Wall clock time and date at job start Tue Mar 31 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99636 * 2 1 4 4 C 1.52994 * 109.47360 * 89.99773 * 3 2 1 5 5 H 1.09002 * 112.74725 * 285.33312 * 4 3 2 6 6 C 1.53518 * 113.53032 * 154.51175 * 4 3 2 7 7 C 1.53518 * 83.57347 * 219.20266 * 6 4 3 8 8 N 1.47482 * 87.93406 * 26.02360 * 7 6 4 9 9 C 1.46900 * 110.99645 * 221.29972 * 8 7 6 10 10 C 1.50692 * 109.47092 * 285.96646 * 9 8 7 11 11 O 1.21300 * 120.00255 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00171 * 180.02562 * 10 9 8 13 13 C 1.37103 * 120.00154 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99991 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00127 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99712 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47140 * 59.99792 * 17 15 13 19 19 H 1.48501 * 109.47033 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47124 * 300.00055 * 17 15 13 21 21 C 1.34770 * 120.00267 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00240 * 180.02562 * 21 2 1 23 23 C 1.50703 * 119.99873 * 359.97438 * 21 2 1 24 24 H 1.09000 * 110.27665 * 300.70346 * 23 21 2 25 25 C 1.54602 * 110.30651 * 178.61372 * 23 21 2 26 26 C 1.55096 * 102.84529 * 219.18850 * 25 23 21 27 27 N 1.48533 * 103.28399 * 37.30428 * 26 25 23 28 28 C 1.46903 * 111.00132 * 200.33620 * 27 26 25 29 29 C 1.47901 * 105.82309 * 320.84675 * 27 26 25 30 30 H 1.08996 * 109.46836 * 90.00775 * 1 2 3 31 31 H 1.09002 * 109.46935 * 210.00313 * 1 2 3 32 32 H 1.09000 * 109.46926 * 329.99974 * 1 2 3 33 33 H 1.09005 * 109.46859 * 329.99697 * 3 2 1 34 34 H 1.09003 * 109.46700 * 210.00003 * 3 2 1 35 35 H 1.09005 * 114.16809 * 332.84436 * 6 4 3 36 36 H 1.08997 * 114.17359 * 105.55059 * 6 4 3 37 37 H 1.09004 * 113.47197 * 271.25569 * 7 6 4 38 38 H 1.08999 * 113.52743 * 140.80039 * 7 6 4 39 39 H 1.08992 * 109.47311 * 45.97169 * 9 8 7 40 40 H 1.08999 * 109.46597 * 165.97338 * 9 8 7 41 41 H 0.96994 * 120.00292 * 359.97438 * 12 10 9 42 42 H 0.96997 * 119.99674 * 179.97438 * 16 15 13 43 43 H 1.09005 * 110.72109 * 337.48560 * 25 23 21 44 44 H 1.08997 * 110.72427 * 100.77062 * 25 23 21 45 45 H 1.09010 * 110.59431 * 278.87638 * 26 25 23 46 46 H 1.08996 * 110.68775 * 155.78255 * 26 25 23 47 47 H 1.09001 * 109.47374 * 177.40315 * 28 27 26 48 48 H 1.09003 * 109.46985 * 297.39485 * 28 27 26 49 49 H 1.08997 * 109.47316 * 57.39898 * 28 27 26 50 50 H 1.08992 * 109.92048 * 265.97501 * 29 27 26 51 51 H 1.09004 * 109.91792 * 144.67935 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 1.4424 5 1 1.5578 2.0999 1.9284 6 6 3.6780 2.6221 1.5967 7 6 3.9030 1.8128 2.8817 8 7 3.1672 0.7028 2.2479 9 6 2.2614 0.0564 3.2068 10 6 3.0634 -0.7798 4.1702 11 8 4.2710 -0.8318 4.0685 12 7 2.4391 -1.4700 5.1450 13 6 3.1689 -2.2304 6.0219 14 1 4.2441 -2.2759 5.9318 15 6 2.5251 -2.9424 7.0266 16 7 1.2168 -2.8865 7.1366 17 14 3.5194 -3.9789 8.2209 18 1 4.4756 -3.1101 8.9531 19 1 2.6037 -4.6329 9.1899 20 1 4.2695 -5.0172 7.4695 21 6 2.1390 -1.1671 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4722 0.0017 24 1 0.7448 -2.5378 0.8811 25 6 2.3725 -3.6617 -0.0330 26 6 1.6706 -4.6646 -0.9852 27 7 1.0559 -3.7862 -2.0132 28 6 -0.0314 -4.4799 -2.7165 29 6 0.5460 -2.6058 -1.2823 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6083 2.0284 -0.5139 34 1 3.1499 1.1385 -0.5139 35 1 4.4439 2.4729 0.8355 36 1 3.4355 3.6711 1.7666 37 1 3.3954 2.2295 3.7517 38 1 4.9513 1.5848 3.0744 39 1 1.7115 0.8190 3.7581 40 1 1.5590 -0.5813 2.6699 41 1 1.4735 -1.4282 5.2267 42 1 0.7674 -3.3838 7.8377 43 1 3.3351 -3.3523 -0.4405 44 1 2.4936 -4.0915 0.9613 45 1 0.9042 -5.2274 -0.4520 46 1 2.3977 -5.3378 -1.4393 47 1 -0.4941 -3.7994 -3.4313 48 1 0.3712 -5.3437 -3.2457 49 1 -0.7778 -4.8113 -1.9947 50 1 -0.5033 -2.7523 -1.0264 51 1 0.6601 -1.7117 -1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479266376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:40 Heat of formation + Delta-G solvation = -38.800130 kcal Electronic energy + Delta-G solvation = -31528.820725 eV Core-core repulsion = 27463.780197 eV Total energy + Delta-G solvation = -4065.040529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78821 -40.90856 -39.61505 -38.84996 -36.40317 -35.96332 -33.40585 -33.30697 -32.06134 -30.72996 -29.19192 -27.57378 -27.41288 -26.61456 -25.35501 -24.57335 -22.44556 -22.17845 -21.14754 -20.56222 -19.97975 -19.88162 -18.18512 -17.80546 -17.26214 -17.10969 -16.93860 -16.65673 -16.50228 -16.06308 -15.76886 -15.62105 -15.22596 -15.06106 -14.96152 -14.40160 -14.09272 -13.99386 -13.93101 -13.72347 -13.56161 -13.27016 -13.12120 -13.01978 -12.90362 -12.79010 -12.66350 -12.48488 -12.43694 -12.32392 -12.30882 -12.15845 -12.11519 -11.91670 -11.78111 -11.57745 -11.47280 -10.56922 -10.39181 -10.04486 -9.74668 -9.43189 -9.32824 -8.49697 -5.98308 1.35904 1.37525 1.48523 1.83683 2.01561 2.12597 2.26410 2.89408 3.02546 3.15979 3.31721 3.45279 3.56178 3.59558 3.82736 3.86679 4.13656 4.16703 4.22922 4.25119 4.26825 4.33281 4.36891 4.41997 4.45818 4.49893 4.52154 4.55527 4.61106 4.63306 4.76082 4.80720 4.85262 4.91229 4.94646 4.98642 5.02011 5.03338 5.04603 5.19194 5.26858 5.36658 5.45989 5.76778 5.82444 5.91926 6.05806 6.17834 6.54284 6.58003 7.09997 7.43062 7.51616 8.09627 8.67619 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.004096 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.500493 B = 6833.760495 C = 9063.963183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.614 5.614 3 C 0.137 3.863 4 C 0.009 3.991 5 H 0.099 0.901 6 C -0.113 4.113 7 C -0.002 4.002 8 N -0.453 5.453 9 C 0.034 3.966 10 C 0.440 3.560 11 O -0.618 6.618 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.918 5.918 17 Si 0.990 3.010 18 H -0.273 1.273 19 H -0.265 1.265 20 H -0.275 1.275 21 C 0.518 3.482 22 O -0.557 6.557 23 C -0.120 4.120 24 H 0.103 0.897 25 C -0.115 4.115 26 C 0.044 3.956 27 N -0.541 5.541 28 C 0.016 3.984 29 C 0.060 3.940 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.078 0.922 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 6.824 -18.317 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.347 5.347 3 C 0.014 3.986 4 C -0.101 4.101 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.131 4.131 8 N -0.175 5.175 9 C -0.098 4.098 10 C 0.227 3.773 11 O -0.504 6.504 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.559 5.559 17 Si 0.813 3.187 18 H -0.198 1.198 19 H -0.189 1.189 20 H -0.200 1.200 21 C 0.306 3.694 22 O -0.433 6.433 23 C -0.141 4.141 24 H 0.121 0.879 25 C -0.153 4.153 26 C -0.084 4.084 27 N -0.266 5.266 28 C -0.132 4.132 29 C -0.068 4.068 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.229 0.771 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.096 0.904 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.937 6.261 -18.971 22.312 hybrid contribution -0.735 -0.523 2.273 2.445 sum -10.672 5.738 -16.698 20.631 Atomic orbital electron populations 1.22130 0.77501 1.04293 1.03340 1.47748 1.07943 1.05189 1.73806 1.21491 0.97645 0.85072 0.94370 1.24035 0.97498 0.92032 0.96528 0.88365 1.23075 0.96948 0.98994 0.96072 1.23620 0.99872 0.92044 0.97545 1.68982 1.16244 1.18044 1.14268 1.22229 0.95074 0.98461 0.93991 1.20777 0.88593 0.84197 0.83720 1.90507 1.16545 1.68232 1.75071 1.41886 1.09565 1.42354 1.27237 1.19562 0.92541 1.24929 1.09395 0.90989 1.25964 0.96939 0.98642 0.99243 1.69651 1.08324 1.43071 1.34821 0.85049 0.77892 0.78108 0.77642 1.19797 1.18929 1.20010 1.20557 0.87513 0.86007 0.75318 1.90723 1.15980 1.87338 1.49304 1.22185 0.98130 0.92913 1.00916 0.87910 1.22397 0.98847 0.94624 0.99460 1.23229 0.98358 0.94923 0.91882 1.64740 1.29510 1.06913 1.25398 1.22584 0.92350 0.99519 0.98759 1.22840 0.97084 0.95231 0.91671 0.90341 0.91139 0.89086 0.86142 0.92033 0.89443 0.87223 0.91682 0.93213 0.90981 0.89256 0.77145 0.91206 0.91856 0.92266 0.92341 0.89503 0.90072 0.90751 0.94438 0.90406 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.08 127.77 1.16 2.02 16 2 N -0.61 -13.56 2.73 -846.74 -2.31 -15.87 16 3 C 0.14 2.86 5.57 86.38 0.48 3.34 16 4 C 0.01 0.22 3.36 42.19 0.14 0.36 16 5 H 0.10 1.83 7.77 -2.39 -0.02 1.81 16 6 C -0.11 -2.56 8.00 30.94 0.25 -2.31 16 7 C 0.00 -0.05 6.71 83.58 0.56 0.51 16 8 N -0.45 -16.30 4.69 -906.65 -4.25 -20.55 16 9 C 0.03 1.30 5.31 85.55 0.45 1.76 16 10 C 0.44 22.79 7.62 87.65 0.67 23.46 16 11 O -0.62 -37.79 15.34 -3.09 -0.05 -37.84 16 12 N -0.57 -30.92 5.29 -306.98 -1.62 -32.54 16 13 C -0.33 -19.87 9.68 84.04 0.81 -19.05 16 14 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 15 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 16 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 17 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.52 16.06 5.90 87.66 0.52 16.58 16 22 O -0.56 -23.57 14.43 -3.03 -0.04 -23.62 16 23 C -0.12 -3.13 2.47 -10.66 -0.03 -3.16 16 24 H 0.10 2.55 7.39 -2.39 -0.02 2.53 16 25 C -0.11 -3.51 6.42 31.86 0.20 -3.31 16 26 C 0.04 1.01 6.56 86.71 0.57 1.58 16 27 N -0.54 -11.45 5.55 -908.82 -5.05 -16.50 16 28 C 0.02 0.23 9.40 127.69 1.20 1.43 16 29 C 0.06 1.14 4.95 86.45 0.43 1.57 16 30 H 0.08 0.65 7.54 -2.39 -0.02 0.63 16 31 H 0.07 0.90 6.22 -2.39 -0.01 0.88 16 32 H 0.09 0.79 8.07 -2.39 -0.02 0.77 16 33 H 0.12 1.43 8.07 -2.38 -0.02 1.41 16 34 H 0.06 1.66 7.18 -2.39 -0.02 1.64 16 35 H 0.09 2.11 7.95 -2.38 -0.02 2.09 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 2.07 7.70 -2.38 -0.02 2.05 16 38 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 39 H 0.07 2.36 7.56 -2.39 -0.02 2.34 16 40 H 0.09 3.18 7.60 -2.39 -0.02 3.16 16 41 H 0.39 20.02 7.90 -92.71 -0.73 19.28 16 42 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.06 2.34 6.89 -2.38 -0.02 2.32 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 1.20 7.96 -2.38 -0.02 1.18 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.04 0.49 8.00 -2.39 -0.02 0.47 16 50 H 0.08 1.08 7.73 -2.39 -0.02 1.06 16 51 H 0.08 1.57 6.74 -2.39 -0.02 1.56 16 Total: -1.00 -83.18 401.09 -2.93 -86.12 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: 0.19 Total: 39.50 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 7.89 Total: 24.81 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -12.95 Total: -135.17 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -0.09 Total: -61.46 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -83.18 -2.93 -86.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479266376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.315 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds