Wall clock time and date at job start Tue Mar 31 2020 21:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47061 * 2 1 4 4 C 1.52999 * 109.46537 * 239.99810 * 2 1 3 5 5 N 1.46506 * 109.46722 * 185.00394 * 4 2 1 6 6 C 1.34776 * 119.99768 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00490 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.54136 * 110.74682 * 327.44883 * 8 6 5 10 10 C 1.57069 * 102.00275 * 97.58046 * 9 8 6 11 11 C 1.54832 * 101.73058 * 36.30901 * 10 9 8 12 12 N 1.47852 * 110.77724 * 87.12179 * 8 6 5 13 13 C 1.47959 * 108.37288 * 120.32654 * 12 8 6 14 14 C 1.54828 * 105.06644 * 337.18487 * 13 12 8 15 15 C 1.54142 * 110.74066 * 206.00750 * 8 6 5 16 16 N 1.46898 * 109.46868 * 120.00428 * 2 1 3 17 17 C 1.46899 * 110.99825 * 274.99371 * 16 2 1 18 18 C 1.50701 * 109.47742 * 180.02562 * 17 16 2 19 19 O 1.21299 * 119.99546 * 0.02562 * 18 17 16 20 20 N 1.34767 * 120.00548 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00267 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99826 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00300 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47075 * 89.99838 * 25 23 21 27 27 H 1.48498 * 109.47104 * 210.00179 * 25 23 21 28 28 H 1.48500 * 109.47347 * 329.99969 * 25 23 21 29 29 H 1.08996 * 109.46795 * 59.99558 * 1 2 3 30 30 H 1.08998 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46613 * 300.00290 * 1 2 3 32 32 H 1.08997 * 109.47029 * 65.00464 * 4 2 1 33 33 H 1.08995 * 109.47308 * 304.99993 * 4 2 1 34 34 H 0.96996 * 119.99851 * 359.97438 * 5 4 2 35 35 H 1.08999 * 110.72901 * 215.77093 * 9 8 6 36 36 H 1.08998 * 110.72852 * 339.07376 * 9 8 6 37 37 H 1.09003 * 111.10527 * 278.12792 * 10 9 8 38 38 H 1.09002 * 110.80858 * 154.36344 * 10 9 8 39 39 H 1.08997 * 110.33002 * 204.26080 * 11 10 9 40 40 H 1.09003 * 110.32103 * 82.05647 * 11 10 9 41 41 H 1.08999 * 110.32231 * 218.28820 * 13 12 8 42 42 H 1.08995 * 110.40763 * 96.12676 * 13 12 8 43 43 H 1.08997 * 110.99165 * 278.57667 * 14 13 12 44 44 H 1.08999 * 110.99344 * 154.76208 * 14 13 12 45 45 H 1.08999 * 110.72864 * 20.92468 * 15 8 6 46 46 H 1.09003 * 110.72542 * 144.21749 * 15 8 6 47 47 H 1.00900 * 111.00179 * 151.04380 * 16 2 1 48 48 H 1.08999 * 109.47664 * 300.00729 * 17 16 2 49 49 H 1.09005 * 109.47383 * 60.00336 * 17 16 2 50 50 H 0.96998 * 120.00032 * 359.97438 * 20 18 17 51 51 H 0.96994 * 119.99814 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.1730 -1.4285 -2.1912 7 8 3.5699 -1.8835 -3.1400 8 6 5.6750 -1.5362 -2.1311 9 6 6.2812 -0.3184 -1.4064 10 6 6.4894 -0.8739 0.0479 11 6 6.8983 -2.3410 -0.2311 12 7 6.0846 -2.7521 -1.3963 13 6 6.8915 -3.5963 -2.3048 14 6 6.4767 -3.1625 -3.7320 15 6 6.2723 -1.6353 -3.5486 16 7 2.0197 -0.6926 1.1994 17 6 2.0826 0.2225 2.3468 18 6 2.5885 -0.5216 3.5557 19 8 2.8696 -1.6984 3.4698 20 7 2.7287 0.1205 4.7323 21 6 3.1895 -0.5563 5.8320 22 1 3.4398 -1.6042 5.7554 23 6 3.3346 0.1058 7.0450 24 7 3.0306 1.3808 7.1380 25 14 3.9618 -0.8166 8.5434 26 1 5.4428 -0.7226 8.5984 27 1 3.3817 -0.2175 9.7721 28 1 3.5595 -2.2431 8.4508 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.7516 -0.1583 -2.1369 33 1 1.6053 -1.7198 -1.2951 34 1 3.9824 -0.4623 -0.4320 35 1 7.2327 -0.0357 -1.8568 36 1 5.5853 0.5206 -1.4136 37 1 5.5635 -0.8291 0.6215 38 1 7.2888 -0.3358 0.5573 39 1 6.6698 -2.9682 0.6305 40 1 7.9600 -2.3988 -0.4714 41 1 6.6607 -4.6499 -2.1473 42 1 7.9548 -3.4149 -2.1480 43 1 5.5480 -3.6472 -4.0330 44 1 7.2720 -3.3666 -4.4488 45 1 5.5734 -1.2477 -4.2897 46 1 7.2254 -1.1092 -3.6032 47 1 2.9173 -1.1206 1.0287 48 1 2.7589 1.0461 2.1182 49 1 1.0872 0.6163 2.5526 50 1 2.5043 1.0616 4.8010 51 1 3.1315 1.8429 7.9848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480494918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:15 Heat of formation + Delta-G solvation = -87.813173 kcal Electronic energy + Delta-G solvation = -30784.194639 eV Core-core repulsion = 26717.028745 eV Total energy + Delta-G solvation = -4067.165894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04541 -40.27492 -39.57276 -38.13433 -35.98912 -35.47121 -34.36730 -33.26808 -32.62902 -31.84698 -29.40702 -28.14472 -27.27757 -26.39380 -25.68019 -23.30096 -22.62942 -21.73133 -21.67804 -21.14022 -20.34513 -19.88382 -18.61017 -17.78363 -17.40397 -16.93374 -16.91138 -16.60351 -16.34464 -16.06383 -15.84825 -15.47249 -15.36889 -15.18321 -14.81861 -14.47410 -14.28665 -14.12318 -13.72356 -13.52401 -13.49230 -13.40668 -13.28153 -13.23216 -12.92465 -12.79995 -12.59297 -12.57407 -12.43993 -12.39888 -12.15986 -12.12277 -11.98336 -11.93101 -11.77690 -11.49402 -11.40346 -10.95043 -10.33083 -10.15635 -9.99951 -9.48035 -9.38226 -8.45707 -5.93834 1.38234 1.42640 1.46094 1.54918 2.06193 2.11281 2.29614 2.85790 3.07006 3.21943 3.29843 3.42076 3.47775 3.67044 3.71257 3.88321 3.95150 4.03650 4.15092 4.17307 4.24871 4.33728 4.38426 4.44511 4.50524 4.56454 4.59058 4.60835 4.67167 4.76807 4.80462 4.84237 4.92217 4.93826 4.98757 4.99915 5.03739 5.08828 5.12950 5.27028 5.30410 5.42370 5.45135 5.78058 5.88536 5.94941 6.09718 6.31629 6.40098 6.61631 7.14351 7.14982 7.57813 8.13535 8.71617 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.002941 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.997798 B = 9517.616659 C =11099.211110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.078 3.922 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.721 5.721 6 C 0.540 3.460 7 O -0.574 6.574 8 C 0.068 3.932 9 C -0.131 4.131 10 C -0.135 4.135 11 C 0.036 3.964 12 N -0.524 5.524 13 C 0.036 3.964 14 C -0.126 4.126 15 C -0.117 4.117 16 N -0.680 5.680 17 C 0.063 3.937 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.571 5.571 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.341 0.659 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 2.380 -20.151 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.003 4.003 5 N -0.374 5.374 6 C 0.326 3.674 7 O -0.452 6.452 8 C -0.025 4.025 9 C -0.169 4.169 10 C -0.173 4.173 11 C -0.092 4.092 12 N -0.250 5.250 13 C -0.091 4.091 14 C -0.164 4.164 15 C -0.156 4.156 16 N -0.315 5.315 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.161 0.839 48 H 0.090 0.910 49 H 0.124 0.876 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.420 0.853 -20.359 21.364 hybrid contribution 1.383 0.852 1.045 1.932 sum 7.804 1.705 -19.314 20.901 Atomic orbital electron populations 1.21745 0.92482 1.02466 1.02745 1.21873 0.97690 0.96369 0.87219 0.91218 1.21579 0.79457 1.01079 0.98194 1.46149 1.08004 1.59747 1.23538 1.20622 0.89983 0.75638 0.81192 1.90631 1.70896 1.48597 1.35079 1.22376 0.90698 0.92578 0.96800 1.23401 1.02847 0.95796 0.94858 1.23161 1.02338 0.95386 0.96448 1.23290 0.96568 0.95941 0.93357 1.64903 1.38363 1.14127 1.07609 1.23322 0.96414 0.98049 0.91363 1.22717 1.01946 0.94931 0.96768 1.22778 1.01509 0.97789 0.93497 1.60120 1.34723 1.32895 1.03805 1.21634 1.02638 0.93646 0.88978 1.20844 0.83253 0.87967 0.85419 1.90517 1.56532 1.18215 1.85566 1.41901 1.58251 1.12572 1.08135 1.19633 1.41981 0.95895 0.88613 0.90475 1.25979 0.97276 0.96584 1.01222 1.69661 1.48605 1.09634 1.28131 0.84979 0.78586 0.78002 0.77104 1.19474 1.19647 1.20002 0.89909 0.92942 0.92072 0.89442 0.92550 0.76059 0.87452 0.89752 0.92565 0.88331 0.91146 0.90608 0.90573 0.90761 0.92654 0.88178 0.91059 0.87918 0.83893 0.91021 0.87628 0.76949 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.41 71.98 0.68 -2.11 16 2 C 0.08 1.75 2.81 44.92 0.13 1.88 16 3 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 4 C 0.12 2.86 5.31 86.38 0.46 3.32 16 5 N -0.72 -17.51 4.62 -463.05 -2.14 -19.65 16 6 C 0.54 14.61 6.89 87.66 0.60 15.22 16 7 O -0.57 -19.27 15.98 -3.03 -0.05 -19.32 16 8 C 0.07 1.43 0.93 3.37 0.00 1.43 16 9 C -0.13 -2.04 5.61 32.41 0.18 -1.86 16 10 C -0.14 -2.50 6.86 32.65 0.22 -2.28 16 11 C 0.04 0.71 6.75 86.73 0.58 1.30 16 12 N -0.52 -11.95 5.37 -831.21 -4.46 -16.42 16 13 C 0.04 0.65 6.74 86.72 0.58 1.24 16 14 C -0.13 -2.21 7.07 31.96 0.23 -1.98 16 15 C -0.12 -2.05 5.72 31.72 0.18 -1.87 16 16 N -0.68 -21.00 5.93 -495.57 -2.94 -23.94 16 17 C 0.06 2.06 5.96 85.56 0.51 2.57 16 18 C 0.44 20.28 7.82 87.66 0.69 20.96 16 19 O -0.62 -34.15 15.78 -3.09 -0.05 -34.20 16 20 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 21 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.92 -48.68 13.05 21.66 0.28 -48.39 16 25 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.40 9.10 4.47 -92.71 -0.41 8.68 16 35 H 0.11 1.19 7.32 -2.39 -0.02 1.17 16 36 H 0.08 1.24 7.20 -2.39 -0.02 1.23 16 37 H 0.06 1.28 6.74 -2.39 -0.02 1.27 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.17 7.13 -2.39 -0.02 1.15 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.03 7.14 -2.39 -0.02 1.01 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.45 7.37 -2.39 -0.02 1.43 16 46 H 0.10 1.22 7.32 -2.39 -0.02 1.20 16 47 H 0.34 11.36 6.41 -89.69 -0.58 10.78 16 48 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 49 H 0.11 3.11 7.44 -2.38 -0.02 3.09 16 50 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 51 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -72.32 398.42 -3.38 -75.71 By element: Atomic # 1 Polarization: 52.71 SS G_CDS: -0.76 Total: 51.95 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.33 Total: 19.98 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -10.88 Total: -138.56 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.10 Total: -53.51 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -72.32 -3.38 -75.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480494918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.108 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds