Wall clock time and date at job start Tue Mar 31 2020 22:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48532 * 110.99806 * 2 1 4 4 C 1.54936 * 103.22823 * 200.27797 * 3 2 1 5 5 C 1.54596 * 102.92383 * 37.41119 * 4 3 2 6 6 H 1.09006 * 110.39274 * 97.00003 * 5 4 3 7 7 C 1.52997 * 110.31379 * 219.13021 * 5 4 3 8 8 C 1.50692 * 109.47158 * 182.16813 * 7 5 4 9 9 O 1.21281 * 120.00293 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.46502 * 120.00068 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.62594 * 31.90696 * 11 10 8 13 13 C 1.55422 * 110.69830 * 268.62809 * 11 10 8 14 14 C 1.54908 * 101.52379 * 205.97476 * 13 11 10 15 15 N 1.47846 * 104.89238 * 37.06612 * 14 13 11 16 16 C 1.46900 * 111.00020 * 213.57993 * 15 14 13 17 17 C 1.50691 * 109.47462 * 290.12787 * 16 15 14 18 18 O 1.21297 * 119.99984 * 359.97438 * 17 16 15 19 19 N 1.34765 * 120.00337 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00200 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00061 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00139 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00028 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47328 * 89.99778 * 24 22 20 26 26 H 1.48506 * 109.47349 * 210.00362 * 24 22 20 27 27 H 1.48500 * 109.47094 * 329.99779 * 24 22 20 28 28 C 1.47448 * 108.56553 * 335.84749 * 15 14 13 29 29 C 1.47895 * 111.00433 * 242.60275 * 2 1 3 30 30 H 1.09007 * 109.47036 * 177.39688 * 1 2 3 31 31 H 1.09000 * 109.47439 * 297.39386 * 1 2 3 32 32 H 1.09005 * 109.47301 * 57.40060 * 1 2 3 33 33 H 1.08997 * 110.66866 * 318.70916 * 3 2 1 34 34 H 1.08997 * 110.67188 * 81.67633 * 3 2 1 35 35 H 1.08999 * 110.72397 * 279.05164 * 4 3 2 36 36 H 1.09001 * 110.73006 * 155.77110 * 4 3 2 37 37 H 1.09004 * 109.46915 * 62.16412 * 7 5 4 38 38 H 1.09004 * 109.46784 * 302.16526 * 7 5 4 39 39 H 0.96999 * 120.00085 * 0.02562 * 10 8 7 40 40 H 1.08998 * 111.10859 * 87.90629 * 13 11 10 41 41 H 1.08998 * 111.00401 * 323.99747 * 13 11 10 42 42 H 1.09002 * 110.37460 * 278.18013 * 14 13 11 43 43 H 1.08999 * 110.37548 * 155.95084 * 14 13 11 44 44 H 1.09011 * 109.46590 * 50.12909 * 16 15 14 45 45 H 1.09004 * 109.47038 * 170.12020 * 16 15 14 46 46 H 0.97003 * 120.00380 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00150 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.88737 * 120.39623 * 28 15 14 49 49 H 1.08997 * 109.88833 * 241.42257 * 28 15 14 50 50 H 1.08999 * 109.91750 * 26.48610 * 29 2 1 51 51 H 1.09006 * 109.91877 * 265.19985 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 -0.5227 5 6 3.2983 0.1054 -1.5930 6 1 3.2142 0.5471 -2.5860 7 6 4.4896 -0.8531 -1.5381 8 6 4.3502 -1.8902 -2.6224 9 8 3.3921 -1.8656 -3.3656 10 7 5.2903 -2.8453 -2.7663 11 6 5.1545 -3.8539 -3.8201 12 1 4.6467 -3.4354 -4.6891 13 6 4.4015 -5.1054 -3.2888 14 6 4.9450 -6.2140 -4.2245 15 7 6.3661 -5.8671 -4.4390 16 6 6.8021 -6.2452 -5.7899 17 6 6.8653 -7.7471 -5.8954 18 8 6.5759 -8.4350 -4.9392 19 7 7.2442 -8.3260 -7.0519 20 6 7.3021 -9.6925 -7.1478 21 1 7.0437 -10.3050 -6.2966 22 6 7.6923 -10.2894 -8.3404 23 7 8.0052 -9.5442 -9.3765 24 14 7.7705 -12.1511 -8.4712 25 1 6.4570 -12.6708 -8.9291 26 1 8.8222 -12.5351 -9.4467 27 1 8.0946 -12.7275 -7.1416 28 6 6.5350 -4.4195 -4.2150 29 6 1.9990 -0.6353 -1.2258 30 1 -0.3633 -1.0267 -0.0467 31 1 -0.3634 0.4728 0.9124 32 1 -0.3634 0.5537 -0.8658 33 1 1.4236 2.0204 -0.6730 34 1 2.0012 1.7988 1.0091 35 1 4.1114 0.8838 0.2788 36 1 3.8122 2.1352 -0.9716 37 1 4.5156 -1.3451 -0.5658 38 1 5.4132 -0.2936 -1.6871 39 1 6.0564 -2.8652 -2.1717 40 1 3.3233 -4.9925 -3.4026 41 1 4.6638 -5.3077 -2.2504 42 1 4.4059 -6.2090 -5.1718 43 1 4.8606 -7.1896 -3.7458 44 1 6.0928 -5.8589 -6.5220 45 1 7.7892 -5.8254 -5.9838 46 1 7.4759 -7.7760 -7.8166 47 1 8.2780 -9.9608 -10.2089 48 1 7.2495 -4.2499 -3.4095 49 1 6.8866 -3.9414 -5.1292 50 1 1.2758 -0.5404 -2.0358 51 1 2.2122 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481708204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:17 Heat of formation + Delta-G solvation = -87.896582 kcal Electronic energy + Delta-G solvation = -29014.993457 eV Core-core repulsion = 24947.823946 eV Total energy + Delta-G solvation = -4067.169511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31206 -40.52000 -39.66677 -38.85519 -36.00342 -35.33168 -34.33892 -33.29637 -32.21164 -30.85643 -29.67101 -28.49750 -27.69461 -26.13249 -25.63639 -22.62151 -22.27072 -22.07234 -21.60483 -20.99530 -20.75242 -19.88297 -18.18944 -17.80690 -17.47144 -17.13403 -16.85851 -16.40590 -16.34726 -16.07846 -15.88853 -15.57712 -15.35762 -15.13085 -14.78721 -14.46785 -14.37590 -14.06041 -13.97974 -13.73582 -13.61507 -13.43301 -13.30129 -13.00066 -12.81573 -12.70305 -12.64509 -12.41191 -12.40362 -12.32399 -12.24921 -12.12957 -12.11741 -11.87836 -11.72233 -11.51351 -11.48392 -10.80497 -10.33217 -10.03776 -9.99836 -9.44271 -9.26002 -8.45953 -5.94477 1.38038 1.41606 1.54386 1.69299 2.06739 2.14227 2.30210 2.82595 3.10683 3.20630 3.33564 3.56576 3.63622 3.68051 3.69908 3.87517 4.01563 4.06190 4.25172 4.30794 4.34194 4.35974 4.41447 4.43135 4.45825 4.51684 4.54464 4.59712 4.66778 4.68889 4.82849 4.83780 4.88709 4.90955 4.93829 4.98972 5.06976 5.09272 5.10965 5.20056 5.33882 5.41506 5.53309 5.84186 5.91575 5.98070 6.04308 6.09975 6.60838 6.61945 7.14015 7.31849 7.57615 8.13776 8.71516 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.001621 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.463065 B =17269.839277 C =17583.429609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.537 5.537 3 C 0.028 3.972 4 C -0.111 4.111 5 C -0.082 4.082 6 H 0.068 0.932 7 C -0.122 4.122 8 C 0.509 3.491 9 O -0.582 6.582 10 N -0.708 5.708 11 C 0.134 3.866 12 H 0.082 0.918 13 C -0.127 4.127 14 C 0.054 3.946 15 N -0.520 5.520 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.042 3.958 29 C 0.052 3.948 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.418 0.582 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.025 0.975 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 26.021 16.655 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.099 4.099 4 C -0.149 4.149 5 C -0.101 4.101 6 H 0.087 0.913 7 C -0.162 4.162 8 C 0.297 3.703 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.027 3.973 12 H 0.100 0.900 13 C -0.166 4.166 14 C -0.074 4.074 15 N -0.244 5.244 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.086 4.086 29 C -0.076 4.076 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.256 0.744 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.133 0.867 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.096 0.904 50 H 0.044 0.956 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.864 24.968 17.383 31.188 hybrid contribution -0.613 -0.353 -2.050 2.169 sum -7.477 24.615 15.333 29.948 Atomic orbital electron populations 1.22530 0.87628 1.01962 1.01297 1.64782 1.08649 1.15997 1.36692 1.23354 0.95645 0.89107 1.01820 1.22583 0.96327 0.98179 0.97836 1.21741 0.93180 0.95570 0.99658 0.91318 1.21793 1.01182 0.95313 0.97867 1.21377 0.81428 0.82121 0.85351 1.90707 1.32718 1.75524 1.47265 1.45873 1.26618 1.28806 1.34750 1.22005 0.96257 0.87937 0.91106 0.90015 1.23059 0.99923 0.93570 1.00041 1.22857 0.87006 0.99254 0.98275 1.63203 1.20217 1.15512 1.25516 1.22024 1.03163 0.91974 0.90861 1.20782 0.82280 0.91085 0.83025 1.90484 1.54801 1.66052 1.38799 1.41928 1.60067 1.07002 1.12332 1.19658 1.44666 0.83048 0.98852 0.90379 1.26023 0.96165 1.04796 0.94293 1.69670 1.45791 1.37645 1.03085 0.84931 0.78323 0.76971 0.78125 1.19782 1.19483 1.19796 1.23147 0.96321 0.85969 1.03177 1.22765 0.96113 0.98753 0.89983 0.91886 0.89999 0.95625 0.93967 0.88804 0.89061 0.89207 0.86724 0.85560 0.74409 0.91045 0.89723 0.94720 0.91953 0.91498 0.86719 0.77055 0.91348 0.87931 0.90448 0.95609 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.40 127.69 1.20 1.41 16 2 N -0.54 -8.64 5.55 -909.18 -5.05 -13.68 16 3 C 0.03 0.32 6.56 86.65 0.57 0.89 16 4 C -0.11 -0.96 6.61 31.80 0.21 -0.75 16 5 C -0.08 -1.10 2.62 -9.91 -0.03 -1.13 16 6 H 0.07 1.13 8.00 -2.38 -0.02 1.11 16 7 C -0.12 -1.23 4.90 29.84 0.15 -1.08 16 8 C 0.51 9.09 7.34 87.65 0.64 9.74 16 9 O -0.58 -15.79 14.72 -3.03 -0.04 -15.84 16 10 N -0.71 -10.77 5.18 -436.48 -2.26 -13.03 16 11 C 0.13 2.83 3.32 46.27 0.15 2.98 16 12 H 0.08 2.03 7.55 -2.38 -0.02 2.01 16 13 C -0.13 -3.17 6.78 32.08 0.22 -2.95 16 14 C 0.05 1.77 5.77 86.77 0.50 2.27 16 15 N -0.52 -16.43 4.85 -890.07 -4.32 -20.75 16 16 C 0.05 1.77 5.07 85.55 0.43 2.20 16 17 C 0.44 21.21 7.58 87.66 0.66 21.88 16 18 O -0.62 -34.40 14.67 -3.08 -0.05 -34.45 16 19 N -0.58 -29.84 5.29 -306.99 -1.62 -31.46 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.02 13.05 21.67 0.28 -49.74 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 C 0.04 0.89 6.61 86.65 0.57 1.46 16 29 C 0.05 0.96 5.28 86.45 0.46 1.41 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.03 0.37 8.00 -2.38 -0.02 0.35 16 33 H 0.04 0.49 7.96 -2.39 -0.02 0.48 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.59 7.86 -2.39 -0.02 0.57 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.42 3.70 8.37 -92.71 -0.78 2.93 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.03 1.17 7.61 -2.39 -0.02 1.15 16 43 H 0.06 2.44 7.41 -2.39 -0.02 2.42 16 44 H 0.07 2.11 7.83 -2.38 -0.02 2.09 16 45 H 0.11 3.38 8.01 -2.39 -0.02 3.36 16 46 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.10 1.77 7.72 -2.39 -0.02 1.76 16 49 H 0.08 1.46 7.54 -2.39 -0.02 1.44 16 50 H 0.03 0.57 7.73 -2.39 -0.02 0.56 16 51 H 0.06 1.31 7.28 -2.38 -0.02 1.29 16 Total: -1.00 -75.09 404.57 -4.58 -79.67 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.57 Total: 34.10 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 7.02 Total: 19.80 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -12.97 Total: -128.66 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -0.09 Total: -50.29 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.09 -4.58 -79.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481708204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.229 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds