Wall clock time and date at job start Tue Mar 31 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47382 * 2 1 4 4 C 1.36939 * 120.00050 * 264.29125 * 3 2 1 5 5 H 1.08002 * 120.00234 * 188.63743 * 4 3 2 6 6 C 1.38811 * 120.00048 * 8.63692 * 4 3 2 7 7 N 1.31626 * 120.00122 * 24.60114 * 6 4 3 8 8 Si 1.86802 * 120.00233 * 204.60442 * 6 4 3 9 9 H 1.48500 * 109.46920 * 85.02382 * 8 6 4 10 10 H 1.48498 * 109.47095 * 205.02416 * 8 6 4 11 11 H 1.48503 * 109.46895 * 325.02439 * 8 6 4 12 12 C 1.46497 * 120.00151 * 84.28835 * 3 2 1 13 13 C 1.53005 * 109.47145 * 270.00453 * 12 3 2 14 14 N 1.46497 * 109.47145 * 179.97438 * 13 12 3 15 15 C 1.34781 * 120.00012 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99856 * 359.72621 * 15 14 13 17 17 C 1.50702 * 119.99912 * 179.72425 * 15 14 13 18 18 C 1.50698 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.34822 * 125.78072 * 95.02394 * 18 17 15 20 20 C 1.41469 * 108.08811 * 179.97438 * 19 18 17 21 21 O 1.21772 * 126.19315 * 180.02562 * 20 19 18 22 22 N 1.34874 * 107.61073 * 0.02562 * 20 19 18 23 23 C 1.46498 * 126.16088 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47005 * 274.97205 * 23 22 20 25 25 C 1.52992 * 109.47343 * 64.99935 * 24 23 22 26 26 C 1.53007 * 109.47308 * 185.00274 * 24 23 22 27 27 N 1.36604 * 125.77053 * 274.71331 * 18 17 15 28 28 H 0.97005 * 125.91103 * 359.96418 * 27 18 17 29 29 H 1.08997 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47207 * 300.00217 * 1 2 3 31 31 H 1.09004 * 109.47415 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47207 * 239.99783 * 2 1 3 33 33 H 1.08997 * 109.47662 * 119.99833 * 2 1 3 34 34 H 0.97000 * 120.00369 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47284 * 150.00165 * 12 3 2 36 36 H 1.08996 * 109.46939 * 30.00232 * 12 3 2 37 37 H 1.09001 * 109.47265 * 59.99700 * 13 12 3 38 38 H 1.09005 * 109.46924 * 299.99501 * 13 12 3 39 39 H 0.97002 * 120.00229 * 359.72183 * 14 13 12 40 40 H 1.09005 * 109.46640 * 299.99950 * 17 15 14 41 41 H 1.08993 * 109.47038 * 59.99892 * 17 15 14 42 42 H 1.08000 * 125.95057 * 0.02562 * 19 18 17 43 43 H 1.09002 * 109.47720 * 34.96932 * 23 22 20 44 44 H 1.08997 * 109.47187 * 154.97549 * 23 22 20 45 45 H 1.09003 * 109.47250 * 305.00033 * 24 23 22 46 46 H 1.09002 * 109.47186 * 60.00306 * 25 24 23 47 47 H 1.09002 * 109.47618 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47281 * 300.00499 * 25 24 23 49 49 H 1.09006 * 109.46719 * 59.99807 * 26 24 23 50 50 H 1.08993 * 109.47020 * 180.02562 * 26 24 23 51 51 H 1.08993 * 109.46625 * 300.00034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1714 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4857 -2.4603 8 14 3.0770 1.7731 -3.9088 9 1 4.3045 0.9377 -3.9309 10 1 2.2688 1.4976 -5.1238 11 1 3.4556 3.2088 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8474 1.5584 14 7 0.9587 3.5796 2.8211 15 6 -0.0786 4.3041 3.2854 16 8 -1.1137 4.3539 2.6555 17 6 0.0478 5.0523 4.5875 18 6 -1.2417 5.7758 4.8783 19 6 -2.2474 5.3154 5.6492 20 6 -3.2703 6.2925 5.6666 21 8 -4.3291 6.2145 6.2629 22 7 -2.8604 7.3259 4.9030 23 6 -3.6089 8.5579 4.6418 24 6 -4.5674 8.3337 3.4706 25 6 -5.6205 7.2963 3.8647 26 6 -5.2580 9.6525 3.1170 27 7 -1.5869 7.0119 4.4102 28 1 -1.0449 7.5741 3.8348 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.8971 0.0501 -3.3039 35 1 2.9552 2.8371 1.1838 36 1 2.3579 1.4133 2.0694 37 1 0.0220 2.1242 1.6369 38 1 0.6194 3.5481 0.7513 39 1 1.7867 3.5401 3.3248 40 1 0.2584 4.3479 5.3923 41 1 0.8613 5.7740 4.5143 42 1 -2.2680 4.3664 6.1643 43 1 -4.1783 8.8324 5.5298 44 1 -2.9135 9.3598 4.3938 45 1 -4.0081 7.9736 2.6071 46 1 -6.1799 7.6563 4.7282 47 1 -6.3031 7.1362 3.0302 48 1 -5.1285 6.3568 4.1166 49 1 -4.5076 10.3916 2.8361 50 1 -5.9412 9.4926 2.2829 51 1 -5.8173 10.0125 3.9804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480986718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:24 Heat of formation + Delta-G solvation = 25.021963 kcal Electronic energy + Delta-G solvation = -29546.804767 eV Core-core repulsion = 25484.531772 eV Total energy + Delta-G solvation = -4062.272995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.75226 -39.50783 -37.17707 -36.60769 -36.45374 -34.38764 -33.15616 -31.50266 -30.21810 -30.00178 -29.45587 -27.52321 -27.35772 -25.87176 -24.04447 -22.12291 -21.24854 -21.08922 -20.58240 -20.43561 -19.98604 -18.19576 -17.21768 -16.78394 -16.19478 -15.96686 -15.72517 -15.45037 -14.97895 -14.93426 -14.69916 -14.06121 -13.98816 -13.71461 -13.57644 -13.45014 -13.39601 -12.99611 -12.85000 -12.58685 -12.47490 -12.30849 -12.24082 -12.07231 -11.89793 -11.47147 -11.45007 -11.14975 -11.13907 -11.03335 -10.82280 -10.58683 -10.38532 -10.01151 -9.93465 -9.78537 -9.70949 -9.43393 -9.27197 -8.72913 -8.42417 -7.94188 -6.99479 -5.82466 -3.15709 1.38885 1.57681 2.67537 3.16205 3.35424 3.41290 3.44103 3.46802 3.63174 4.17493 4.39437 4.45475 4.47219 4.69495 4.71942 4.82317 4.97580 5.05539 5.08952 5.27140 5.29324 5.37274 5.48484 5.49759 5.59633 5.68631 5.72434 5.77441 5.80736 5.85331 5.87397 6.04538 6.18291 6.22772 6.29965 6.47289 6.59274 6.60645 6.80755 6.89951 7.05513 7.07769 7.12901 7.35115 7.60837 7.63573 7.73642 8.08270 8.28420 8.28464 8.33820 9.17144 9.78804 10.22798 11.20933 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002177 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.292701 B =12861.179756 C =13604.615195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.591 5.591 4 C -0.256 4.256 5 H 0.074 0.926 6 C 0.000 4.000 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.144 3.856 13 C 0.089 3.911 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.529 6.529 17 C -0.091 4.091 18 C 0.212 3.788 19 C -0.337 4.337 20 C 0.537 3.463 21 O -0.554 6.554 22 N -0.415 5.415 23 C 0.139 3.861 24 C -0.117 4.117 25 C -0.145 4.145 26 C -0.144 4.144 27 N -0.490 5.490 28 H 0.438 0.562 29 H 0.020 0.980 30 H 0.014 0.986 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.004 0.996 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.159 0.841 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 15.126 15.905 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 N -0.312 5.312 4 C -0.385 4.385 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.208 1.208 12 C 0.015 3.985 13 C -0.036 4.036 14 N -0.374 5.374 15 C 0.289 3.711 16 O -0.405 6.405 17 C -0.132 4.132 18 C 0.094 3.906 19 C -0.368 4.368 20 C 0.335 3.665 21 O -0.434 6.434 22 N -0.238 5.238 23 C 0.018 3.982 24 C -0.137 4.137 25 C -0.202 4.202 26 C -0.202 4.202 27 N -0.211 5.211 28 H 0.283 0.717 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.176 0.824 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.503 15.259 15.515 22.042 hybrid contribution 1.054 0.495 -1.090 1.595 sum -2.449 15.754 14.425 21.500 Atomic orbital electron populations 1.22432 0.99115 0.98392 1.01252 1.20855 0.92558 0.84156 0.98350 1.44246 1.75516 1.10096 1.01343 1.19260 1.31848 1.03923 0.83452 0.90792 1.24761 0.97729 0.99897 0.97437 1.70164 1.26964 1.31600 1.25076 0.86342 0.80213 0.77833 0.82662 1.21519 1.21919 1.20768 1.20952 0.93578 0.94436 0.89544 1.22789 1.02316 0.95466 0.83039 1.46182 1.15670 1.49949 1.25552 1.20201 0.84308 0.80237 0.86341 1.90800 1.28354 1.62468 1.58869 1.20559 0.93871 1.00045 0.98763 1.20056 0.95268 0.83659 0.91591 1.21681 0.96436 1.04437 1.14256 1.16908 0.87886 0.81927 0.79781 1.90846 1.25478 1.78882 1.48166 1.48499 1.07452 1.19950 1.47890 1.21821 0.93375 0.82947 1.00011 1.21619 0.97152 0.97110 0.97798 1.21852 0.98158 0.99228 1.00967 1.21780 1.00545 0.95926 1.01943 1.43789 1.09093 1.17809 1.50414 0.71735 0.96080 0.96700 0.89115 0.89300 0.97775 0.93652 0.93245 0.93828 0.91479 0.91538 0.77027 0.85290 0.87037 0.82362 0.88230 0.89877 0.90727 0.92278 0.92937 0.91827 0.92609 0.91928 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.58 37.15 0.36 -3.14 16 2 C 0.17 3.84 5.64 -4.05 -0.02 3.82 16 3 N -0.59 -13.70 2.54 -173.24 -0.44 -14.14 16 4 C -0.26 -6.58 9.70 -15.06 -0.15 -6.73 16 5 H 0.07 1.86 7.93 -52.49 -0.42 1.45 16 6 C 0.00 -0.01 4.91 -17.43 -0.09 -0.10 16 7 N -0.89 -24.38 8.54 55.49 0.47 -23.91 16 8 Si 0.90 20.94 29.62 -169.99 -5.03 15.91 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.14 2.58 5.82 -4.04 -0.02 2.55 16 13 C 0.09 1.56 5.88 -4.04 -0.02 1.54 16 14 N -0.72 -8.83 5.56 -60.29 -0.33 -9.17 16 15 C 0.51 6.39 7.82 -10.98 -0.09 6.31 16 16 O -0.53 -9.58 16.03 5.56 0.09 -9.49 16 17 C -0.09 -0.66 6.24 -29.03 -0.18 -0.84 16 18 C 0.21 2.17 5.70 -81.68 -0.47 1.71 16 19 C -0.34 -4.32 10.73 -39.56 -0.42 -4.74 16 20 C 0.54 7.87 6.53 -14.99 -0.10 7.77 16 21 O -0.55 -9.79 16.35 5.12 0.08 -9.71 16 22 N -0.41 -4.69 3.52 -63.24 -0.22 -4.91 16 23 C 0.14 1.20 5.82 -4.04 -0.02 1.18 16 24 C -0.12 -1.09 3.13 -90.62 -0.28 -1.37 16 25 C -0.14 -1.70 8.28 37.15 0.31 -1.39 16 26 C -0.14 -0.99 9.19 37.16 0.34 -0.65 16 27 N -0.49 -4.58 7.30 33.67 0.25 -4.34 16 28 H 0.44 2.78 8.96 -182.58 -1.64 1.15 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.31 5.98 -51.93 -0.31 0.00 16 31 H 0.09 2.39 6.28 -51.93 -0.33 2.06 16 32 H 0.09 2.30 5.87 -51.93 -0.31 2.00 16 33 H 0.00 0.08 7.97 -51.93 -0.41 -0.33 16 34 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 37 H 0.07 1.35 5.93 -51.93 -0.31 1.04 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.40 3.30 8.47 -40.82 -0.35 2.96 16 40 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.95 5.73 -51.93 -0.30 0.65 16 49 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -35.13 408.93 -9.66 -44.78 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -9.82 Total: 2.89 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.86 Total: 5.91 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.28 Total: -56.46 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.17 Total: -19.20 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.13 -9.66 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480986718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.806 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds