Wall clock time and date at job start Tue Mar 31 2020 22:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47843 * 110.99640 * 2 1 4 4 C 1.54916 * 104.79337 * 146.36598 * 3 2 1 5 5 C 1.55398 * 101.74107 * 323.02060 * 4 3 2 6 6 H 1.09005 * 110.67856 * 277.17709 * 5 4 3 7 7 C 1.52992 * 110.84620 * 153.86232 * 5 4 3 8 8 C 1.50700 * 109.47249 * 180.02562 * 7 5 4 9 9 O 1.21284 * 119.99934 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00217 * 179.97438 * 8 7 5 11 11 C 1.46503 * 120.00089 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.27239 * 32.91106 * 11 10 8 13 13 C 1.54599 * 110.30687 * 270.71689 * 11 10 8 14 14 C 1.54939 * 102.91939 * 219.12747 * 13 11 10 15 15 N 1.48523 * 103.22816 * 37.41506 * 14 13 11 16 16 C 1.46903 * 110.99942 * 200.27931 * 15 14 13 17 17 C 1.50699 * 109.47108 * 287.39532 * 16 15 14 18 18 O 1.21293 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00081 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00348 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99592 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00244 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47028 * 89.99943 * 24 22 20 26 26 H 1.48491 * 109.46818 * 209.99868 * 24 22 20 27 27 H 1.48500 * 109.47075 * 330.00103 * 24 22 20 28 28 C 1.47902 * 105.82237 * 320.79273 * 15 14 13 29 29 C 1.47439 * 111.00045 * 120.84708 * 2 1 3 30 30 H 1.08997 * 109.46916 * 299.15463 * 1 2 3 31 31 H 1.08998 * 109.47467 * 59.15419 * 1 2 3 32 32 H 1.09001 * 109.46967 * 179.15488 * 1 2 3 33 33 H 1.08996 * 110.37823 * 265.19398 * 3 2 1 34 34 H 1.09001 * 110.37314 * 27.42672 * 3 2 1 35 35 H 1.08995 * 110.98807 * 81.01940 * 4 3 2 36 36 H 1.08997 * 110.99076 * 204.80412 * 4 3 2 37 37 H 1.09002 * 109.47120 * 300.00873 * 7 5 4 38 38 H 1.09003 * 109.47528 * 60.01138 * 7 5 4 39 39 H 0.97006 * 119.99954 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.72992 * 337.48625 * 13 11 10 41 41 H 1.09004 * 110.72168 * 100.76810 * 13 11 10 42 42 H 1.09007 * 110.66556 * 278.97686 * 14 13 11 43 43 H 1.09002 * 110.66705 * 155.85282 * 14 13 11 44 44 H 1.08993 * 109.47067 * 47.39716 * 16 15 14 45 45 H 1.08998 * 109.46945 * 167.39850 * 16 15 14 46 46 H 0.97003 * 119.99963 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99984 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.91718 * 265.97837 * 28 15 14 49 49 H 1.09002 * 110.08351 * 144.77623 * 28 15 14 50 50 H 1.09002 * 109.88998 * 356.14887 * 29 2 1 51 51 H 1.09003 * 109.88733 * 117.17548 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2788 1.9328 6 1 2.3783 0.7705 2.7421 7 6 4.1585 -0.4405 2.4667 8 6 3.7490 -1.4245 3.5321 9 8 2.5800 -1.5394 3.8343 10 7 4.6815 -2.1774 4.1484 11 6 4.2833 -3.1344 5.1837 12 1 3.2984 -3.5445 4.9603 13 6 4.2810 -2.4533 6.5716 14 6 4.8538 -3.5546 7.4988 15 7 5.8913 -4.2025 6.6564 16 6 6.2120 -5.5460 7.1565 17 6 7.0085 -5.4309 8.4305 18 8 7.2817 -4.3372 8.8782 19 7 7.4164 -6.5431 9.0731 20 6 8.1406 -6.4385 10.2325 21 1 8.3846 -5.4645 10.6306 22 6 8.5616 -7.5852 10.8946 23 7 9.2562 -7.4848 12.0057 24 14 8.1402 -9.2696 10.2056 25 1 9.2154 -9.7090 9.2803 26 1 8.0173 -10.2435 11.3197 27 1 6.8530 -9.1951 9.4688 28 6 5.3215 -4.2665 5.2930 29 6 1.9974 -0.7058 1.1817 30 1 -0.3633 0.5006 0.8974 31 1 -0.3634 0.5269 -0.8823 32 1 -0.3633 -1.0276 -0.0152 33 1 2.2147 1.7039 -1.0182 34 1 1.2880 2.0595 0.4707 35 1 4.1302 0.9282 0.2243 36 1 3.5498 2.2721 1.2635 37 1 4.6496 -0.9716 1.6513 38 1 4.8473 0.2897 2.8917 39 1 5.6164 -2.0857 3.9064 40 1 4.9265 -1.5750 6.5714 41 1 3.2666 -2.1876 6.8692 42 1 4.0778 -4.2698 7.7716 43 1 5.3017 -3.1132 8.3892 44 1 5.2885 -6.0904 7.3532 45 1 6.7974 -6.0817 6.4092 46 1 7.1970 -7.4178 8.7157 47 1 9.5498 -8.2853 12.4682 48 1 4.8373 -5.2306 5.1378 49 1 6.1075 -4.1223 4.5517 50 1 1.1756 -1.0121 1.8289 51 1 2.5674 -1.5801 0.8673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481708203.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:13 Heat of formation + Delta-G solvation = -82.691535 kcal Electronic energy + Delta-G solvation = -29023.908345 eV Core-core repulsion = 24956.964542 eV Total energy + Delta-G solvation = -4066.943803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30070 -40.55445 -39.73037 -38.87936 -36.03297 -35.32619 -34.29146 -33.74529 -32.30429 -30.86619 -29.65436 -28.57576 -27.74107 -26.02992 -25.55931 -22.56720 -22.27477 -21.98159 -21.52900 -21.24039 -20.85680 -20.21835 -18.18166 -17.76539 -17.47076 -17.11652 -16.92962 -16.47422 -16.29030 -16.17794 -15.95324 -15.48444 -15.11166 -15.00562 -14.85549 -14.56521 -14.39780 -14.27599 -14.08357 -13.97687 -13.66996 -13.38537 -13.33542 -13.04003 -12.82764 -12.70157 -12.64932 -12.50683 -12.41138 -12.26681 -12.19948 -12.10291 -11.97490 -11.86779 -11.72155 -11.58340 -11.48072 -10.77353 -10.42587 -10.22796 -10.03275 -9.33952 -9.31032 -8.40181 -6.00868 1.30590 1.36302 1.44964 1.70166 1.98382 2.19866 2.23845 2.66464 3.09629 3.15285 3.24550 3.51149 3.59054 3.70546 3.74589 3.88897 4.03342 4.09689 4.20080 4.27223 4.36087 4.38969 4.39350 4.40804 4.46758 4.48316 4.53474 4.56203 4.68086 4.70089 4.79220 4.83722 4.86693 4.91502 4.94681 5.00506 5.04056 5.10867 5.13141 5.16447 5.37940 5.53534 5.55844 5.85042 5.91589 5.99357 6.02081 6.09032 6.61066 6.62249 6.90242 7.32010 7.41798 7.99769 8.77563 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.037704 B = 0.001647 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.442942 B =16994.894137 C =17250.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.035 3.965 4 C -0.118 4.118 5 C -0.091 4.091 6 H 0.063 0.937 7 C -0.123 4.123 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.711 5.711 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.123 4.123 14 C 0.040 3.960 15 N -0.513 5.513 16 C 0.044 3.956 17 C 0.452 3.548 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.231 1.231 28 C 0.034 3.966 29 C 0.055 3.945 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.416 0.584 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.039 0.961 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 11.034 -28.661 33.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.274 5.274 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.111 4.111 6 H 0.082 0.918 7 C -0.162 4.162 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.364 5.364 11 C 0.038 3.962 12 H 0.108 0.892 13 C -0.162 4.162 14 C -0.088 4.088 15 N -0.237 5.237 16 C -0.087 4.087 17 C 0.240 3.760 18 O -0.491 6.491 19 N -0.236 5.236 20 C -0.456 4.456 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.155 1.155 28 C -0.094 4.094 29 C -0.073 4.073 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.143 0.857 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.122 0.878 50 H 0.058 0.942 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.415 11.622 -28.443 33.940 hybrid contribution -0.589 -1.020 1.483 1.894 sum -15.005 10.602 -26.960 32.625 Atomic orbital electron populations 1.22543 0.87461 1.02111 1.00761 1.63624 1.08453 1.15285 1.40035 1.23151 0.96025 0.88755 1.01257 1.22833 0.97637 0.99312 0.95767 1.22111 0.95383 0.96107 0.97467 0.91834 1.21708 0.99231 0.97789 0.97512 1.21289 0.85270 0.81253 0.82402 1.90690 1.19951 1.68910 1.66524 1.46069 1.11378 1.40059 1.38887 1.21616 0.98485 0.89078 0.86974 0.89214 1.22814 1.00910 0.98046 0.94438 1.23158 0.92259 0.96421 0.96952 1.64390 1.39352 1.17597 1.02403 1.22047 1.00050 0.91883 0.94712 1.20891 0.83719 0.83884 0.87540 1.90538 1.60636 1.28326 1.69563 1.42031 1.50579 1.07788 1.23160 1.18992 1.30798 0.94997 1.00857 0.92782 1.26109 0.96002 1.03433 0.95850 1.69810 1.37814 1.31698 1.18337 0.85362 0.80556 0.76541 0.79029 1.18052 1.20191 1.15477 1.23204 0.97204 0.98083 0.90883 1.22775 0.97962 0.97095 0.89492 0.95988 0.90279 0.91680 0.89225 0.93707 0.89141 0.89230 0.86180 0.86299 0.74657 0.90975 0.90818 0.93292 0.92266 0.90125 0.85702 0.77534 0.91212 0.90769 0.87780 0.94211 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 127.69 1.16 1.45 16 2 N -0.55 -8.69 5.44 -911.68 -4.96 -13.65 16 3 C 0.04 0.41 6.73 86.78 0.58 1.00 16 4 C -0.12 -1.07 6.54 32.07 0.21 -0.86 16 5 C -0.09 -1.22 2.56 -9.52 -0.02 -1.24 16 6 H 0.06 1.11 8.05 -2.38 -0.02 1.09 16 7 C -0.12 -1.23 5.10 29.85 0.15 -1.08 16 8 C 0.51 8.84 7.62 87.66 0.67 9.51 16 9 O -0.58 -15.00 14.51 -3.04 -0.04 -15.05 16 10 N -0.71 -10.75 5.06 -438.36 -2.22 -12.96 16 11 C 0.14 2.79 3.34 45.87 0.15 2.94 16 12 H 0.09 1.89 7.56 -2.39 -0.02 1.87 16 13 C -0.12 -2.95 6.78 31.80 0.22 -2.74 16 14 C 0.04 1.19 5.93 86.65 0.51 1.71 16 15 N -0.51 -14.52 4.91 -887.59 -4.35 -18.88 16 16 C 0.04 1.31 5.19 85.56 0.44 1.75 16 17 C 0.45 20.16 7.61 87.66 0.67 20.83 16 18 O -0.61 -33.44 14.64 -3.07 -0.04 -33.48 16 19 N -0.59 -27.72 5.09 -306.98 -1.56 -29.29 16 20 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 24 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 28 C 0.03 0.63 6.43 86.45 0.56 1.19 16 29 C 0.05 0.93 5.48 86.65 0.47 1.41 16 30 H 0.02 0.33 8.10 -2.39 -0.02 0.31 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.53 7.78 -2.39 -0.02 0.51 16 35 H 0.09 0.64 8.05 -2.39 -0.02 0.62 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.12 0.72 8.06 -2.39 -0.02 0.70 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.42 4.23 8.35 -92.70 -0.77 3.45 16 40 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 41 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 42 H 0.05 1.36 7.81 -2.38 -0.02 1.34 16 43 H 0.06 2.26 7.10 -2.39 -0.02 2.24 16 44 H 0.08 1.98 7.83 -2.39 -0.02 1.96 16 45 H 0.13 2.88 8.08 -2.39 -0.02 2.86 16 46 H 0.39 14.94 5.76 -92.71 -0.53 14.40 16 47 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.07 1.13 7.77 -2.39 -0.02 1.12 16 49 H 0.10 1.56 7.65 -2.39 -0.02 1.54 16 50 H 0.04 0.87 7.11 -2.39 -0.02 0.85 16 51 H 0.07 1.20 7.76 -2.39 -0.02 1.19 16 Total: -1.00 -82.04 401.61 -4.31 -86.35 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.43 Total: 35.53 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 7.10 Total: 17.18 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -12.79 Total: -130.95 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.09 Total: -48.53 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -82.04 -4.31 -86.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708203.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.658 kcal (2) G-P(sol) polarization free energy of solvation -82.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds