Wall clock time and date at job start Tue Mar 31 2020 22:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47445 * 110.99836 * 2 1 4 4 C 1.54322 * 107.23290 * 123.25877 * 3 2 1 5 5 C 1.55256 * 103.08440 * 22.20443 * 4 3 2 6 6 C 1.47846 * 111.00010 * 120.84242 * 2 1 3 7 7 H 1.09000 * 110.37553 * 332.57434 * 6 2 1 8 8 C 1.50699 * 110.37449 * 94.81008 * 6 2 1 9 9 O 1.21288 * 119.99779 * 17.04467 * 8 6 2 10 10 N 1.34773 * 120.00129 * 197.04779 * 8 6 2 11 11 C 1.46504 * 120.00135 * 180.02562 * 10 8 6 12 12 H 1.08997 * 109.49849 * 324.91557 * 11 10 8 13 13 C 1.53119 * 109.50378 * 84.99558 * 11 10 8 14 14 C 1.53121 * 109.15914 * 177.63566 * 13 11 10 15 15 C 1.53040 * 109.27937 * 302.34798 * 14 13 11 16 16 N 1.46851 * 109.52400 * 59.17623 * 15 14 13 17 17 C 1.46896 * 110.99872 * 174.16130 * 16 15 14 18 18 C 1.50700 * 109.46942 * 66.04706 * 17 16 15 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31414 * 119.99893 * 359.72318 * 23 21 20 25 25 Si 1.86801 * 119.99957 * 179.72309 * 23 21 20 26 26 H 1.48494 * 109.47230 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46780 * 119.99924 * 25 23 21 28 28 H 1.48495 * 109.46909 * 239.99525 * 25 23 21 29 29 C 1.46844 * 111.19549 * 298.26095 * 16 15 14 30 30 H 1.08997 * 109.47476 * 299.15671 * 1 2 3 31 31 H 1.09001 * 109.47363 * 59.15962 * 1 2 3 32 32 H 1.09001 * 109.47147 * 179.15512 * 1 2 3 33 33 H 1.09002 * 109.88794 * 242.66069 * 3 2 1 34 34 H 1.08997 * 109.88914 * 3.85145 * 3 2 1 35 35 H 1.09004 * 110.70395 * 140.66377 * 4 3 2 36 36 H 1.09000 * 110.70477 * 263.72465 * 4 3 2 37 37 H 1.09000 * 111.08933 * 206.38611 * 5 4 3 38 38 H 1.09005 * 110.94675 * 82.53516 * 5 4 3 39 39 H 0.96995 * 119.99987 * 359.97438 * 10 8 6 40 40 H 1.08995 * 109.52356 * 57.72773 * 13 11 10 41 41 H 1.08998 * 109.57386 * 297.57113 * 13 11 10 42 42 H 1.08998 * 109.50720 * 182.40108 * 14 13 11 43 43 H 1.09004 * 109.53428 * 62.30391 * 14 13 11 44 44 H 1.08998 * 109.45841 * 299.16311 * 15 14 13 45 45 H 1.08994 * 109.45235 * 179.18876 * 15 14 13 46 46 H 1.08994 * 109.47346 * 306.05012 * 17 16 15 47 47 H 1.08998 * 109.47279 * 186.04684 * 17 16 15 48 48 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 49 49 H 0.97004 * 119.99542 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.45981 * 181.75660 * 29 16 15 51 51 H 1.09002 * 109.46484 * 301.72096 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3043 0.0437 1.5467 6 6 1.9988 -0.7076 1.1851 7 1 1.2881 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8474 9 8 2.3940 -2.4889 -0.3118 10 7 2.4571 -3.0502 1.8336 11 6 2.7479 -4.4481 1.5054 12 1 2.2229 -4.7239 0.5910 13 6 4.2555 -4.6224 1.3018 14 6 4.5571 -6.0965 1.0176 15 6 4.0420 -6.9505 2.1784 16 7 2.5955 -6.7490 2.3318 17 6 2.0423 -7.6564 3.3460 18 6 2.5999 -7.2970 4.6992 19 8 3.3816 -6.3760 4.8080 20 7 2.2299 -7.9991 5.7886 21 6 2.7368 -7.6719 7.0197 22 1 3.4329 -6.8518 7.1165 23 6 2.3598 -8.3993 8.1419 24 7 1.5133 -9.3976 8.0240 25 14 3.0564 -7.9584 9.8182 26 1 3.9814 -6.8048 9.6819 27 1 1.9463 -7.5977 10.7361 28 1 3.7955 -9.1227 10.3688 29 6 2.2854 -5.3499 2.6521 30 1 -0.3634 0.5007 0.8974 31 1 -0.3634 0.5268 -0.8823 32 1 -0.3633 -1.0276 -0.0152 33 1 2.5697 1.5540 -0.9105 34 1 1.1755 2.0892 0.0688 35 1 3.8000 2.1034 0.9905 36 1 2.3752 1.9575 2.0685 37 1 3.5470 -0.0809 2.6020 38 1 4.1310 -0.2841 0.9163 39 1 2.3802 -2.7756 2.7607 40 1 4.7833 -4.3097 2.2027 41 1 4.5827 -4.0145 0.4584 42 1 5.6333 -6.2343 0.9139 43 1 4.0610 -6.3988 0.0953 44 1 4.5490 -6.6575 3.0977 45 1 4.2424 -8.0019 1.9723 46 1 2.3143 -8.6832 3.1020 47 1 0.9565 -7.5626 3.3639 48 1 1.6050 -8.7359 5.7016 49 1 1.2499 -9.9052 8.8075 50 1 1.2099 -5.2388 2.7902 51 1 2.8006 -5.0644 3.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481536878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:14 Heat of formation + Delta-G solvation = -59.336697 kcal Electronic energy + Delta-G solvation = -30345.417978 eV Core-core repulsion = 26279.486917 eV Total energy + Delta-G solvation = -4065.931061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39977 -39.46444 -38.23662 -37.07560 -34.59867 -33.88816 -32.52492 -32.29298 -31.34395 -30.39042 -28.73233 -27.30763 -25.96296 -24.71624 -23.40858 -22.72953 -21.80632 -21.30868 -20.09144 -19.70148 -19.16815 -17.92913 -17.45027 -16.61036 -16.04519 -15.84429 -15.50176 -15.01520 -14.85813 -14.65162 -14.48925 -14.24310 -14.07458 -13.96747 -13.67529 -13.54697 -13.40541 -13.06404 -12.96235 -12.82610 -12.44067 -12.24364 -11.89656 -11.81849 -11.61632 -11.56932 -11.50870 -11.29625 -11.17846 -11.09299 -10.85080 -10.57234 -10.51787 -10.41879 -10.32375 -10.22909 -9.65119 -9.53906 -9.25700 -8.88908 -8.56914 -8.06152 -7.44392 -6.51405 -3.92991 2.68705 2.99240 3.07950 3.19949 3.26171 3.76147 3.81951 4.09125 4.22005 4.33110 4.41872 4.58163 4.82066 4.82716 4.94631 5.06204 5.08682 5.09505 5.14891 5.17084 5.22393 5.28744 5.37159 5.44108 5.47530 5.49214 5.62714 5.68547 5.75591 5.81046 5.83938 5.85799 5.96006 6.01191 6.12952 6.15482 6.22653 6.32913 6.39897 6.52464 6.54821 6.63254 6.72077 6.74436 7.33122 7.44024 7.45280 7.63346 7.95075 8.36544 8.49412 9.06807 9.43085 9.93157 10.65042 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.002454 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.443936 B =11407.148850 C =12412.756215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.512 5.512 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.117 4.117 6 C 0.053 3.947 7 H 0.076 0.924 8 C 0.522 3.478 9 O -0.518 6.518 10 N -0.725 5.725 11 C 0.154 3.846 12 H 0.088 0.912 13 C -0.126 4.126 14 C -0.109 4.109 15 C 0.040 3.960 16 N -0.509 5.509 17 C 0.042 3.958 18 C 0.406 3.594 19 O -0.595 6.595 20 N -0.555 5.555 21 C -0.302 4.302 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.897 5.897 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.029 3.971 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.398 0.602 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.393 0.607 49 H 0.272 0.728 50 H 0.065 0.935 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 15.788 -12.359 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.059 4.059 7 H 0.094 0.906 8 C 0.306 3.694 9 O -0.392 6.392 10 N -0.377 5.377 11 C 0.049 3.951 12 H 0.106 0.894 13 C -0.165 4.165 14 C -0.147 4.147 15 C -0.088 4.088 16 N -0.233 5.233 17 C -0.090 4.090 18 C 0.191 3.809 19 O -0.482 6.482 20 N -0.190 5.190 21 C -0.432 4.432 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.538 5.538 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.100 4.100 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.227 0.773 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.126 15.638 -13.921 20.938 hybrid contribution -0.186 0.292 2.904 2.924 sum -0.059 15.930 -11.018 19.369 Atomic orbital electron populations 1.22561 0.87021 1.02511 1.00557 1.63073 1.08069 1.13603 1.38830 1.22864 0.98016 0.88757 0.98769 1.22813 1.00272 0.96706 0.98147 1.22678 0.96193 0.94284 1.02351 1.22542 0.97997 0.92689 0.92715 0.90625 1.20254 0.76881 0.86627 0.85636 1.90687 1.48990 1.80135 1.19418 1.46057 1.72992 1.09209 1.09485 1.20888 0.95610 0.79350 0.99218 0.89397 1.21903 0.95915 0.97000 1.01634 1.21487 1.00185 0.94261 0.98815 1.22270 0.88297 0.99292 0.98945 1.62327 1.13689 1.04291 1.42953 1.22045 1.00324 0.97686 0.88915 1.21108 0.86793 0.86328 0.86625 1.90376 1.39371 1.32516 1.85959 1.42079 1.40460 1.30014 1.06484 1.19750 1.24728 1.15603 0.83126 0.87921 1.25298 0.96658 0.95711 1.00172 1.69620 1.32808 1.19930 1.31403 0.85810 0.78714 0.78569 0.81312 1.19251 1.20674 1.20663 1.22560 1.00834 0.88308 0.98278 0.95444 0.90977 0.91234 0.90132 0.92405 0.90204 0.91147 0.89784 0.89920 0.76827 0.91857 0.92003 0.91688 0.91575 0.91312 0.91589 0.89161 0.89277 0.77343 0.91765 0.91662 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 60.06 0.55 0.75 16 2 N -0.51 -5.50 4.68 -232.98 -1.09 -6.59 16 3 C 0.04 0.35 6.90 -2.83 -0.02 0.33 16 4 C -0.14 -0.97 6.94 -24.84 -0.17 -1.14 16 5 C -0.12 -0.99 6.49 -24.53 -0.16 -1.15 16 6 C 0.05 0.54 2.84 -67.34 -0.19 0.35 16 7 H 0.08 0.67 7.77 -51.93 -0.40 0.27 16 8 C 0.52 7.00 7.09 -10.99 -0.08 6.92 16 9 O -0.52 -9.02 16.24 5.55 0.09 -8.93 16 10 N -0.73 -9.11 5.08 -53.73 -0.27 -9.38 16 11 C 0.15 2.23 2.61 -67.85 -0.18 2.05 16 12 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.13 -1.79 5.58 -26.61 -0.15 -1.94 16 14 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 15 C 0.04 0.64 5.09 -3.83 -0.02 0.62 16 16 N -0.51 -8.34 4.86 -236.12 -1.15 -9.48 16 17 C 0.04 0.72 5.86 -4.98 -0.03 0.69 16 18 C 0.41 8.88 7.20 -10.98 -0.08 8.81 16 19 O -0.59 -14.39 11.20 5.55 0.06 -14.32 16 20 N -0.56 -13.41 5.29 -10.96 -0.06 -13.47 16 21 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 22 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 25 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 C 0.03 0.46 4.45 -3.84 -0.02 0.44 16 30 H 0.03 0.21 8.09 -51.93 -0.42 -0.21 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.39 7.58 -51.93 -0.39 0.00 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.40 4.28 8.60 -40.82 -0.35 3.93 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.32 6.00 -51.93 -0.31 1.00 16 45 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 46 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 47 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 49 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 50 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 51 H 0.09 1.69 5.36 -51.93 -0.28 1.41 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -31.36 398.94 -10.36 -41.72 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -8.71 Total: 14.74 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.95 Total: 7.35 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -1.84 Total: -61.94 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.15 Total: -23.25 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.36 -10.36 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481536878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.613 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds