17.16633 -16.30086 -16.11242 -15.88996 -15.68724 -15.39442 -15.15635 -14.49931 -14.41334 -14.26695 -13.88229 -13.77185 -13.64500 -13.21519 -13.15146 -13.03741 -12.62102 -12.45465 -12.23387 -12.21017 -11.95687 -11.72819 -11.63699 -11.57709 -11.44235 -11.30301 -11.22732 -11.15578 -11.00580 -10.73680 -10.65957 -10.42185 -10.36071 -10.17099 -9.44810 -9.38582 -8.74641 -8.62770 -8.30271 -8.12152 -7.91377 -6.38146 -3.78298 2.95138 3.07888 3.22423 3.27091 3.32363 3.85156 3.96208 4.11597 4.30014 4.44894 4.50150 4.61475 4.78196 4.91446 4.94062 5.09153 5.09876 5.14979 5.15809 5.18698 5.26533 5.28965 5.34597 5.37211 5.40990 5.51192 5.54304 5.57430 5.61072 5.62544 5.73694 5.75180 5.82726 5.83095 5.91135 5.99774 6.07704 6.18260 6.33682 6.36646 6.40794 6.59419 6.69145 6.80464 6.82686 7.39215 7.54819 7.58541 8.10324 8.51756 8.66818 9.22779 9.58849 10.12255 10.79920 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.004096 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.500493 B = 6833.760495 C = 9063.963183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.139 3.861 4 C 0.001 3.999 5 H 0.071 0.929 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.415 5.415 9 C 0.016 3.984 10 C 0.447 3.553 11 O -0.571 6.571 12 N -0.568 5.568 13 C -0.295 4.295 14 H 0.101 0.899 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.526 3.474 22 O -0.496 6.496 23 C -0.121 4.121 24 H 0.098 0.902 25 C -0.109 4.109 26 C 0.034 3.966 27 N -0.522 5.522 28 C 0.016 3.984 29 C 0.049 3.951 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.390 0.610 42 H 0.271 0.729 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.028 0.972 50 H 0.051 0.949 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 5.731 -17.418 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.355 5.355 3 C 0.015 3.985 4 C -0.110 4.110 5 H 0.089 0.911 6 C -0.176 4.176 7 C -0.119 4.119 8 N -0.137 5.137 9 C -0.117 4.117 10 C 0.232 3.768 11 O -0.453 6.453 12 N -0.206 5.206 13 C -0.425 4.425 14 H 0.119 0.881 15 C -0.179 4.179 16 N -0.547 5.547 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.313 3.687 22 O -0.367 6.367 23 C -0.143 4.143 24 H 0.116 0.884 25 C -0.147 4.147 26 C -0.094 4.094 27 N -0.246 5.246 28 C -0.133 4.133 29 C -0.079 4.079 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.222 0.778 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.069 0.931 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.467 5.137 -18.059 19.858 hybrid contribution -1.790 -0.205 2.005 2.695 sum -8.257 4.933 -16.054 18.715 Atomic orbital electron populations 1.21814 0.80347 1.03060 1.01324 1.47666 1.06193 1.06068 1.75575 1.21384 0.97777 0.84226 0.95076 1.23919 0.96698 0.93826 0.96587 0.91074 1.23178 0.97584 0.97504 0.99289 1.23581 1.02137 0.91018 0.95143 1.68956 1.14809 1.16059 1.13883 1.22420 0.95752 0.98643 0.94852 1.19684 0.88624 0.84706 0.83742 1.90541 1.14092 1.66785 1.73928 1.41847 1.09507 1.42218 1.27026 1.19642 0.93321 1.22352 1.07187 0.88092 1.25216 0.95805 0.98404 0.98492 1.69603 1.07534 1.43143 1.34455 0.85946 0.78984 0.79820 0.79653 1.19962 1.21013 1.19898 1.20141 0.88038 0.84469 0.76079 1.90745 1.13397 1.86388 1.46218 1.22181 0.98439 0.94543 0.99099 0.88393 1.22496 0.99326 0.92801 1.00089 1.23337 0.98219 0.95580 0.92248 1.64753 1.27893 1.06528 1.25433 1.22519 0.92990 0.99191 0.98589 1.22879 0.96468 0.95283 0.93308 0.92810 0.91265 0.91334 0.90788 0.89294 0.88832 0.91049 0.92164 0.89217 0.93453 0.90260 0.77755 0.91969 0.88627 0.90119 0.93570 0.89677 0.91448 0.91201 0.95341 0.93093 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.08 59.85 0.54 1.19 16 2 N -0.62 -7.48 2.73 -181.56 -0.50 -7.98 16 3 C 0.14 1.61 5.57 -4.04 -0.02 1.59 16 4 C 0.00 0.01 3.36 -71.43 -0.24 -0.23 16 5 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 6 C -0.14 -1.68 8.00 -26.19 -0.21 -1.89 16 7 C 0.01 0.17 6.71 -7.54 -0.05 0.12 16 8 N -0.41 -7.42 4.69 -237.92 -1.12 -8.54 16 9 C 0.02 0.30 5.31 -4.98 -0.03 0.27 16 10 C 0.45 11.14 7.62 -10.99 -0.08 11.05 16 11 O -0.57 -16.41 15.34 5.54 0.08 -16.32 16 12 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 13 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 14 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.91 -24.87 13.05 55.50 0.72 -24.15 16 17 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 C 0.53 8.08 5.90 -10.99 -0.06 8.01 16 22 O -0.50 -9.88 14.43 5.56 0.08 -9.80 16 23 C -0.12 -1.59 2.47 -90.41 -0.22 -1.81 16 24 H 0.10 1.24 7.39 -51.93 -0.38 0.86 16 25 C -0.11 -1.56 6.42 -24.78 -0.16 -1.72 16 26 C 0.03 0.39 6.56 -1.81 -0.01 0.38 16 27 N -0.52 -5.90 5.55 -238.61 -1.33 -7.23 16 28 C 0.02 0.14 9.40 60.07 0.56 0.70 16 29 C 0.05 0.52 4.95 -2.76 -0.01 0.50 16 30 H 0.05 0.35 7.54 -51.93 -0.39 -0.04 16 31 H 0.07 0.56 6.22 -51.93 -0.32 0.24 16 32 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.09 1.22 7.18 -51.93 -0.37 0.85 16 35 H 0.09 1.16 7.95 -51.93 -0.41 0.74 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 38 H 0.09 1.69 8.13 -51.93 -0.42 1.27 16 39 H 0.05 0.82 7.56 -51.93 -0.39 0.42 16 40 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 41 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 1.59 6.89 -51.93 -0.36 1.23 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.50 7.96 -51.92 -0.41 0.08 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.03 0.23 8.00 -51.93 -0.42 -0.19 16 50 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 51 H 0.08 0.87 6.74 -51.93 -0.35 0.52 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -35.30 401.09 -9.94 -45.24 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.62 Total: 11.10 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -0.24 Total: 10.08 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -2.27 Total: -62.81 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.17 Total: -26.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.30 -9.94 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479266376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.992 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds