Wall clock time and date at job start Tue Mar 31 2020 21:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47061 * 2 1 4 4 C 1.52999 * 109.46537 * 239.99810 * 2 1 3 5 5 N 1.46506 * 109.46722 * 185.00394 * 4 2 1 6 6 C 1.34776 * 119.99768 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00490 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.54136 * 110.74682 * 327.44883 * 8 6 5 10 10 C 1.57069 * 102.00275 * 97.58046 * 9 8 6 11 11 C 1.54832 * 101.73058 * 36.30901 * 10 9 8 12 12 N 1.47852 * 110.77724 * 87.12179 * 8 6 5 13 13 C 1.47959 * 108.37288 * 120.32654 * 12 8 6 14 14 C 1.54828 * 105.06644 * 337.18487 * 13 12 8 15 15 C 1.54142 * 110.74066 * 206.00750 * 8 6 5 16 16 N 1.46898 * 109.46868 * 120.00428 * 2 1 3 17 17 C 1.46899 * 110.99825 * 274.99371 * 16 2 1 18 18 C 1.50701 * 109.47742 * 180.02562 * 17 16 2 19 19 O 1.21299 * 119.99546 * 0.02562 * 18 17 16 20 20 N 1.34767 * 120.00548 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00267 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99826 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00300 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47075 * 89.99838 * 25 23 21 27 27 H 1.48498 * 109.47104 * 210.00179 * 25 23 21 28 28 H 1.48500 * 109.47347 * 329.99969 * 25 23 21 29 29 H 1.08996 * 109.46795 * 59.99558 * 1 2 3 30 30 H 1.08998 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46613 * 300.00290 * 1 2 3 32 32 H 1.08997 * 109.47029 * 65.00464 * 4 2 1 33 33 H 1.08995 * 109.47308 * 304.99993 * 4 2 1 34 34 H 0.96996 * 119.99851 * 359.97438 * 5 4 2 35 35 H 1.08999 * 110.72901 * 215.77093 * 9 8 6 36 36 H 1.08998 * 110.72852 * 339.07376 * 9 8 6 37 37 H 1.09003 * 111.10527 * 278.12792 * 10 9 8 38 38 H 1.09002 * 110.80858 * 154.36344 * 10 9 8 39 39 H 1.08997 * 110.33002 * 204.26080 * 11 10 9 40 40 H 1.09003 * 110.32103 * 82.05647 * 11 10 9 41 41 H 1.08999 * 110.32231 * 218.28820 * 13 12 8 42 42 H 1.08995 * 110.40763 * 96.12676 * 13 12 8 43 43 H 1.08997 * 110.99165 * 278.57667 * 14 13 12 44 44 H 1.08999 * 110.99344 * 154.76208 * 14 13 12 45 45 H 1.08999 * 110.72864 * 20.92468 * 15 8 6 46 46 H 1.09003 * 110.72542 * 144.21749 * 15 8 6 47 47 H 1.00900 * 111.00179 * 151.04380 * 16 2 1 48 48 H 1.08999 * 109.47664 * 300.00729 * 17 16 2 49 49 H 1.09005 * 109.47383 * 60.00336 * 17 16 2 50 50 H 0.96998 * 120.00032 * 359.97438 * 20 18 17 51 51 H 0.96994 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.1730 -1.4285 -2.1912 7 8 3.5699 -1.8835 -3.1400 8 6 5.6750 -1.5362 -2.1311 9 6 6.2812 -0.3184 -1.4064 10 6 6.4894 -0.8739 0.0479 11 6 6.8983 -2.3410 -0.2311 12 7 6.0846 -2.7521 -1.3963 13 6 6.8915 -3.5963 -2.3048 14 6 6.4767 -3.1625 -3.7320 15 6 6.2723 -1.6353 -3.5486 16 7 2.0197 -0.6926 1.1994 17 6 2.0826 0.2225 2.3468 18 6 2.5885 -0.5216 3.5557 19 8 2.8696 -1.6984 3.4698 20 7 2.7287 0.1205 4.7323 21 6 3.1895 -0.5563 5.8320 22 1 3.4398 -1.6042 5.7554 23 6 3.3346 0.1058 7.0450 24 7 3.0306 1.3808 7.1380 25 14 3.9618 -0.8166 8.5434 26 1 5.4428 -0.7226 8.5984 27 1 3.3817 -0.2175 9.7721 28 1 3.5595 -2.2431 8.4508 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.7516 -0.1583 -2.1369 33 1 1.6053 -1.7198 -1.2951 34 1 3.9824 -0.4623 -0.4320 35 1 7.2327 -0.0357 -1.8568 36 1 5.5853 0.5206 -1.4136 37 1 5.5635 -0.8291 0.6215 38 1 7.2888 -0.3358 0.5573 39 1 6.6698 -2.9682 0.6305 40 1 7.9600 -2.3988 -0.4714 41 1 6.6607 -4.6499 -2.1473 42 1 7.9548 -3.4149 -2.1480 43 1 5.5480 -3.6472 -4.0330 44 1 7.2720 -3.3666 -4.4488 45 1 5.5734 -1.2477 -4.2897 46 1 7.2254 -1.1092 -3.6032 47 1 2.9173 -1.1206 1.0287 48 1 2.7589 1.0461 2.1182 49 1 1.0872 0.6163 2.5526 50 1 2.5043 1.0616 4.8010 51 1 3.1315 1.8429 7.9848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480494918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:16 Heat of formation + Delta-G solvation = -62.055528 kcal Electronic energy + Delta-G solvation = -30783.077704 eV Core-core repulsion = 26717.028745 eV Total energy + Delta-G solvation = -4066.048959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16256 -38.87331 -38.23281 -36.89149 -34.62278 -33.95991 -33.35574 -31.77689 -31.27630 -30.71612 -28.59152 -26.74371 -26.09472 -25.60252 -23.97813 -22.42356 -21.78891 -20.98337 -20.63367 -19.55552 -19.16608 -17.94300 -17.65041 -16.58023 -16.21436 -15.81514 -15.72804 -15.37113 -15.00053 -14.62769 -14.54552 -14.46330 -14.04967 -13.89106 -13.70426 -13.44531 -13.27600 -12.83794 -12.68719 -12.53489 -12.47829 -12.33940 -11.89460 -11.84342 -11.72904 -11.66479 -11.66187 -11.42716 -11.36438 -11.22170 -11.12370 -11.06572 -10.83134 -10.64973 -10.40876 -10.23485 -9.93852 -9.52728 -9.11164 -8.66340 -8.47902 -8.12557 -7.98100 -6.43795 -3.84484 2.47249 3.06319 3.16090 3.25185 3.31350 3.86670 3.88925 4.03392 4.06981 4.20592 4.28286 4.44742 4.64602 4.68925 4.76051 4.79152 4.89621 4.98919 5.09126 5.18338 5.21225 5.23700 5.28284 5.30300 5.40401 5.46962 5.55474 5.57543 5.63876 5.68326 5.71045 5.77380 5.77959 5.78336 5.85861 5.90856 5.95370 6.00164 6.02898 6.20382 6.28867 6.40535 6.56739 6.71245 7.16274 7.39721 7.53469 7.58446 8.04307 8.17300 8.59180 9.16102 9.52124 10.03622 10.73943 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.002941 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.997798 B = 9517.616659 C =11099.211110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.047 0.953 4 C 0.117 3.883 5 N -0.726 5.726 6 C 0.548 3.452 7 O -0.538 6.538 8 C 0.070 3.930 9 C -0.141 4.141 10 C -0.135 4.135 11 C 0.035 3.965 12 N -0.496 5.496 13 C 0.036 3.964 14 C -0.129 4.129 15 C -0.120 4.120 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.580 6.580 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.348 0.652 48 H 0.042 0.958 49 H 0.088 0.912 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 0.691 -19.663 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.065 0.935 4 C -0.007 4.007 5 N -0.380 5.380 6 C 0.333 3.667 7 O -0.413 6.413 8 C -0.023 4.023 9 C -0.179 4.179 10 C -0.173 4.173 11 C -0.092 4.092 12 N -0.222 5.222 13 C -0.091 4.091 14 C -0.167 4.167 15 C -0.159 4.159 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.225 3.775 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.169 0.831 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.230 -0.875 -19.877 20.572 hybrid contribution 1.813 1.427 0.930 2.488 sum 7.043 0.552 -18.947 20.221 Atomic orbital electron populations 1.21733 0.93372 1.02991 1.01491 1.21813 0.97165 0.95804 0.89123 0.93486 1.21614 0.79504 1.02057 0.97482 1.46130 1.07902 1.60247 1.23714 1.19992 0.88604 0.76392 0.81700 1.90656 1.69858 1.47105 1.33691 1.22364 0.92511 0.91821 0.95583 1.23406 1.01751 0.96774 0.96016 1.23182 1.02921 0.95415 0.95819 1.23314 0.95526 0.96018 0.94348 1.65034 1.37114 1.13323 1.06681 1.23283 0.95472 0.98750 0.91619 1.22749 1.02387 0.95160 0.96366 1.22750 1.00720 0.97565 0.94878 1.60114 1.34935 1.32139 1.02654 1.21767 1.01475 0.93775 0.91389 1.19788 0.85058 0.88233 0.84431 1.90545 1.55135 1.16018 1.84695 1.41857 1.57760 1.12424 1.07962 1.19701 1.39847 0.96455 0.86816 0.87917 1.25253 0.97662 0.95773 0.99216 1.69607 1.48650 1.08880 1.27204 0.85870 0.78744 0.79580 0.80187 1.20437 1.20927 1.19368 0.92526 0.91476 0.91997 0.90903 0.90281 0.76584 0.89884 0.90218 0.90358 0.89803 0.89039 0.92776 0.89765 0.92943 0.89933 0.90734 0.89752 0.90688 0.83063 0.94006 0.89390 0.77508 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.41 37.16 0.35 -1.18 16 2 C 0.07 0.86 2.81 -67.71 -0.19 0.67 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 4 C 0.12 1.42 5.31 -4.04 -0.02 1.40 16 5 N -0.73 -8.92 4.62 -60.29 -0.28 -9.20 16 6 C 0.55 7.41 6.89 -10.98 -0.08 7.33 16 7 O -0.54 -8.81 15.98 5.56 0.09 -8.72 16 8 C 0.07 0.77 0.93 -131.04 -0.12 0.65 16 9 C -0.14 -1.25 5.61 -23.93 -0.13 -1.39 16 10 C -0.14 -1.33 6.86 -23.56 -0.16 -1.49 16 11 C 0.04 0.37 6.75 -2.28 -0.02 0.35 16 12 N -0.50 -5.75 5.37 -214.08 -1.15 -6.90 16 13 C 0.04 0.35 6.74 -2.28 -0.02 0.34 16 14 C -0.13 -1.19 7.07 -24.62 -0.17 -1.37 16 15 C -0.12 -1.15 5.72 -24.99 -0.14 -1.29 16 16 N -0.66 -10.45 5.93 -107.99 -0.64 -11.09 16 17 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 18 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 19 O -0.58 -15.47 15.78 5.54 0.09 -15.39 16 20 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 25 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.40 4.60 4.47 -40.82 -0.18 4.42 16 35 H 0.08 0.62 7.32 -51.93 -0.38 0.24 16 36 H 0.08 0.68 7.20 -51.93 -0.37 0.30 16 37 H 0.08 0.89 6.74 -51.93 -0.35 0.54 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.47 7.13 -51.93 -0.37 0.10 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.43 7.14 -51.93 -0.37 0.06 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.89 7.37 -51.93 -0.38 0.51 16 46 H 0.07 0.57 7.32 -51.93 -0.38 0.19 16 47 H 0.35 5.76 6.41 -39.29 -0.25 5.51 16 48 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 49 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 50 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 51 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -32.54 398.42 -9.58 -42.12 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -8.28 Total: 17.84 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.06 Total: 6.98 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.40 Total: -64.62 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.18 Total: -24.11 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.54 -9.58 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480494918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.933 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds