Wall clock time and date at job start Tue Mar 31 2020 22:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48532 * 110.99806 * 2 1 4 4 C 1.54936 * 103.22823 * 200.27797 * 3 2 1 5 5 C 1.54596 * 102.92383 * 37.41119 * 4 3 2 6 6 H 1.09006 * 110.39274 * 97.00003 * 5 4 3 7 7 C 1.52997 * 110.31379 * 219.13021 * 5 4 3 8 8 C 1.50692 * 109.47158 * 182.16813 * 7 5 4 9 9 O 1.21281 * 120.00293 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.46502 * 120.00068 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.62594 * 31.90696 * 11 10 8 13 13 C 1.55422 * 110.69830 * 268.62809 * 11 10 8 14 14 C 1.54908 * 101.52379 * 205.97476 * 13 11 10 15 15 N 1.47846 * 104.89238 * 37.06612 * 14 13 11 16 16 C 1.46900 * 111.00020 * 213.57993 * 15 14 13 17 17 C 1.50691 * 109.47462 * 290.12787 * 16 15 14 18 18 O 1.21297 * 119.99984 * 359.97438 * 17 16 15 19 19 N 1.34765 * 120.00337 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00200 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00061 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00139 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47328 * 89.99778 * 24 22 20 26 26 H 1.48506 * 109.47349 * 210.00362 * 24 22 20 27 27 H 1.48500 * 109.47094 * 329.99779 * 24 22 20 28 28 C 1.47448 * 108.56553 * 335.84749 * 15 14 13 29 29 C 1.47895 * 111.00433 * 242.60275 * 2 1 3 30 30 H 1.09007 * 109.47036 * 177.39688 * 1 2 3 31 31 H 1.09000 * 109.47439 * 297.39386 * 1 2 3 32 32 H 1.09005 * 109.47301 * 57.40060 * 1 2 3 33 33 H 1.08997 * 110.66866 * 318.70916 * 3 2 1 34 34 H 1.08997 * 110.67188 * 81.67633 * 3 2 1 35 35 H 1.08999 * 110.72397 * 279.05164 * 4 3 2 36 36 H 1.09001 * 110.73006 * 155.77110 * 4 3 2 37 37 H 1.09004 * 109.46915 * 62.16412 * 7 5 4 38 38 H 1.09004 * 109.46784 * 302.16526 * 7 5 4 39 39 H 0.96999 * 120.00085 * 0.02562 * 10 8 7 40 40 H 1.08998 * 111.10859 * 87.90629 * 13 11 10 41 41 H 1.08998 * 111.00401 * 323.99747 * 13 11 10 42 42 H 1.09002 * 110.37460 * 278.18013 * 14 13 11 43 43 H 1.08999 * 110.37548 * 155.95084 * 14 13 11 44 44 H 1.09011 * 109.46590 * 50.12909 * 16 15 14 45 45 H 1.09004 * 109.47038 * 170.12020 * 16 15 14 46 46 H 0.97003 * 120.00380 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00150 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.88737 * 120.39623 * 28 15 14 49 49 H 1.08997 * 109.88833 * 241.42257 * 28 15 14 50 50 H 1.08999 * 109.91750 * 26.48610 * 29 2 1 51 51 H 1.09006 * 109.91877 * 265.19985 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 -0.5227 5 6 3.2983 0.1054 -1.5930 6 1 3.2142 0.5471 -2.5860 7 6 4.4896 -0.8531 -1.5381 8 6 4.3502 -1.8902 -2.6224 9 8 3.3921 -1.8656 -3.3656 10 7 5.2903 -2.8453 -2.7663 11 6 5.1545 -3.8539 -3.8201 12 1 4.6467 -3.4354 -4.6891 13 6 4.4015 -5.1054 -3.2888 14 6 4.9450 -6.2140 -4.2245 15 7 6.3661 -5.8671 -4.4390 16 6 6.8021 -6.2452 -5.7899 17 6 6.8653 -7.7471 -5.8954 18 8 6.5759 -8.4350 -4.9392 19 7 7.2442 -8.3260 -7.0519 20 6 7.3021 -9.6925 -7.1478 21 1 7.0437 -10.3050 -6.2966 22 6 7.6923 -10.2894 -8.3404 23 7 8.0052 -9.5442 -9.3765 24 14 7.7705 -12.1511 -8.4712 25 1 6.4570 -12.6708 -8.9291 26 1 8.8222 -12.5351 -9.4467 27 1 8.0946 -12.7275 -7.1416 28 6 6.5350 -4.4195 -4.2150 29 6 1.9990 -0.6353 -1.2258 30 1 -0.3633 -1.0267 -0.0467 31 1 -0.3634 0.4728 0.9124 32 1 -0.3634 0.5537 -0.8658 33 1 1.4236 2.0204 -0.6730 34 1 2.0012 1.7988 1.0091 35 1 4.1114 0.8838 0.2788 36 1 3.8122 2.1352 -0.9716 37 1 4.5156 -1.3451 -0.5658 38 1 5.4132 -0.2936 -1.6871 39 1 6.0564 -2.8652 -2.1717 40 1 3.3233 -4.9925 -3.4026 41 1 4.6638 -5.3077 -2.2504 42 1 4.4059 -6.2090 -5.1718 43 1 4.8606 -7.1896 -3.7458 44 1 6.0928 -5.8589 -6.5220 45 1 7.7892 -5.8254 -5.9838 46 1 7.4759 -7.7760 -7.8166 47 1 8.2780 -9.9608 -10.2089 48 1 7.2495 -4.2499 -3.4095 49 1 6.8866 -3.9414 -5.1292 50 1 1.2758 -0.5404 -2.0358 51 1 2.2122 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481708204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:18 Heat of formation + Delta-G solvation = -60.772569 kcal Electronic energy + Delta-G solvation = -29013.817271 eV Core-core repulsion = 24947.823946 eV Total energy + Delta-G solvation = -4065.993325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.47859 -39.37417 -38.58951 -37.45114 -34.52148 -33.80255 -33.71864 -31.39270 -30.95075 -30.20558 -28.65781 -27.53340 -26.41782 -25.20931 -24.13745 -21.72577 -21.51545 -21.04873 -20.74515 -20.09383 -19.19453 -17.87030 -17.33012 -16.85430 -16.43709 -16.00439 -15.67762 -15.49778 -15.20271 -14.63711 -14.52502 -14.44995 -14.25556 -13.80059 -13.77728 -13.48583 -13.36573 -13.02650 -12.98571 -12.85385 -12.42100 -12.23411 -11.92610 -11.84005 -11.78302 -11.70238 -11.58853 -11.50292 -11.46461 -11.16138 -11.10874 -10.99534 -10.95888 -10.72493 -10.37891 -10.20134 -9.98400 -9.48064 -9.19917 -8.80429 -8.45424 -7.96185 -7.89267 -6.39867 -3.80537 2.44160 2.92033 3.19086 3.27570 3.33577 3.69026 3.92851 4.02175 4.16653 4.21795 4.26633 4.42095 4.51577 4.64184 4.79394 4.86252 4.95618 4.97101 5.03307 5.04959 5.13089 5.18470 5.22875 5.27003 5.33926 5.37705 5.38962 5.40819 5.50721 5.53005 5.61158 5.61879 5.74191 5.77785 5.81069 5.86223 5.89723 5.96967 6.12230 6.29927 6.35146 6.47088 6.51702 6.64398 7.19885 7.20246 7.31116 7.56948 8.03102 8.08258 8.64051 9.20298 9.56716 10.08796 10.78003 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.463065 B =17269.839277 C =17583.429609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.032 3.968 4 C -0.120 4.120 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.720 5.720 11 C 0.122 3.878 12 H 0.096 0.904 13 C -0.138 4.138 14 C 0.053 3.947 15 N -0.501 5.501 16 C 0.039 3.961 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.037 3.963 29 C 0.049 3.951 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.402 0.598 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 24.100 15.723 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.250 5.250 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.101 4.101 6 H 0.101 0.899 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.416 6.416 10 N -0.372 5.372 11 C 0.016 3.984 12 H 0.114 0.886 13 C -0.178 4.178 14 C -0.075 4.075 15 N -0.225 5.225 16 C -0.092 4.092 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.092 4.092 29 C -0.078 4.078 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.222 23.009 16.436 29.448 hybrid contribution -0.147 0.220 -1.803 1.822 sum -8.369 23.229 14.634 28.701 Atomic orbital electron populations 1.22508 0.87911 1.02189 1.00719 1.64775 1.08168 1.14714 1.37390 1.23244 0.95059 0.90202 1.01043 1.22583 0.96771 0.98263 0.98227 1.21760 0.93690 0.94933 0.99754 0.89884 1.21779 1.00433 0.96310 0.98692 1.20736 0.82288 0.81852 0.85299 1.90712 1.30949 1.74461 1.45452 1.46019 1.26115 1.29785 1.35252 1.22318 0.96990 0.88143 0.90904 0.88624 1.23178 1.00101 0.93996 1.00484 1.23011 0.86489 0.99661 0.98291 1.63282 1.20378 1.12347 1.26528 1.22147 1.01122 0.96683 0.89298 1.19705 0.84459 0.88499 0.84333 1.90510 1.53674 1.64237 1.37628 1.41857 1.59324 1.07620 1.11497 1.19698 1.42531 0.81710 0.98821 0.87932 1.25253 0.97185 1.00493 0.95049 1.69611 1.46026 1.36019 1.02768 0.85858 0.77873 0.82331 0.78228 1.20467 1.20955 1.19426 1.23083 0.95739 0.88795 1.01564 1.22864 0.95443 0.99220 0.90318 0.91249 0.91357 0.95409 0.93784 0.90019 0.90339 0.90813 0.88303 0.88680 0.76371 0.90664 0.90409 0.93736 0.88520 0.93197 0.89338 0.77539 0.91922 0.90172 0.92050 0.93269 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.40 60.06 0.56 0.68 16 2 N -0.53 -4.44 5.55 -238.72 -1.33 -5.76 16 3 C 0.03 0.21 6.56 -1.90 -0.01 0.20 16 4 C -0.12 -0.69 6.61 -24.87 -0.16 -0.85 16 5 C -0.08 -0.61 2.62 -89.26 -0.23 -0.85 16 6 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 7 C -0.13 -0.85 4.90 -27.89 -0.14 -0.99 16 8 C 0.51 5.00 7.34 -10.99 -0.08 4.92 16 9 O -0.54 -7.35 14.72 5.56 0.08 -7.27 16 10 N -0.72 -6.36 5.18 -51.89 -0.27 -6.63 16 11 C 0.12 1.39 3.32 -65.95 -0.22 1.17 16 12 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16 13 C -0.14 -1.75 6.78 -24.44 -0.17 -1.92 16 14 C 0.05 0.85 5.77 -2.30 -0.01 0.84 16 15 N -0.50 -8.16 4.85 -232.68 -1.13 -9.29 16 16 C 0.04 0.69 5.07 -4.98 -0.03 0.67 16 17 C 0.44 10.52 7.58 -10.99 -0.08 10.44 16 18 O -0.58 -15.59 14.67 5.54 0.08 -15.50 16 19 N -0.57 -14.39 5.29 -10.97 -0.06 -14.45 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.04 0.44 6.61 -2.83 -0.02 0.42 16 29 C 0.05 0.45 5.28 -2.76 -0.01 0.44 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.20 8.00 -51.93 -0.42 -0.22 16 33 H 0.04 0.29 7.96 -51.93 -0.41 -0.13 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.41 7.86 -51.93 -0.41 0.00 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.40 2.50 8.37 -40.82 -0.34 2.16 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.73 7.61 -51.93 -0.40 0.33 16 43 H 0.10 1.79 7.41 -51.93 -0.38 1.41 16 44 H 0.05 0.82 7.83 -51.92 -0.41 0.41 16 45 H 0.09 1.41 8.01 -51.93 -0.42 0.99 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.08 0.85 7.72 -51.93 -0.40 0.45 16 49 H 0.06 0.68 7.54 -51.93 -0.39 0.29 16 50 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16 51 H 0.08 0.82 7.28 -51.93 -0.38 0.44 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -33.39 404.57 -10.44 -43.83 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -8.78 Total: 9.59 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.84 Total: 7.17 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -2.06 Total: -60.05 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.16 Total: -22.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.39 -10.44 -43.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.939 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds