Wall clock time and date at job start Tue Mar 31 2020 22:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47843 * 110.99753 * 2 1
4 4 C 1.54913 * 104.79093 * 146.36575 * 3 2 1
5 5 C 1.55137 * 101.65287 * 322.92651 * 4 3 2
6 6 H 1.09001 * 110.85843 * 277.20139 * 5 4 3
7 7 C 1.52997 * 110.70255 * 154.03875 * 5 4 3
8 8 C 1.50704 * 109.47013 * 179.97438 * 7 5 4
9 9 O 1.21281 * 119.99940 * 359.97438 * 8 7 5
10 10 N 1.34778 * 120.00234 * 179.97438 * 8 7 5
11 11 C 1.46493 * 120.00389 * 179.97438 * 10 8 7
12 12 C 1.52999 * 109.47628 * 180.02562 * 11 10 8
13 13 H 1.08994 * 112.74973 * 75.76473 * 12 11 10
14 14 C 1.53513 * 113.53265 * 206.59705 * 12 11 10
15 15 C 1.53511 * 83.57607 * 140.79370 * 14 12 11
16 16 N 1.47476 * 87.93116 * 333.97170 * 15 14 12
17 17 C 1.46902 * 110.99869 * 138.70526 * 16 15 14
18 18 C 1.50702 * 109.47027 * 74.02595 * 17 16 15
19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16
20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16
21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17
22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18
23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18
24 24 N 1.31414 * 120.00152 * 0.27554 * 23 21 20
25 25 Si 1.86803 * 119.99914 * 180.27723 * 23 21 20
26 26 H 1.48504 * 109.47034 * 59.99919 * 25 23 21
27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21
28 28 H 1.48501 * 109.46993 * 299.99991 * 25 23 21
29 29 C 1.47440 * 110.99768 * 120.84541 * 2 1 3
30 30 H 1.08999 * 109.47161 * 299.15599 * 1 2 3
31 31 H 1.09001 * 109.47420 * 59.15787 * 1 2 3
32 32 H 1.08998 * 109.47417 * 179.16140 * 1 2 3
33 33 H 1.08998 * 110.37235 * 265.19078 * 3 2 1
34 34 H 1.08997 * 110.37215 * 27.42751 * 3 2 1
35 35 H 1.08998 * 110.98614 * 204.83933 * 4 3 2
36 36 H 1.09001 * 110.99062 * 81.02278 * 4 3 2
37 37 H 1.09001 * 109.47532 * 59.94669 * 7 5 4
38 38 H 1.08996 * 109.47356 * 299.94336 * 7 5 4
39 39 H 0.97000 * 119.99574 * 359.97438 * 10 8 7
40 40 H 1.08998 * 109.47458 * 59.99826 * 11 10 8
41 41 H 1.09007 * 109.47109 * 299.99981 * 11 10 8
42 42 H 1.09005 * 114.16301 * 254.44486 * 14 12 11
43 43 H 1.08997 * 114.17246 * 26.95037 * 14 12 11
44 44 H 1.09005 * 113.47365 * 219.20290 * 15 14 12
45 45 H 1.09003 * 113.47721 * 88.74429 * 15 14 12
46 46 H 1.09004 * 109.47131 * 314.02839 * 17 16 15
47 47 H 1.08994 * 109.47471 * 194.02589 * 17 16 15
48 48 H 0.97000 * 119.99715 * 359.97438 * 20 18 17
49 49 H 0.96991 * 119.99827 * 179.97438 * 24 23 21
50 50 H 1.09002 * 109.89091 * 117.33649 * 29 2 1
51 51 H 1.08997 * 110.02543 * 356.22075 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3803 0.0000
4 6 3.3048 1.3026 0.8296
5 6 2.9158 0.2821 1.9315
6 1 2.3753 0.7723 2.7411
7 6 4.1570 -0.4339 2.4679
8 6 3.7481 -1.4164 3.5350
9 8 2.5792 -1.5321 3.8370
10 7 4.6814 -2.1664 4.1538
11 6 4.2841 -3.1211 5.1915
12 6 5.5252 -3.8372 5.7280
13 1 6.1156 -3.2125 6.3982
14 6 5.2304 -5.2333 6.2942
15 6 6.5618 -5.5979 5.6227
16 7 6.3263 -4.4914 4.6766
17 6 7.5658 -3.7463 4.4190
18 6 8.4668 -4.5625 3.5284
19 8 8.1111 -5.6571 3.1456
20 7 9.6678 -4.0762 3.1573
21 6 10.4871 -4.8186 2.3468
22 1 10.1701 -5.7929 2.0052
23 6 11.7229 -4.3148 1.9595
24 7 12.1084 -3.1291 2.3746
25 14 12.8360 -5.3231 0.8487
26 1 12.1405 -5.5936 -0.4352
27 1 14.0873 -4.5680 0.5850
28 1 13.1655 -6.6093 1.5139
29 6 1.9974 -0.7058 1.1818
30 1 -0.3633 0.5007 0.8974
31 1 -0.3634 0.5269 -0.8823
32 1 -0.3634 -1.0275 -0.0150
33 1 2.2147 1.7038 -1.0182
34 1 1.2881 2.0595 0.4707
35 1 3.5495 2.2719 1.2640
36 1 4.1302 0.9281 0.2242
37 1 4.8442 0.2984 2.8918
38 1 4.6496 -0.9660 1.6543
39 1 5.6163 -2.0741 3.9120
40 1 3.5966 -3.8531 4.7678
41 1 3.7919 -2.5889 6.0056
42 1 5.2502 -5.2866 7.3828
43 1 4.3583 -5.7179 5.8555
44 1 6.5556 -6.5809 5.1516
45 1 7.4289 -5.4431 6.2650
46 1 8.0725 -3.5463 5.3631
47 1 7.3273 -2.8030 3.9278
48 1 9.9520 -3.2007 3.4632
49 1 12.9711 -2.7776 2.1045
50 1 2.5697 -1.5785 0.8674
51 1 1.1771 -1.0142 1.8299
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001483695090.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:49
Heat of formation + Delta-G solvation = -32.324687 kcal
Electronic energy + Delta-G solvation = -29641.347863 eV
Core-core repulsion = 25576.588131 eV
Total energy + Delta-G solvation = -4064.759733 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.58778 -39.87562 -38.60846 -37.77794 -34.55138 -33.95516 -33.50127 -31.44550
-30.77555 -30.23696 -28.66175 -27.05660 -25.86912 -25.11437 -23.79522 -22.98172
-21.26386 -20.95617 -20.14101 -19.60465 -19.32246 -17.96522 -17.22712 -16.54997
-16.29234 -16.12830 -15.73129 -15.33186 -15.24920 -14.94176 -14.60121 -14.30277
-14.12298 -13.91403 -13.80187 -13.58670 -13.51841 -13.20144 -12.85798 -12.71462
-12.39218 -12.08470 -11.88266 -11.78058 -11.68176 -11.54650 -11.53887 -11.45322
-11.34445 -11.08851 -10.96619 -10.86006 -10.84989 -10.53217 -10.47559 -10.25790
-9.78475 -9.54353 -9.04762 -8.81418 -8.49651 -8.32121 -8.02029 -6.46856
-3.87755 2.64798 3.11744 3.16802 3.22980 3.27282 3.81169 3.84907
3.93993 4.17576 4.32555 4.41347 4.47181 4.64602 4.73405 4.80714
4.92098 4.98742 5.04939 5.13808 5.17017 5.22012 5.24245 5.29428
5.35123 5.36349 5.44246 5.46928 5.50313 5.56108 5.59969 5.66045
5.68129 5.69882 5.77708 5.84950 5.85982 5.95337 6.01455 6.14355
6.16697 6.21570 6.39807 6.54863 6.77401 6.87754 7.13972 7.48911
7.50340 7.99798 8.21598 8.55373 9.12741 9.47634 9.99282 10.70720
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.009415 B = 0.002624 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2973.294620 B =10668.041386 C =12855.521895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.538 5.538
3 C 0.041 3.959
4 C -0.128 4.128
5 C -0.090 4.090
6 H 0.081 0.919
7 C -0.134 4.134
8 C 0.513 3.487
9 O -0.547 6.547
10 N -0.722 5.722
11 C 0.142 3.858
12 C 0.003 3.997
13 H 0.082 0.918
14 C -0.136 4.136
15 C 0.013 3.987
16 N -0.436 5.436
17 C 0.008 3.992
18 C 0.443 3.557
19 O -0.576 6.576
20 N -0.563 5.563
21 C -0.300 4.300
22 H 0.102 0.898
23 C 0.023 3.977
24 N -0.902 5.902
25 Si 0.930 3.070
26 H -0.273 1.273
27 H -0.284 1.284
28 H -0.274 1.274
29 C 0.051 3.949
30 H 0.026 0.974
31 H 0.065 0.935
32 H 0.067 0.933
33 H 0.079 0.921
34 H 0.045 0.955
35 H 0.075 0.925
36 H 0.080 0.920
37 H 0.095 0.905
38 H 0.100 0.900
39 H 0.401 0.599
40 H 0.073 0.927
41 H 0.067 0.933
42 H 0.076 0.924
43 H 0.095 0.905
44 H 0.093 0.907
45 H 0.066 0.934
46 H 0.057 0.943
47 H 0.083 0.917
48 H 0.391 0.609
49 H 0.272 0.728
50 H 0.075 0.925
51 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.542 9.713 4.513 19.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.262 5.262
3 C -0.086 4.086
4 C -0.166 4.166
5 C -0.110 4.110
6 H 0.100 0.900
7 C -0.174 4.174
8 C 0.300 3.700
9 O -0.425 6.425
10 N -0.374 5.374
11 C 0.018 3.982
12 C -0.107 4.107
13 H 0.100 0.900
14 C -0.174 4.174
15 C -0.115 4.115
16 N -0.158 5.158
17 C -0.124 4.124
18 C 0.228 3.772
19 O -0.459 6.459
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.120 0.880
23 C -0.178 4.178
24 N -0.543 5.543
25 Si 0.757 3.243
26 H -0.198 1.198
27 H -0.209 1.209
28 H -0.199 1.199
29 C -0.076 4.076
30 H 0.044 0.956
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.098 0.902
34 H 0.063 0.937
35 H 0.093 0.907
36 H 0.099 0.901
37 H 0.113 0.887
38 H 0.118 0.882
39 H 0.237 0.763
40 H 0.091 0.909
41 H 0.085 0.915
42 H 0.094 0.906
43 H 0.114 0.886
44 H 0.111 0.889
45 H 0.084 0.916
46 H 0.075 0.925
47 H 0.101 0.899
48 H 0.224 0.776
49 H 0.082 0.918
50 H 0.093 0.907
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -17.543 8.613 3.285 19.817
hybrid contribution 1.613 0.849 0.999 2.078
sum -15.930 9.461 4.284 19.016
Atomic orbital electron populations
1.22523 0.87865 1.02106 1.00287 1.63586 1.07873 1.14180 1.40548
1.23040 0.95515 0.89649 1.00440 1.22812 0.97985 0.99112 0.96659
1.22100 0.95291 0.96020 0.97547 0.90036 1.21716 0.99372 0.98146
0.98205 1.20664 0.85751 0.81303 0.82323 1.90668 1.18092 1.68482
1.65228 1.46007 1.10897 1.40568 1.39959 1.21289 0.95741 0.91106
0.90106 1.23811 0.96154 0.96456 0.94285 0.90047 1.23194 0.99339
0.94697 1.00185 1.23582 0.95954 0.98611 0.93396 1.68884 1.12778
1.05286 1.28889 1.22540 0.92285 0.97870 0.99681 1.19594 0.83248
0.88281 0.86106 1.90539 1.74487 1.21837 1.59081 1.41858 1.14566
1.19067 1.44504 1.19643 0.96955 1.01856 1.24454 0.87982 1.25257
0.97794 0.96375 0.98410 1.69595 1.22234 1.16968 1.45526 0.85924
0.78820 0.79287 0.80250 1.19823 1.20942 1.19903 1.22874 0.98493
0.96792 0.89483 0.95563 0.91612 0.91372 0.90244 0.93709 0.90673
0.90118 0.88651 0.88178 0.76331 0.90854 0.91450 0.90551 0.88646
0.88868 0.91558 0.92528 0.89903 0.77553 0.91779 0.90657 0.91674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.19 9.12 60.07 0.55 0.74 16
2 N -0.54 -5.82 5.44 -239.52 -1.30 -7.13 16
3 C 0.04 0.37 6.73 -2.30 -0.02 0.35 16
4 C -0.13 -1.07 6.52 -24.59 -0.16 -1.23 16
5 C -0.09 -0.90 2.55 -88.80 -0.23 -1.12 16
6 H 0.08 0.87 8.04 -51.93 -0.42 0.46 16
7 C -0.13 -1.31 5.09 -27.88 -0.14 -1.45 16
8 C 0.51 6.38 7.62 -10.98 -0.08 6.30 16
9 O -0.55 -8.36 14.85 5.56 0.08 -8.28 16
10 N -0.72 -8.52 5.46 -60.30 -0.33 -8.85 16
11 C 0.14 1.64 5.82 -4.05 -0.02 1.62 16
12 C 0.00 0.04 3.25 -71.43 -0.23 -0.20 16
13 H 0.08 0.82 7.77 -51.93 -0.40 0.42 16
14 C -0.14 -1.44 8.00 -26.20 -0.21 -1.65 16
15 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16
16 N -0.44 -6.65 5.63 -237.95 -1.34 -7.99 16
17 C 0.01 0.14 5.07 -4.97 -0.03 0.11 16
18 C 0.44 10.03 7.62 -10.98 -0.08 9.94 16
19 O -0.58 -15.24 15.34 5.55 0.09 -15.15 16
20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.81 16
21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16
22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16
23 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16
24 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16
25 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16
26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
29 C 0.05 0.59 5.49 -2.84 -0.02 0.58 16
30 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.04 0.37 7.78 -51.93 -0.40 -0.03 16
35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16
37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
38 H 0.10 0.97 8.06 -51.93 -0.42 0.55 16
39 H 0.40 4.50 6.22 -40.82 -0.25 4.24 16
40 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16
41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.10 1.01 7.94 -51.93 -0.41 0.59 16
44 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16
45 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16
46 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16
47 H 0.08 1.18 6.32 -51.93 -0.33 0.85 16
48 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16
49 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
50 H 0.08 0.96 7.77 -51.93 -0.40 0.56 16
51 H 0.06 0.84 7.11 -51.93 -0.37 0.47 16
LS Contribution 405.50 15.07 6.11 6.11
Total: -1.00 -32.61 405.50 -10.68 -43.29
By element:
Atomic # 1 Polarization: 21.65 SS G_CDS: -8.67 Total: 12.99 kcal
Atomic # 6 Polarization: 7.29 SS G_CDS: -0.96 Total: 6.33 kcal
Atomic # 7 Polarization: -58.68 SS G_CDS: -2.31 Total: -60.99 kcal
Atomic # 8 Polarization: -23.60 SS G_CDS: 0.17 Total: -23.43 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -32.61 -10.68 -43.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483695090.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.965 kcal
(2) G-P(sol) polarization free energy of solvation -32.611 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds