Wall clock time and date at job start Tue Mar 31 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00256 * 2 1 4 4 N 1.46497 * 109.47453 * 124.99808 * 3 2 1 5 5 C 1.34778 * 120.00408 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99652 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00005 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47393 * 59.99740 * 8 7 5 10 10 C 1.53005 * 109.47098 * 299.99433 * 8 7 5 11 11 C 1.50696 * 109.47012 * 180.02562 * 8 7 5 12 12 O 1.21283 * 120.00563 * 144.99982 * 11 8 7 13 13 N 1.34777 * 119.99885 * 324.99661 * 11 8 7 14 14 C 1.46508 * 120.00015 * 179.97438 * 13 11 8 15 15 C 1.53000 * 109.46810 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.85038 * 43.80987 * 15 14 13 17 17 C 1.53787 * 113.60890 * 175.00176 * 15 14 13 18 18 C 1.53784 * 87.07923 * 139.98364 * 17 15 14 19 19 H 1.09002 * 113.61478 * 89.11632 * 18 17 15 20 20 N 1.46497 * 113.61569 * 220.01663 * 18 17 15 21 21 C 1.36932 * 120.00479 * 205.00086 * 20 18 17 22 22 H 1.08003 * 119.99876 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00413 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99626 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00270 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47154 * 89.99554 * 25 23 21 27 27 H 1.48496 * 109.47241 * 209.99959 * 25 23 21 28 28 H 1.48500 * 109.46722 * 330.00057 * 25 23 21 29 29 C 1.53779 * 87.08045 * 334.56667 * 18 17 15 30 30 H 1.08000 * 119.99901 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00072 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00075 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47161 * 4.99879 * 3 2 1 34 34 H 1.08994 * 109.47539 * 245.00113 * 3 2 1 35 35 H 0.97001 * 119.99910 * 359.97438 * 4 3 2 36 36 H 0.96994 * 119.99911 * 359.97438 * 7 5 4 37 37 H 1.08994 * 109.47067 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.46778 * 299.99701 * 9 8 7 39 39 H 1.08997 * 109.46889 * 59.99905 * 9 8 7 40 40 H 1.08993 * 109.47721 * 300.00186 * 10 8 7 41 41 H 1.09000 * 109.46798 * 60.00327 * 10 8 7 42 42 H 1.09001 * 109.47145 * 179.97438 * 10 8 7 43 43 H 0.96999 * 120.00101 * 0.02562 * 13 11 8 44 44 H 1.09003 * 109.46643 * 60.00190 * 14 13 11 45 45 H 1.08993 * 109.47454 * 300.00286 * 14 13 11 46 46 H 1.09004 * 113.61202 * 254.53117 * 17 15 14 47 47 H 1.08994 * 113.61447 * 25.43549 * 17 15 14 48 48 H 0.97009 * 119.99534 * 24.99936 * 20 18 17 49 49 H 0.97001 * 119.99577 * 180.02562 * 24 23 21 50 50 H 1.09006 * 113.61307 * 270.88660 * 29 18 17 51 51 H 1.08999 * 113.69146 * 139.99146 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3335 6 8 3.7143 3.3583 0.5764 7 7 4.6345 2.4334 2.3741 8 6 5.4876 3.6040 2.5933 9 6 4.6121 4.8406 2.8058 10 6 6.3842 3.8175 1.3720 11 6 6.3451 3.3794 3.8120 12 8 7.4757 3.8170 3.8472 13 7 5.8555 2.6923 4.8631 14 6 6.6893 2.4735 6.0477 15 6 5.9003 1.6731 7.0859 16 1 5.3495 0.8402 6.6489 17 6 6.7278 1.2836 8.3222 18 6 5.4790 1.6025 9.1611 19 1 4.8119 0.7505 9.2923 20 7 5.7772 2.2922 10.4187 21 6 4.9116 2.1945 11.4752 22 1 4.0091 1.6087 11.3815 23 6 5.1939 2.8485 12.6666 24 7 6.2940 3.5620 12.7810 25 14 4.0127 2.7158 14.1076 26 1 4.3856 1.5495 14.9477 27 1 4.0841 3.9555 14.9220 28 1 2.6292 2.5369 13.5986 29 6 5.0541 2.5483 8.0255 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 3.0445 0.5747 1.7356 36 1 4.6857 1.6759 2.9778 37 1 5.2469 5.7114 2.9694 38 1 3.9923 5.0028 1.9240 39 1 3.9735 4.6884 3.6759 40 1 7.0079 2.9366 1.2206 41 1 5.7643 3.9797 0.4902 42 1 7.0186 4.6887 1.5349 43 1 4.9514 2.3421 4.8350 44 1 6.9765 3.4354 6.4726 45 1 7.5843 1.9196 5.7648 46 1 7.0114 0.2313 8.3439 47 1 7.5660 1.9530 8.5152 48 1 6.5880 2.8180 10.5029 49 1 6.4915 4.0187 13.6137 50 1 5.4349 3.5636 8.1374 51 1 3.9867 2.5183 7.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479348874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:59 Heat of formation + Delta-G solvation = -38.359564 kcal Electronic energy + Delta-G solvation = -29181.805210 eV Core-core repulsion = 25116.783786 eV Total energy + Delta-G solvation = -4065.021425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93502 -40.65417 -39.83180 -37.35441 -36.23103 -36.10315 -35.01665 -34.02354 -32.17797 -31.95744 -29.00308 -28.26318 -26.96568 -26.43599 -25.95870 -24.39951 -22.41019 -22.15338 -21.29427 -20.75225 -20.32766 -19.72687 -19.01621 -18.44803 -17.29383 -17.00811 -16.62367 -16.58315 -16.50657 -16.10939 -15.79944 -15.66069 -15.30136 -15.16775 -14.94502 -14.84785 -14.51740 -14.17749 -13.95835 -13.49448 -13.40052 -13.34042 -13.21588 -13.11205 -13.01944 -12.92135 -12.89718 -12.65012 -12.37694 -12.19185 -12.06966 -11.99010 -11.63797 -11.54741 -11.36000 -11.08812 -10.83836 -10.74426 -10.52116 -10.37270 -10.16843 -9.83947 -8.96302 -7.93853 -5.21835 1.06123 1.36886 1.47726 1.49203 1.57482 1.87837 1.96016 2.14357 2.57268 3.26123 3.37616 3.45521 3.72589 3.75254 3.87593 3.90827 3.90996 3.97886 4.22606 4.27765 4.37165 4.43663 4.57216 4.57521 4.63817 4.67923 4.73549 4.77554 4.80568 4.82152 4.98986 5.01004 5.03741 5.06809 5.12873 5.20977 5.24006 5.30021 5.34715 5.42500 5.47161 5.53661 5.69526 5.75180 5.82201 5.91205 6.28579 6.38722 7.01915 7.06651 7.34035 7.55531 8.13327 8.34122 9.29593 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002051 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.853252 B =13649.985609 C =15112.481600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.166 3.834 4 N -0.730 5.730 5 C 0.707 3.293 6 O -0.616 6.616 7 N -0.729 5.729 8 C 0.190 3.810 9 C -0.157 4.157 10 C -0.145 4.145 11 C 0.518 3.482 12 O -0.565 6.565 13 N -0.706 5.706 14 C 0.135 3.865 15 C -0.093 4.093 16 H 0.127 0.873 17 C -0.137 4.137 18 C 0.142 3.858 19 H 0.082 0.918 20 N -0.731 5.731 21 C -0.240 4.240 22 H 0.080 0.920 23 C -0.082 4.082 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.155 4.155 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.412 0.588 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.414 0.586 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.053 0.947 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 -9.779 -28.568 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.042 3.958 4 N -0.386 5.386 5 C 0.407 3.593 6 O -0.496 6.496 7 N -0.388 5.388 8 C 0.099 3.901 9 C -0.215 4.215 10 C -0.203 4.203 11 C 0.303 3.697 12 O -0.443 6.443 13 N -0.358 5.358 14 C 0.012 3.988 15 C -0.112 4.112 16 H 0.145 0.855 17 C -0.176 4.176 18 C 0.033 3.967 19 H 0.100 0.900 20 N -0.368 5.368 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.274 4.274 24 N -0.623 5.623 25 Si 0.802 3.198 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.196 4.196 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.251 0.749 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.731 -8.670 -29.083 31.579 hybrid contribution -0.247 -0.174 1.729 1.756 sum -8.979 -8.843 -27.353 30.117 Atomic orbital electron populations 1.24165 0.95815 1.03127 0.96849 1.22947 0.96234 0.97564 1.03081 1.20248 0.90842 0.96261 0.88402 1.45011 1.41962 1.19045 1.32577 1.15967 0.79014 0.83253 0.81081 1.90873 1.72576 1.37121 1.49052 1.45025 1.42036 1.20531 1.31228 1.20190 0.89753 0.87359 0.92755 1.22167 0.99912 0.95520 1.03916 1.22000 0.98835 1.02564 0.96939 1.20669 0.86866 0.77640 0.84557 1.90740 1.20273 1.50868 1.82396 1.45959 1.18568 1.55382 1.15884 1.21326 0.93813 0.99372 0.84321 1.22484 0.97401 0.98818 0.92531 0.85478 1.23328 0.97525 1.01718 0.95049 1.21981 0.96387 0.94484 0.83892 0.90006 1.42647 1.25199 1.58445 1.10490 1.19726 1.01714 1.23964 0.91763 0.90240 1.25602 0.99660 1.01030 1.01067 1.69826 1.27626 1.38202 1.26639 0.85149 0.78882 0.76378 0.79427 1.21441 1.22631 1.19221 1.23738 0.99696 0.98470 0.97657 0.88299 0.86526 0.85328 0.92142 0.91658 0.75149 0.75312 0.91402 0.89700 0.91271 0.92462 0.90141 0.91429 0.74896 0.93396 0.90988 0.90141 0.91641 0.79706 0.94188 0.92805 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 14.32 67.78 0.97 0.04 16 2 C -0.18 -1.12 9.63 25.65 0.25 -0.88 16 3 C 0.17 1.76 6.11 85.63 0.52 2.29 16 4 N -0.73 -7.45 5.55 -482.30 -2.68 -10.12 16 5 C 0.71 11.63 7.98 179.05 1.43 13.06 16 6 O -0.62 -14.87 12.55 -4.01 -0.05 -14.92 16 7 N -0.73 -9.64 4.86 -441.44 -2.15 -11.78 16 8 C 0.19 3.56 0.98 2.86 0.00 3.56 16 9 C -0.16 -3.04 8.38 71.98 0.60 -2.44 16 10 C -0.14 -3.05 7.93 71.98 0.57 -2.48 16 11 C 0.52 11.46 6.65 87.66 0.58 12.04 16 12 O -0.57 -17.41 16.09 -3.04 -0.05 -17.46 16 13 N -0.71 -12.23 5.25 -463.05 -2.43 -14.66 16 14 C 0.14 2.93 5.51 86.38 0.48 3.41 16 15 C -0.09 -1.95 3.75 -10.27 -0.04 -1.99 16 16 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 17 C -0.14 -3.82 7.39 31.12 0.23 -3.59 16 18 C 0.14 5.03 4.48 45.52 0.20 5.24 16 19 H 0.08 2.78 8.10 -2.39 -0.02 2.77 16 20 N -0.73 -35.78 5.40 -320.45 -1.73 -37.51 16 21 C -0.24 -12.99 9.97 84.03 0.84 -12.15 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 24 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 25 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 C -0.15 -4.53 7.43 31.12 0.23 -4.30 16 30 H 0.10 0.60 7.84 -2.91 -0.02 0.58 16 31 H 0.12 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.06 0.78 7.79 -2.38 -0.02 0.76 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.41 1.80 8.48 -92.71 -0.79 1.02 16 36 H 0.41 3.04 7.25 -92.71 -0.67 2.37 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.85 6.16 -2.39 -0.01 1.84 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.83 6.16 -2.39 -0.01 1.82 16 42 H 0.07 1.52 7.87 -2.39 -0.02 1.50 16 43 H 0.41 4.64 7.22 -92.71 -0.67 3.97 16 44 H 0.05 1.32 7.84 -2.39 -0.02 1.30 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 48 H 0.37 19.93 7.92 -92.70 -0.73 19.19 16 49 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.05 1.87 7.90 -2.38 -0.02 1.85 16 51 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.82 415.67 -1.34 -76.16 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -1.90 Total: 34.36 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 7.34 Total: 7.63 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -8.70 Total: -133.43 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.10 Total: -32.38 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.82 -1.34 -76.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479348874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.799 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds