Wall clock time and date at job start Tue Mar 31 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47445 * 110.99836 * 2 1 4 4 C 1.54322 * 107.23290 * 123.25877 * 3 2 1 5 5 C 1.55256 * 103.08440 * 22.20443 * 4 3 2 6 6 C 1.47846 * 111.00010 * 120.84242 * 2 1 3 7 7 H 1.09000 * 110.37553 * 332.57434 * 6 2 1 8 8 C 1.50699 * 110.37449 * 94.81008 * 6 2 1 9 9 O 1.21288 * 119.99779 * 17.04467 * 8 6 2 10 10 N 1.34773 * 120.00129 * 197.04779 * 8 6 2 11 11 C 1.46504 * 120.00135 * 180.02562 * 10 8 6 12 12 H 1.08997 * 109.49849 * 324.91557 * 11 10 8 13 13 C 1.53119 * 109.50378 * 84.99558 * 11 10 8 14 14 C 1.53121 * 109.15914 * 177.63566 * 13 11 10 15 15 C 1.53040 * 109.27937 * 302.34798 * 14 13 11 16 16 N 1.46851 * 109.52400 * 59.17623 * 15 14 13 17 17 C 1.46896 * 110.99872 * 174.16130 * 16 15 14 18 18 C 1.50700 * 109.46942 * 66.04706 * 17 16 15 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31414 * 119.99893 * 359.72318 * 23 21 20 25 25 Si 1.86801 * 119.99957 * 179.72309 * 23 21 20 26 26 H 1.48494 * 109.47230 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46780 * 119.99924 * 25 23 21 28 28 H 1.48495 * 109.46909 * 239.99525 * 25 23 21 29 29 C 1.46844 * 111.19549 * 298.26095 * 16 15 14 30 30 H 1.08997 * 109.47476 * 299.15671 * 1 2 3 31 31 H 1.09001 * 109.47363 * 59.15962 * 1 2 3 32 32 H 1.09001 * 109.47147 * 179.15512 * 1 2 3 33 33 H 1.09002 * 109.88794 * 242.66069 * 3 2 1 34 34 H 1.08997 * 109.88914 * 3.85145 * 3 2 1 35 35 H 1.09004 * 110.70395 * 140.66377 * 4 3 2 36 36 H 1.09000 * 110.70477 * 263.72465 * 4 3 2 37 37 H 1.09000 * 111.08933 * 206.38611 * 5 4 3 38 38 H 1.09005 * 110.94675 * 82.53516 * 5 4 3 39 39 H 0.96995 * 119.99987 * 359.97438 * 10 8 6 40 40 H 1.08995 * 109.52356 * 57.72773 * 13 11 10 41 41 H 1.08998 * 109.57386 * 297.57113 * 13 11 10 42 42 H 1.08998 * 109.50720 * 182.40108 * 14 13 11 43 43 H 1.09004 * 109.53428 * 62.30391 * 14 13 11 44 44 H 1.08998 * 109.45841 * 299.16311 * 15 14 13 45 45 H 1.08994 * 109.45235 * 179.18876 * 15 14 13 46 46 H 1.08994 * 109.47346 * 306.05012 * 17 16 15 47 47 H 1.08998 * 109.47279 * 186.04684 * 17 16 15 48 48 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 49 49 H 0.97004 * 119.99542 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.45981 * 181.75660 * 29 16 15 51 51 H 1.09002 * 109.46484 * 301.72096 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3043 0.0437 1.5467 6 6 1.9988 -0.7076 1.1851 7 1 1.2881 -0.6518 2.0096 8 6 2.2974 -2.1456 0.8474 9 8 2.3940 -2.4889 -0.3118 10 7 2.4571 -3.0502 1.8336 11 6 2.7479 -4.4481 1.5054 12 1 2.2229 -4.7239 0.5910 13 6 4.2555 -4.6224 1.3018 14 6 4.5571 -6.0965 1.0176 15 6 4.0420 -6.9505 2.1784 16 7 2.5955 -6.7490 2.3318 17 6 2.0423 -7.6564 3.3460 18 6 2.5999 -7.2970 4.6992 19 8 3.3816 -6.3760 4.8080 20 7 2.2299 -7.9991 5.7886 21 6 2.7368 -7.6719 7.0197 22 1 3.4329 -6.8518 7.1165 23 6 2.3598 -8.3993 8.1419 24 7 1.5133 -9.3976 8.0240 25 14 3.0564 -7.9584 9.8182 26 1 3.9814 -6.8048 9.6819 27 1 1.9463 -7.5977 10.7361 28 1 3.7955 -9.1227 10.3688 29 6 2.2854 -5.3499 2.6521 30 1 -0.3634 0.5007 0.8974 31 1 -0.3634 0.5268 -0.8823 32 1 -0.3633 -1.0276 -0.0152 33 1 2.5697 1.5540 -0.9105 34 1 1.1755 2.0892 0.0688 35 1 3.8000 2.1034 0.9905 36 1 2.3752 1.9575 2.0685 37 1 3.5470 -0.0809 2.6020 38 1 4.1310 -0.2841 0.9163 39 1 2.3802 -2.7756 2.7607 40 1 4.7833 -4.3097 2.2027 41 1 4.5827 -4.0145 0.4584 42 1 5.6333 -6.2343 0.9139 43 1 4.0610 -6.3988 0.0953 44 1 4.5490 -6.6575 3.0977 45 1 4.2424 -8.0019 1.9723 46 1 2.3143 -8.6832 3.1020 47 1 0.9565 -7.5626 3.3639 48 1 1.6050 -8.7359 5.7016 49 1 1.2499 -9.9052 8.8075 50 1 1.2099 -5.2388 2.7902 51 1 2.8006 -5.0644 3.5692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481536878.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:13 Heat of formation + Delta-G solvation = -83.737662 kcal Electronic energy + Delta-G solvation = -30346.476084 eV Core-core repulsion = 26279.486917 eV Total energy + Delta-G solvation = -4066.989167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48453 -40.82208 -39.38064 -38.43000 -36.13582 -35.48512 -33.76036 -33.25410 -33.04028 -31.38670 -29.74425 -28.82362 -26.65289 -26.51023 -24.48472 -24.09394 -22.79485 -22.01446 -21.24319 -21.14682 -20.60129 -19.79247 -18.43436 -17.78184 -17.57667 -16.88544 -16.58650 -16.39584 -16.17004 -16.00325 -15.75830 -15.61704 -15.53618 -15.12865 -14.94743 -14.57413 -14.42404 -14.27591 -14.11642 -13.71262 -13.60388 -13.47528 -13.28337 -13.09201 -13.01112 -12.56514 -12.49231 -12.42095 -12.32978 -12.22429 -12.12654 -12.11319 -11.85829 -11.77275 -11.68030 -11.49720 -11.34904 -10.94518 -10.73982 -10.04536 -9.99048 -9.29914 -9.01348 -8.46416 -5.96086 1.34380 1.40887 1.54010 1.64694 1.98348 2.01559 2.28188 2.96254 3.16634 3.19947 3.25396 3.53116 3.63114 3.81703 3.88991 3.96507 4.03287 4.08909 4.17640 4.18096 4.40836 4.41373 4.44194 4.47262 4.52704 4.54546 4.55560 4.66571 4.74444 4.76060 4.87150 4.92704 4.93789 4.96238 4.97935 5.04287 5.05455 5.15714 5.19769 5.27252 5.38387 5.42616 5.48898 5.84477 5.89383 6.05121 6.05426 6.09143 6.57725 6.61273 7.11401 7.31217 7.55119 8.09009 8.69086 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.002454 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.443936 B =11407.148850 C =12412.756215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.116 4.116 6 C 0.055 3.945 7 H 0.094 0.906 8 C 0.521 3.479 9 O -0.563 6.563 10 N -0.718 5.718 11 C 0.163 3.837 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.103 4.103 15 C 0.042 3.958 16 N -0.504 5.504 17 C 0.050 3.950 18 C 0.410 3.590 19 O -0.617 6.617 20 N -0.570 5.570 21 C -0.329 4.329 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.037 3.963 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.069 0.931 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 16.806 -12.209 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.085 4.085 4 C -0.170 4.170 5 C -0.154 4.154 6 C -0.057 4.057 7 H 0.112 0.888 8 C 0.307 3.693 9 O -0.440 6.440 10 N -0.370 5.370 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.159 4.159 14 C -0.141 4.141 15 C -0.086 4.086 16 N -0.226 5.226 17 C -0.082 4.082 18 C 0.197 3.803 19 O -0.505 6.505 20 N -0.206 5.206 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.199 1.199 29 C -0.091 4.091 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.244 0.756 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.109 16.671 -13.767 21.621 hybrid contribution -0.102 0.002 2.753 2.755 sum -0.211 16.672 -11.014 19.983 Atomic orbital electron populations 1.22544 0.86363 1.01732 1.01810 1.62982 1.08979 1.15212 1.39399 1.22910 0.98733 0.87732 0.99164 1.22802 1.00630 0.95579 0.98020 1.22703 0.94627 0.95203 1.02902 1.22551 0.99407 0.90496 0.93207 0.88813 1.20897 0.75580 0.87883 0.84895 1.90660 1.51089 1.81056 1.21172 1.45993 1.72476 1.08463 1.10091 1.20666 0.95558 0.80158 0.97809 0.90802 1.21836 0.95536 0.97412 1.01078 1.21466 1.01291 0.93328 0.98025 1.22265 0.87664 1.00420 0.98259 1.62412 1.13953 1.04346 1.41937 1.22142 1.01282 0.98909 0.85855 1.22065 0.85475 0.85003 0.87779 1.90387 1.40114 1.33317 1.86716 1.42148 1.41246 1.30796 1.06427 1.19676 1.25498 1.15853 0.84861 0.90216 1.26026 0.96782 0.95469 1.03046 1.69681 1.33437 1.20459 1.32449 0.84906 0.78144 0.78216 0.77308 1.19695 1.19719 1.19875 1.22436 1.00694 0.88414 0.97592 0.93721 0.90165 0.93006 0.90816 0.90745 0.89020 0.89561 0.88210 0.91680 0.75643 0.92628 0.92206 0.90000 0.90879 0.94550 0.90362 0.87021 0.87258 0.77065 0.91349 0.91264 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.12 127.69 1.17 1.57 16 2 N -0.54 -11.09 4.68 -891.00 -4.17 -15.26 16 3 C 0.04 0.60 6.90 86.65 0.60 1.20 16 4 C -0.13 -1.50 6.94 31.82 0.22 -1.28 16 5 C -0.12 -1.80 6.49 32.02 0.21 -1.59 16 6 C 0.06 1.08 2.84 44.64 0.13 1.21 16 7 H 0.09 1.48 7.77 -2.39 -0.02 1.46 16 8 C 0.52 13.91 7.09 87.66 0.62 14.53 16 9 O -0.56 -19.89 16.24 -3.05 -0.05 -19.94 16 10 N -0.72 -17.87 5.08 -442.29 -2.25 -20.12 16 11 C 0.16 4.71 2.61 45.04 0.12 4.83 16 12 H 0.07 2.39 7.58 -2.39 -0.02 2.38 16 13 C -0.12 -3.39 5.58 30.67 0.17 -3.21 16 14 C -0.10 -2.74 6.09 30.65 0.19 -2.56 16 15 C 0.04 1.31 5.09 86.33 0.44 1.75 16 16 N -0.50 -15.99 4.86 -900.96 -4.38 -20.36 16 17 C 0.05 1.65 5.86 85.56 0.50 2.15 16 18 C 0.41 17.99 7.20 87.66 0.63 18.62 16 19 O -0.62 -30.40 11.20 -3.07 -0.03 -30.43 16 20 N -0.57 -27.80 5.29 -306.98 -1.62 -29.42 16 21 C -0.33 -17.89 9.68 84.04 0.81 -17.08 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 24 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 25 Si 0.99 41.73 29.55 68.60 2.03 43.76 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 C 0.04 1.18 4.45 86.32 0.38 1.56 16 30 H 0.04 0.59 8.09 -2.39 -0.02 0.58 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 0.82 7.58 -2.39 -0.02 0.81 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.24 8.05 -2.38 -0.02 1.22 16 39 H 0.41 8.57 8.60 -92.71 -0.80 7.77 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.04 1.40 6.00 -2.39 -0.01 1.38 16 45 H 0.08 2.25 8.06 -2.39 -0.02 2.23 16 46 H 0.11 3.27 8.06 -2.39 -0.02 3.25 16 47 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 49 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 50 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 51 H 0.06 2.44 5.36 -2.39 -0.01 2.42 16 Total: -1.00 -68.60 398.94 -4.13 -72.74 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.59 Total: 45.82 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.65 Total: 21.47 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -12.14 Total: -133.40 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.08 Total: -50.37 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -68.60 -4.13 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481536878.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.002 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds