Wall clock time and date at job start Tue Mar 31 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47843 * 110.99640 * 2 1 4 4 C 1.54916 * 104.79337 * 146.36598 * 3 2 1 5 5 C 1.55398 * 101.74107 * 323.02060 * 4 3 2 6 6 H 1.09005 * 110.67856 * 277.17709 * 5 4 3 7 7 C 1.52992 * 110.84620 * 153.86232 * 5 4 3 8 8 C 1.50700 * 109.47249 * 180.02562 * 7 5 4 9 9 O 1.21284 * 119.99934 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00217 * 179.97438 * 8 7 5 11 11 C 1.46503 * 120.00089 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.27239 * 32.91106 * 11 10 8 13 13 C 1.54599 * 110.30687 * 270.71689 * 11 10 8 14 14 C 1.54939 * 102.91939 * 219.12747 * 13 11 10 15 15 N 1.48523 * 103.22816 * 37.41506 * 14 13 11 16 16 C 1.46903 * 110.99942 * 200.27931 * 15 14 13 17 17 C 1.50699 * 109.47108 * 287.39532 * 16 15 14 18 18 O 1.21293 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00081 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00348 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99592 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00244 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47028 * 89.99943 * 24 22 20 26 26 H 1.48491 * 109.46818 * 209.99868 * 24 22 20 27 27 H 1.48500 * 109.47075 * 330.00103 * 24 22 20 28 28 C 1.47902 * 105.82237 * 320.79273 * 15 14 13 29 29 C 1.47439 * 111.00045 * 120.84708 * 2 1 3 30 30 H 1.08997 * 109.46916 * 299.15463 * 1 2 3 31 31 H 1.08998 * 109.47467 * 59.15419 * 1 2 3 32 32 H 1.09001 * 109.46967 * 179.15488 * 1 2 3 33 33 H 1.08996 * 110.37823 * 265.19398 * 3 2 1 34 34 H 1.09001 * 110.37314 * 27.42672 * 3 2 1 35 35 H 1.08995 * 110.98807 * 81.01940 * 4 3 2 36 36 H 1.08997 * 110.99076 * 204.80412 * 4 3 2 37 37 H 1.09002 * 109.47120 * 300.00873 * 7 5 4 38 38 H 1.09003 * 109.47528 * 60.01138 * 7 5 4 39 39 H 0.97006 * 119.99954 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.72992 * 337.48625 * 13 11 10 41 41 H 1.09004 * 110.72168 * 100.76810 * 13 11 10 42 42 H 1.09007 * 110.66556 * 278.97686 * 14 13 11 43 43 H 1.09002 * 110.66705 * 155.85282 * 14 13 11 44 44 H 1.08993 * 109.47067 * 47.39716 * 16 15 14 45 45 H 1.08998 * 109.46945 * 167.39850 * 16 15 14 46 46 H 0.97003 * 119.99963 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99984 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.91718 * 265.97837 * 28 15 14 49 49 H 1.09002 * 110.08351 * 144.77623 * 28 15 14 50 50 H 1.09002 * 109.88998 * 356.14887 * 29 2 1 51 51 H 1.09003 * 109.88733 * 117.17548 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2788 1.9328 6 1 2.3783 0.7705 2.7421 7 6 4.1585 -0.4405 2.4667 8 6 3.7490 -1.4245 3.5321 9 8 2.5800 -1.5394 3.8343 10 7 4.6815 -2.1774 4.1484 11 6 4.2833 -3.1344 5.1837 12 1 3.2984 -3.5445 4.9603 13 6 4.2810 -2.4533 6.5716 14 6 4.8538 -3.5546 7.4988 15 7 5.8913 -4.2025 6.6564 16 6 6.2120 -5.5460 7.1565 17 6 7.0085 -5.4309 8.4305 18 8 7.2817 -4.3372 8.8782 19 7 7.4164 -6.5431 9.0731 20 6 8.1406 -6.4385 10.2325 21 1 8.3846 -5.4645 10.6306 22 6 8.5616 -7.5852 10.8946 23 7 9.2562 -7.4848 12.0057 24 14 8.1402 -9.2696 10.2056 25 1 9.2154 -9.7090 9.2803 26 1 8.0173 -10.2435 11.3197 27 1 6.8530 -9.1951 9.4688 28 6 5.3215 -4.2665 5.2930 29 6 1.9974 -0.7058 1.1817 30 1 -0.3633 0.5006 0.8974 31 1 -0.3634 0.5269 -0.8823 32 1 -0.3633 -1.0276 -0.0152 33 1 2.2147 1.7039 -1.0182 34 1 1.2880 2.0595 0.4707 35 1 4.1302 0.9282 0.2243 36 1 3.5498 2.2721 1.2635 37 1 4.6496 -0.9716 1.6513 38 1 4.8473 0.2897 2.8917 39 1 5.6164 -2.0857 3.9064 40 1 4.9265 -1.5750 6.5714 41 1 3.2666 -2.1876 6.8692 42 1 4.0778 -4.2698 7.7716 43 1 5.3017 -3.1132 8.3892 44 1 5.2885 -6.0904 7.3532 45 1 6.7974 -6.0817 6.4092 46 1 7.1970 -7.4178 8.7157 47 1 9.5498 -8.2853 12.4682 48 1 4.8373 -5.2306 5.1378 49 1 6.1075 -4.1223 4.5517 50 1 1.1756 -1.0121 1.8289 51 1 2.5674 -1.5801 0.8673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481708203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:14 Heat of formation + Delta-G solvation = -53.744270 kcal Electronic energy + Delta-G solvation = -29022.653098 eV Core-core repulsion = 24956.964542 eV Total energy + Delta-G solvation = -4065.688555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49458 -39.43048 -38.67752 -37.61429 -34.56064 -33.86357 -33.68789 -31.73229 -31.20167 -30.25444 -28.71563 -27.59909 -26.57466 -25.23612 -24.00441 -21.64608 -21.45043 -21.24055 -20.68915 -20.21402 -19.37335 -18.34468 -17.37689 -16.81329 -16.42901 -16.02874 -15.74672 -15.48586 -15.34321 -14.83892 -14.67466 -14.38664 -14.37720 -13.87155 -13.71971 -13.44992 -13.37528 -13.11863 -13.07000 -12.68499 -12.58730 -12.30831 -12.14143 -11.99250 -11.95352 -11.75794 -11.71524 -11.62808 -11.54304 -11.25531 -11.16114 -11.04238 -11.01187 -10.80928 -10.60317 -9.99366 -9.97504 -9.56280 -9.25447 -8.69366 -8.62305 -8.18930 -8.11110 -6.31332 -3.82721 2.42577 2.92072 3.01628 3.06043 3.14406 3.66256 3.73568 3.93268 4.09804 4.11958 4.24693 4.38164 4.45116 4.63151 4.70747 4.81503 4.86041 4.94939 5.02654 5.05586 5.07599 5.10541 5.21215 5.23573 5.28202 5.30309 5.33228 5.36910 5.49124 5.51018 5.55405 5.61221 5.63599 5.65838 5.69912 5.74235 5.89162 5.91728 5.93447 6.08952 6.31241 6.37363 6.58228 6.68280 6.99734 7.03479 7.29960 7.58037 8.01718 8.14083 8.60161 8.95210 9.42304 9.83577 10.81844 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.001647 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.442942 B =16994.894137 C =17250.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.040 3.960 4 C -0.127 4.127 5 C -0.092 4.092 6 H 0.083 0.917 7 C -0.131 4.131 8 C 0.512 3.488 9 O -0.541 6.541 10 N -0.720 5.720 11 C 0.136 3.864 12 H 0.094 0.906 13 C -0.131 4.131 14 C 0.040 3.960 15 N -0.490 5.490 16 C 0.033 3.967 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.028 3.972 29 C 0.051 3.949 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.403 0.597 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.102 0.898 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.065 0.935 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.990 12.568 -24.943 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.112 4.112 6 H 0.101 0.899 7 C -0.171 4.171 8 C 0.299 3.701 9 O -0.418 6.418 10 N -0.372 5.372 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.170 4.170 14 C -0.088 4.088 15 N -0.214 5.214 16 C -0.099 4.099 17 C 0.240 3.760 18 O -0.439 6.439 19 N -0.232 5.232 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.101 4.101 29 C -0.076 4.076 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.238 0.762 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.900 13.139 -24.682 31.226 hybrid contribution -0.748 -1.662 0.285 1.845 sum -14.648 11.477 -24.398 30.684 Atomic orbital electron populations 1.22533 0.87726 1.02157 1.00459 1.63591 1.08010 1.14222 1.40408 1.23047 0.95556 0.89696 1.00441 1.22844 0.97880 0.99175 0.96578 1.22161 0.95305 0.96021 0.97668 0.89871 1.21688 0.99418 0.98103 0.97924 1.20701 0.85879 0.81267 0.82257 1.90694 1.18179 1.67717 1.65198 1.46156 1.10687 1.40681 1.39696 1.21823 0.98538 0.88936 0.87633 0.88783 1.22922 1.01413 0.99028 0.93674 1.23303 0.92280 0.95488 0.97721 1.64483 1.38375 1.17990 1.00548 1.22113 0.99583 0.90515 0.97676 1.19580 0.85020 0.85117 0.86315 1.90550 1.59190 1.26314 1.67893 1.42205 1.50504 1.06308 1.24213 1.19423 1.28465 0.96989 0.98409 0.86291 1.25031 0.97021 0.98113 0.95986 1.69622 1.36444 1.29756 1.16375 0.86675 0.78799 0.84512 0.79403 1.19626 1.20204 1.19572 1.23154 0.96619 0.97113 0.93231 1.22861 0.98531 0.96667 0.89560 0.95416 0.91535 0.91355 0.90216 0.93567 0.90337 0.90599 0.88475 0.88499 0.76175 0.90257 0.90770 0.94001 0.88003 0.92963 0.89192 0.79769 0.91636 0.92854 0.89761 0.91644 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.07 0.55 0.69 16 2 N -0.54 -4.50 5.44 -239.51 -1.30 -5.81 16 3 C 0.04 0.27 6.73 -2.29 -0.02 0.25 16 4 C -0.13 -0.73 6.54 -24.45 -0.16 -0.89 16 5 C -0.09 -0.68 2.56 -88.66 -0.23 -0.91 16 6 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 7 C -0.13 -0.83 5.10 -27.89 -0.14 -0.97 16 8 C 0.51 4.89 7.62 -10.99 -0.08 4.80 16 9 O -0.54 -7.10 14.51 5.55 0.08 -7.02 16 10 N -0.72 -6.32 5.06 -52.49 -0.27 -6.59 16 11 C 0.14 1.46 3.34 -66.57 -0.22 1.24 16 12 H 0.09 1.09 7.56 -51.93 -0.39 0.69 16 13 C -0.13 -1.61 6.78 -24.87 -0.17 -1.78 16 14 C 0.04 0.59 5.93 -1.90 -0.01 0.58 16 15 N -0.49 -7.42 4.91 -231.90 -1.14 -8.56 16 16 C 0.03 0.54 5.19 -4.98 -0.03 0.51 16 17 C 0.45 10.16 7.61 -10.99 -0.08 10.08 16 18 O -0.56 -14.72 14.64 5.55 0.08 -14.64 16 19 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 24 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C 0.03 0.31 6.43 -2.76 -0.02 0.29 16 29 C 0.05 0.45 5.48 -2.84 -0.02 0.44 16 30 H 0.03 0.20 8.10 -51.93 -0.42 -0.22 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.30 7.78 -51.93 -0.40 -0.11 16 35 H 0.08 0.41 8.05 -51.93 -0.42 0.00 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.47 8.06 -51.93 -0.42 0.06 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.71 8.35 -40.82 -0.34 2.36 16 40 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.60 7.81 -51.92 -0.41 0.19 16 43 H 0.10 1.83 7.10 -51.93 -0.37 1.46 16 44 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 45 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 46 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.05 0.54 7.77 -51.93 -0.40 0.14 16 49 H 0.08 0.82 7.65 -51.93 -0.40 0.43 16 50 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 51 H 0.07 0.67 7.76 -51.93 -0.40 0.27 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -34.23 401.61 -10.09 -44.32 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.73 Total: 9.97 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.87 Total: 6.66 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -1.99 Total: -59.88 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.16 Total: -21.67 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.23 -10.09 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.422 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds