Wall clock time and date at job start Tue Mar 31 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47382 * 2 1 4 4 C 1.36939 * 120.00050 * 264.29125 * 3 2 1 5 5 H 1.08002 * 120.00234 * 188.63743 * 4 3 2 6 6 C 1.38811 * 120.00048 * 8.63692 * 4 3 2 7 7 N 1.31626 * 120.00122 * 24.60114 * 6 4 3 8 8 Si 1.86802 * 120.00233 * 204.60442 * 6 4 3 9 9 H 1.48500 * 109.46920 * 85.02382 * 8 6 4 10 10 H 1.48498 * 109.47095 * 205.02416 * 8 6 4 11 11 H 1.48503 * 109.46895 * 325.02439 * 8 6 4 12 12 C 1.46497 * 120.00151 * 84.28835 * 3 2 1 13 13 C 1.53005 * 109.47145 * 270.00453 * 12 3 2 14 14 N 1.46497 * 109.47145 * 179.97438 * 13 12 3 15 15 C 1.34781 * 120.00012 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99856 * 359.72621 * 15 14 13 17 17 C 1.50702 * 119.99912 * 179.72425 * 15 14 13 18 18 C 1.50698 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.34822 * 125.78072 * 95.02394 * 18 17 15 20 20 C 1.41469 * 108.08811 * 179.97438 * 19 18 17 21 21 O 1.21772 * 126.19315 * 180.02562 * 20 19 18 22 22 N 1.34874 * 107.61073 * 0.02562 * 20 19 18 23 23 C 1.46498 * 126.16088 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47005 * 274.97205 * 23 22 20 25 25 C 1.52992 * 109.47343 * 64.99935 * 24 23 22 26 26 C 1.53007 * 109.47308 * 185.00274 * 24 23 22 27 27 N 1.36604 * 125.77053 * 274.71331 * 18 17 15 28 28 H 0.97005 * 125.91103 * 359.96418 * 27 18 17 29 29 H 1.08997 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47207 * 300.00217 * 1 2 3 31 31 H 1.09004 * 109.47415 * 59.99928 * 1 2 3 32 32 H 1.09003 * 109.47207 * 239.99783 * 2 1 3 33 33 H 1.08997 * 109.47662 * 119.99833 * 2 1 3 34 34 H 0.97000 * 120.00369 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47284 * 150.00165 * 12 3 2 36 36 H 1.08996 * 109.46939 * 30.00232 * 12 3 2 37 37 H 1.09001 * 109.47265 * 59.99700 * 13 12 3 38 38 H 1.09005 * 109.46924 * 299.99501 * 13 12 3 39 39 H 0.97002 * 120.00229 * 359.72183 * 14 13 12 40 40 H 1.09005 * 109.46640 * 299.99950 * 17 15 14 41 41 H 1.08993 * 109.47038 * 59.99892 * 17 15 14 42 42 H 1.08000 * 125.95057 * 0.02562 * 19 18 17 43 43 H 1.09002 * 109.47720 * 34.96932 * 23 22 20 44 44 H 1.08997 * 109.47187 * 154.97549 * 23 22 20 45 45 H 1.09003 * 109.47250 * 305.00033 * 24 23 22 46 46 H 1.09002 * 109.47186 * 60.00306 * 25 24 23 47 47 H 1.09002 * 109.47618 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47281 * 300.00499 * 25 24 23 49 49 H 1.09006 * 109.46719 * 59.99807 * 26 24 23 50 50 H 1.08993 * 109.47020 * 180.02562 * 26 24 23 51 51 H 1.08993 * 109.46625 * 300.00034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1714 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4857 -2.4603 8 14 3.0770 1.7731 -3.9088 9 1 4.3045 0.9377 -3.9309 10 1 2.2688 1.4976 -5.1238 11 1 3.4556 3.2088 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8474 1.5584 14 7 0.9587 3.5796 2.8211 15 6 -0.0786 4.3041 3.2854 16 8 -1.1137 4.3539 2.6555 17 6 0.0478 5.0523 4.5875 18 6 -1.2417 5.7758 4.8783 19 6 -2.2474 5.3154 5.6492 20 6 -3.2703 6.2925 5.6666 21 8 -4.3291 6.2145 6.2629 22 7 -2.8604 7.3259 4.9030 23 6 -3.6089 8.5579 4.6418 24 6 -4.5674 8.3337 3.4706 25 6 -5.6205 7.2963 3.8647 26 6 -5.2580 9.6525 3.1170 27 7 -1.5869 7.0119 4.4102 28 1 -1.0449 7.5741 3.8348 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.8971 0.0501 -3.3039 35 1 2.9552 2.8371 1.1838 36 1 2.3579 1.4133 2.0694 37 1 0.0220 2.1242 1.6369 38 1 0.6194 3.5481 0.7513 39 1 1.7867 3.5401 3.3248 40 1 0.2584 4.3479 5.3923 41 1 0.8613 5.7740 4.5143 42 1 -2.2680 4.3664 6.1643 43 1 -4.1783 8.8324 5.5298 44 1 -2.9135 9.3598 4.3938 45 1 -4.0081 7.9736 2.6071 46 1 -6.1799 7.6563 4.7282 47 1 -6.3031 7.1362 3.0302 48 1 -5.1285 6.3568 4.1166 49 1 -4.5076 10.3916 2.8361 50 1 -5.9412 9.4926 2.2829 51 1 -5.8173 10.0125 3.9804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480986718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:23 Heat of formation + Delta-G solvation = -0.005602 kcal Electronic energy + Delta-G solvation = -29547.890044 eV Core-core repulsion = 25484.531772 eV Total energy + Delta-G solvation = -4063.358272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.66197 -40.61851 -38.30963 -38.03733 -37.42413 -35.75488 -34.01794 -33.25867 -31.59974 -30.94304 -30.76997 -28.98137 -28.16743 -26.75151 -25.79556 -23.60077 -22.33001 -22.15683 -22.00476 -21.28484 -21.15422 -19.05287 -18.72757 -18.10715 -17.10206 -17.02512 -16.80173 -16.73591 -16.52577 -15.88126 -15.77916 -15.57269 -15.24604 -14.89875 -14.66837 -14.53329 -14.44351 -14.21372 -13.86166 -13.80561 -13.70660 -13.47356 -13.25865 -13.20454 -13.06661 -12.94377 -12.80017 -12.67077 -12.28424 -12.25635 -12.16729 -11.97226 -11.80931 -11.79981 -11.53069 -11.32909 -11.01641 -10.85071 -10.36801 -10.14666 -9.97778 -8.90016 -8.86470 -7.79399 -5.12710 0.50697 0.76775 1.50110 1.53152 1.59304 1.68898 2.12417 2.41072 2.59758 2.83585 3.30189 3.44004 3.67541 3.73493 3.74737 3.96811 4.00982 4.19433 4.24299 4.30732 4.36526 4.40907 4.56440 4.59160 4.60232 4.69659 4.72590 4.74676 4.81117 4.90503 4.96991 4.97916 5.00420 5.10710 5.15175 5.16933 5.23546 5.26531 5.30875 5.36338 5.39096 5.54808 5.65509 5.82121 6.14958 6.16235 6.37422 6.58711 6.67801 7.22197 7.27523 7.37386 7.93865 8.32596 9.22295 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002177 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.292701 B =12861.179756 C =13604.615195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 N -0.608 5.608 4 C -0.257 4.257 5 H 0.078 0.922 6 C -0.054 4.054 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.274 1.274 12 C 0.144 3.856 13 C 0.111 3.889 14 N -0.705 5.705 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.074 4.074 18 C 0.228 3.772 19 C -0.374 4.374 20 C 0.513 3.487 21 O -0.603 6.603 22 N -0.414 5.414 23 C 0.133 3.867 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.138 4.138 27 N -0.472 5.472 28 H 0.454 0.546 29 H 0.031 0.969 30 H 0.022 0.978 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.245 0.755 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.421 0.579 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 17.168 17.224 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 N -0.329 5.329 4 C -0.387 4.387 5 H 0.095 0.905 6 C -0.249 4.249 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.214 1.214 10 H -0.231 1.231 11 H -0.199 1.199 12 C 0.017 3.983 13 C -0.016 4.016 14 N -0.359 5.359 15 C 0.292 3.708 16 O -0.470 6.470 17 C -0.115 4.115 18 C 0.107 3.893 19 C -0.405 4.405 20 C 0.313 3.687 21 O -0.487 6.487 22 N -0.235 5.235 23 C 0.014 3.986 24 C -0.132 4.132 25 C -0.199 4.199 26 C -0.195 4.195 27 N -0.195 5.195 28 H 0.303 0.697 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.259 0.741 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.631 17.373 16.860 24.217 hybrid contribution 0.202 -0.100 -1.463 1.480 sum -0.429 17.273 15.398 23.144 Atomic orbital electron populations 1.22237 0.99306 0.98607 0.99667 1.20727 0.92331 0.84554 0.98094 1.44425 1.75594 1.10517 1.02407 1.19546 1.30849 1.03767 0.84536 0.90452 1.25420 0.98775 1.00759 0.99920 1.70339 1.28226 1.32999 1.24934 0.85433 0.78573 0.77870 0.79472 1.21438 1.23145 1.19863 1.21124 0.93856 0.95131 0.88164 1.22095 1.00932 0.94237 0.84354 1.45827 1.17007 1.49125 1.23905 1.21042 0.82960 0.79444 0.87365 1.90801 1.30715 1.64454 1.61040 1.20679 0.93567 1.01024 0.96189 1.20411 0.95624 0.83449 0.89811 1.21779 0.97292 1.04821 1.16600 1.17255 0.87885 0.83200 0.80338 1.90789 1.27306 1.80105 1.50518 1.48552 1.08107 1.19967 1.46906 1.22082 0.94032 0.82846 0.99662 1.21574 0.96530 0.97611 0.97489 1.21806 0.98771 0.98445 1.00914 1.21735 1.00929 0.94707 1.02166 1.43956 1.08179 1.17866 1.49454 0.69712 0.94949 0.95919 0.92883 0.92362 0.94995 0.94573 0.91454 0.90889 0.94417 0.95367 0.74082 0.81603 0.81872 0.82332 0.88448 0.85952 0.91922 0.92575 0.92688 0.95496 0.90503 0.92163 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 9.58 71.98 0.69 -5.72 16 2 C 0.17 7.71 5.64 86.38 0.49 8.20 16 3 N -0.61 -27.59 2.54 -702.02 -1.78 -29.37 16 4 C -0.26 -13.11 9.70 84.03 0.82 -12.30 16 5 H 0.08 3.81 7.93 -2.91 -0.02 3.79 16 6 C -0.05 -2.86 4.91 84.86 0.42 -2.45 16 7 N -0.92 -51.46 8.54 21.65 0.18 -51.28 16 8 Si 0.96 43.43 29.62 68.60 2.03 45.47 16 9 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.14 4.80 5.82 86.38 0.50 5.31 16 13 C 0.11 3.74 5.88 86.38 0.51 4.25 16 14 N -0.71 -14.98 5.56 -463.05 -2.57 -17.55 16 15 C 0.51 11.39 7.82 87.66 0.69 12.08 16 16 O -0.59 -21.07 16.03 -3.03 -0.05 -21.12 16 17 C -0.07 -0.74 6.24 29.10 0.18 -0.55 16 18 C 0.23 4.11 5.70 41.03 0.23 4.35 16 19 C -0.37 -9.53 10.73 22.28 0.24 -9.29 16 20 C 0.51 15.55 6.53 85.02 0.56 16.10 16 21 O -0.60 -22.77 16.35 -4.58 -0.07 -22.85 16 22 N -0.41 -9.08 3.52 -472.13 -1.66 -10.74 16 23 C 0.13 2.13 5.82 86.38 0.50 2.63 16 24 C -0.11 -2.03 3.13 -10.79 -0.03 -2.06 16 25 C -0.14 -3.53 8.28 71.98 0.60 -2.93 16 26 C -0.14 -1.65 9.19 71.98 0.66 -0.98 16 27 N -0.47 -7.71 7.30 -47.38 -0.35 -8.06 16 28 H 0.45 4.16 8.96 -213.30 -1.91 2.25 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.02 0.97 5.98 -2.39 -0.01 0.95 16 31 H 0.05 2.87 6.28 -2.38 -0.01 2.85 16 32 H 0.06 3.05 5.87 -2.39 -0.01 3.03 16 33 H 0.03 1.27 7.97 -2.39 -0.02 1.25 16 34 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 36 H 0.07 2.04 7.95 -2.39 -0.02 2.02 16 37 H 0.04 1.50 5.93 -2.39 -0.01 1.49 16 38 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 39 H 0.42 4.89 8.47 -92.71 -0.79 4.10 16 40 H 0.17 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.03 0.86 5.73 -2.39 -0.01 0.84 16 49 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 51 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -83.93 408.93 1.02 -82.91 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -1.76 Total: 15.95 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 7.04 Total: 16.64 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -6.18 Total: -117.00 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.12 Total: -43.97 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.47 kcal Total: -83.93 1.02 -82.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480986718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.906 kcal (2) G-P(sol) polarization free energy of solvation -83.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds