Wall clock time and date at job start Tue Mar 31 2020 21:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00256 * 2 1 4 4 N 1.46497 * 109.47453 * 124.99808 * 3 2 1 5 5 C 1.34778 * 120.00408 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99652 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00005 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47393 * 59.99740 * 8 7 5 10 10 C 1.53005 * 109.47098 * 299.99433 * 8 7 5 11 11 C 1.50696 * 109.47012 * 180.02562 * 8 7 5 12 12 O 1.21283 * 120.00563 * 144.99982 * 11 8 7 13 13 N 1.34777 * 119.99885 * 324.99661 * 11 8 7 14 14 C 1.46508 * 120.00015 * 179.97438 * 13 11 8 15 15 C 1.53000 * 109.46810 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.85038 * 43.80987 * 15 14 13 17 17 C 1.53787 * 113.60890 * 175.00176 * 15 14 13 18 18 C 1.53784 * 87.07923 * 139.98364 * 17 15 14 19 19 H 1.09002 * 113.61478 * 89.11632 * 18 17 15 20 20 N 1.46497 * 113.61569 * 220.01663 * 18 17 15 21 21 C 1.36932 * 120.00479 * 205.00086 * 20 18 17 22 22 H 1.08003 * 119.99876 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00413 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99626 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00270 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47154 * 89.99554 * 25 23 21 27 27 H 1.48496 * 109.47241 * 209.99959 * 25 23 21 28 28 H 1.48500 * 109.46722 * 330.00057 * 25 23 21 29 29 C 1.53779 * 87.08045 * 334.56667 * 18 17 15 30 30 H 1.08000 * 119.99901 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00072 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00075 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47161 * 4.99879 * 3 2 1 34 34 H 1.08994 * 109.47539 * 245.00113 * 3 2 1 35 35 H 0.97001 * 119.99910 * 359.97438 * 4 3 2 36 36 H 0.96994 * 119.99911 * 359.97438 * 7 5 4 37 37 H 1.08994 * 109.47067 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.46778 * 299.99701 * 9 8 7 39 39 H 1.08997 * 109.46889 * 59.99905 * 9 8 7 40 40 H 1.08993 * 109.47721 * 300.00186 * 10 8 7 41 41 H 1.09000 * 109.46798 * 60.00327 * 10 8 7 42 42 H 1.09001 * 109.47145 * 179.97438 * 10 8 7 43 43 H 0.96999 * 120.00101 * 0.02562 * 13 11 8 44 44 H 1.09003 * 109.46643 * 60.00190 * 14 13 11 45 45 H 1.08993 * 109.47454 * 300.00286 * 14 13 11 46 46 H 1.09004 * 113.61202 * 254.53117 * 17 15 14 47 47 H 1.08994 * 113.61447 * 25.43549 * 17 15 14 48 48 H 0.97009 * 119.99534 * 24.99936 * 20 18 17 49 49 H 0.97001 * 119.99577 * 180.02562 * 24 23 21 50 50 H 1.09006 * 113.61307 * 270.88660 * 29 18 17 51 51 H 1.08999 * 113.69146 * 139.99146 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7143 3.3583 0.5764 7 7 4.6345 2.4334 2.3741 8 6 5.4876 3.6040 2.5933 9 6 4.6121 4.8406 2.8058 10 6 6.3842 3.8175 1.3720 11 6 6.3451 3.3794 3.8120 12 8 7.4757 3.8170 3.8472 13 7 5.8555 2.6923 4.8631 14 6 6.6893 2.4735 6.0477 15 6 5.9003 1.6731 7.0859 16 1 5.3495 0.8402 6.6489 17 6 6.7278 1.2836 8.3222 18 6 5.4790 1.6025 9.1611 19 1 4.8119 0.7505 9.2923 20 7 5.7772 2.2922 10.4187 21 6 4.9116 2.1945 11.4752 22 1 4.0091 1.6087 11.3815 23 6 5.1939 2.8485 12.6666 24 7 6.2940 3.5620 12.7810 25 14 4.0127 2.7158 14.1076 26 1 4.3856 1.5495 14.9477 27 1 4.0841 3.9555 14.9220 28 1 2.6292 2.5369 13.5986 29 6 5.0541 2.5483 8.0255 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 3.0445 0.5747 1.7356 36 1 4.6857 1.6759 2.9778 37 1 5.2469 5.7114 2.9694 38 1 3.9923 5.0028 1.9240 39 1 3.9735 4.6884 3.6759 40 1 7.0079 2.9366 1.2206 41 1 5.7643 3.9797 0.4902 42 1 7.0186 4.6887 1.5349 43 1 4.9514 2.3421 4.8350 44 1 6.9765 3.4354 6.4726 45 1 7.5843 1.9196 5.7648 46 1 7.0114 0.2313 8.3439 47 1 7.5660 1.9530 8.5152 48 1 6.5880 2.8180 10.5029 49 1 6.4915 4.0187 13.6137 50 1 5.4349 3.5636 8.1374 51 1 3.9867 2.5183 7.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479348874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:00 Heat of formation + Delta-G solvation = -13.163815 kcal Electronic energy + Delta-G solvation = -29180.712641 eV Core-core repulsion = 25116.783786 eV Total energy + Delta-G solvation = -4063.928855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10282 -39.75617 -38.59419 -36.71885 -35.44837 -34.86783 -33.48098 -33.31391 -31.28991 -30.33298 -27.80611 -27.36711 -26.44382 -25.15355 -24.25837 -23.26654 -21.41791 -21.14388 -20.76047 -19.85978 -19.23750 -18.87194 -17.73294 -17.07313 -16.40622 -16.18860 -15.92410 -15.65885 -15.13854 -15.06593 -14.75314 -14.59257 -14.42047 -14.07826 -13.75277 -13.61439 -13.60974 -13.11349 -13.00059 -12.84637 -12.47604 -12.28853 -12.10908 -11.94801 -11.86571 -11.67109 -11.54902 -11.45859 -11.28764 -10.87767 -10.63649 -10.53597 -10.31686 -10.19221 -10.13310 -9.88304 -9.79331 -9.66560 -9.52421 -9.28268 -9.17653 -8.90699 -7.00177 -5.81551 -3.10657 1.48473 2.15500 2.59868 2.82550 2.91440 3.40156 3.45266 3.47244 3.81741 4.25667 4.31789 4.54984 4.55623 4.69884 4.75618 4.88772 4.94047 5.06493 5.15412 5.22572 5.30762 5.40315 5.41730 5.43185 5.52400 5.55959 5.67365 5.74213 5.77127 5.86280 5.87475 5.98553 6.01895 6.04141 6.07489 6.11871 6.15730 6.20455 6.24254 6.29458 6.35646 6.44227 6.53363 6.76176 7.05410 7.24893 7.57317 7.65445 7.95582 8.21437 8.36850 9.47934 10.05899 10.39895 11.40700 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002051 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.853252 B =13649.985609 C =15112.481600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.166 3.834 4 N -0.744 5.744 5 C 0.710 3.290 6 O -0.581 6.581 7 N -0.741 5.741 8 C 0.181 3.819 9 C -0.161 4.161 10 C -0.150 4.150 11 C 0.514 3.486 12 O -0.525 6.525 13 N -0.722 5.722 14 C 0.130 3.870 15 C -0.127 4.127 16 H 0.087 0.913 17 C -0.142 4.142 18 C 0.166 3.834 19 H 0.075 0.925 20 N -0.712 5.712 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.161 4.161 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.398 0.602 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.078 0.922 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 -7.399 -27.501 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.043 3.957 4 N -0.400 5.400 5 C 0.410 3.590 6 O -0.458 6.458 7 N -0.399 5.399 8 C 0.092 3.908 9 C -0.219 4.219 10 C -0.208 4.208 11 C 0.298 3.702 12 O -0.400 6.400 13 N -0.374 5.374 14 C 0.007 3.993 15 C -0.147 4.147 16 H 0.106 0.894 17 C -0.182 4.182 18 C 0.054 3.946 19 H 0.093 0.907 20 N -0.350 5.350 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.202 4.202 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.231 0.769 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.232 0.768 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.097 0.903 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.838 -6.191 -27.983 29.464 hybrid contribution -0.781 -0.869 1.491 1.894 sum -7.618 -7.061 -26.492 28.456 Atomic orbital electron populations 1.24012 0.95795 1.02552 0.97674 1.23002 0.96238 0.98118 1.02425 1.20252 0.91132 0.95436 0.88923 1.45126 1.42918 1.19464 1.32472 1.15822 0.78764 0.83075 0.81294 1.90887 1.71533 1.35602 1.47811 1.45291 1.42730 1.20770 1.31144 1.20425 0.89897 0.86544 0.93954 1.22219 1.00096 0.95596 1.04028 1.22074 0.98983 1.02891 0.96880 1.20468 0.87373 0.78299 0.84062 1.90748 1.18402 1.49191 1.81645 1.46162 1.18083 1.56125 1.17016 1.21518 0.93337 1.00535 0.83943 1.22644 0.99176 0.98972 0.93884 0.89447 1.23453 0.99187 1.00890 0.94654 1.21508 0.93937 0.93878 0.85275 0.90695 1.42410 1.25982 1.57731 1.08899 1.19288 1.01572 1.25605 0.91163 0.91122 1.24782 0.97780 1.00205 0.98173 1.69662 1.25506 1.36356 1.26388 0.86185 0.80239 0.77019 0.82704 1.21679 1.21743 1.20754 1.23962 0.98324 0.99915 0.98026 0.88073 0.87816 0.86686 0.91066 0.90709 0.76871 0.76993 0.90925 0.88851 0.92068 0.92498 0.89466 0.90592 0.76771 0.90948 0.91506 0.91974 0.90060 0.78046 0.93420 0.90309 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 14.32 29.01 0.42 -0.22 16 2 C -0.18 -0.75 9.63 -36.03 -0.35 -1.10 16 3 C 0.17 0.99 6.11 -5.20 -0.03 0.96 16 4 N -0.74 -4.57 5.55 -66.42 -0.37 -4.94 16 5 C 0.71 6.41 7.98 -86.92 -0.69 5.72 16 6 O -0.58 -7.17 12.55 5.28 0.07 -7.11 16 7 N -0.74 -5.71 4.86 -53.50 -0.26 -5.97 16 8 C 0.18 1.81 0.98 -132.97 -0.13 1.68 16 9 C -0.16 -1.63 8.38 37.16 0.31 -1.32 16 10 C -0.15 -1.61 7.93 37.16 0.29 -1.31 16 11 C 0.51 6.08 6.65 -10.99 -0.07 6.00 16 12 O -0.53 -8.23 16.09 5.55 0.09 -8.14 16 13 N -0.72 -7.23 5.25 -60.29 -0.32 -7.55 16 14 C 0.13 1.55 5.51 -4.04 -0.02 1.53 16 15 C -0.13 -1.54 3.75 -89.81 -0.34 -1.88 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.14 -2.13 7.39 -25.91 -0.19 -2.32 16 18 C 0.17 3.07 4.48 -67.12 -0.30 2.77 16 19 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 20 N -0.71 -17.37 5.40 -52.64 -0.28 -17.66 16 21 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 22 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 C -0.16 -2.51 7.43 -25.92 -0.19 -2.71 16 30 H 0.10 0.38 7.84 -52.49 -0.41 -0.03 16 31 H 0.10 0.30 8.06 -52.49 -0.42 -0.12 16 32 H 0.12 0.37 8.06 -52.48 -0.42 -0.05 16 33 H 0.07 0.48 7.79 -51.92 -0.40 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 1.48 8.48 -40.82 -0.35 1.13 16 36 H 0.40 2.14 7.25 -40.82 -0.30 1.84 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.04 6.16 -51.93 -0.32 0.72 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.99 6.16 -51.93 -0.32 0.67 16 42 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 43 H 0.40 3.02 7.22 -40.82 -0.29 2.72 16 44 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 48 H 0.39 10.06 7.92 -40.82 -0.32 9.74 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 415.67 15.07 6.26 6.26 Total: -1.00 -33.62 415.67 -9.21 -42.83 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.56 Total: 11.85 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.54 Total: 0.53 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.51 Total: -63.27 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.16 Total: -15.25 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.62 -9.21 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479348874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds