Wall clock time and date at job start Tue Mar 31 2020 22:13:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47843 * 110.99753 * 2 1
4 4 C 1.54913 * 104.79093 * 146.36575 * 3 2 1
5 5 C 1.55137 * 101.65287 * 322.92651 * 4 3 2
6 6 H 1.09001 * 110.85843 * 277.20139 * 5 4 3
7 7 C 1.52997 * 110.70255 * 154.03875 * 5 4 3
8 8 C 1.50704 * 109.47013 * 179.97438 * 7 5 4
9 9 O 1.21281 * 119.99940 * 359.97438 * 8 7 5
10 10 N 1.34778 * 120.00234 * 179.97438 * 8 7 5
11 11 C 1.46493 * 120.00389 * 179.97438 * 10 8 7
12 12 C 1.52999 * 109.47628 * 180.02562 * 11 10 8
13 13 H 1.08994 * 112.74973 * 75.76473 * 12 11 10
14 14 C 1.53513 * 113.53265 * 206.59705 * 12 11 10
15 15 C 1.53511 * 83.57607 * 140.79370 * 14 12 11
16 16 N 1.47476 * 87.93116 * 333.97170 * 15 14 12
17 17 C 1.46902 * 110.99869 * 138.70526 * 16 15 14
18 18 C 1.50702 * 109.47027 * 74.02595 * 17 16 15
19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16
20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16
21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17
22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18
23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18
24 24 N 1.31414 * 120.00152 * 0.27554 * 23 21 20
25 25 Si 1.86803 * 119.99914 * 180.27723 * 23 21 20
26 26 H 1.48504 * 109.47034 * 59.99919 * 25 23 21
27 27 H 1.48504 * 109.47036 * 180.02562 * 25 23 21
28 28 H 1.48501 * 109.46993 * 299.99991 * 25 23 21
29 29 C 1.47440 * 110.99768 * 120.84541 * 2 1 3
30 30 H 1.08999 * 109.47161 * 299.15599 * 1 2 3
31 31 H 1.09001 * 109.47420 * 59.15787 * 1 2 3
32 32 H 1.08998 * 109.47417 * 179.16140 * 1 2 3
33 33 H 1.08998 * 110.37235 * 265.19078 * 3 2 1
34 34 H 1.08997 * 110.37215 * 27.42751 * 3 2 1
35 35 H 1.08998 * 110.98614 * 204.83933 * 4 3 2
36 36 H 1.09001 * 110.99062 * 81.02278 * 4 3 2
37 37 H 1.09001 * 109.47532 * 59.94669 * 7 5 4
38 38 H 1.08996 * 109.47356 * 299.94336 * 7 5 4
39 39 H 0.97000 * 119.99574 * 359.97438 * 10 8 7
40 40 H 1.08998 * 109.47458 * 59.99826 * 11 10 8
41 41 H 1.09007 * 109.47109 * 299.99981 * 11 10 8
42 42 H 1.09005 * 114.16301 * 254.44486 * 14 12 11
43 43 H 1.08997 * 114.17246 * 26.95037 * 14 12 11
44 44 H 1.09005 * 113.47365 * 219.20290 * 15 14 12
45 45 H 1.09003 * 113.47721 * 88.74429 * 15 14 12
46 46 H 1.09004 * 109.47131 * 314.02839 * 17 16 15
47 47 H 1.08994 * 109.47471 * 194.02589 * 17 16 15
48 48 H 0.97000 * 119.99715 * 359.97438 * 20 18 17
49 49 H 0.96991 * 119.99827 * 179.97438 * 24 23 21
50 50 H 1.09002 * 109.89091 * 117.33649 * 29 2 1
51 51 H 1.08997 * 110.02543 * 356.22075 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3803 0.0000
4 6 3.3048 1.3026 0.8296
5 6 2.9158 0.2821 1.9315
6 1 2.3753 0.7723 2.7411
7 6 4.1570 -0.4339 2.4679
8 6 3.7481 -1.4164 3.5350
9 8 2.5792 -1.5321 3.8370
10 7 4.6814 -2.1664 4.1538
11 6 4.2841 -3.1211 5.1915
12 6 5.5252 -3.8372 5.7280
13 1 6.1156 -3.2125 6.3982
14 6 5.2304 -5.2333 6.2942
15 6 6.5618 -5.5979 5.6227
16 7 6.3263 -4.4914 4.6766
17 6 7.5658 -3.7463 4.4190
18 6 8.4668 -4.5625 3.5284
19 8 8.1111 -5.6571 3.1456
20 7 9.6678 -4.0762 3.1573
21 6 10.4871 -4.8186 2.3468
22 1 10.1701 -5.7929 2.0052
23 6 11.7229 -4.3148 1.9595
24 7 12.1084 -3.1291 2.3746
25 14 12.8360 -5.3231 0.8487
26 1 12.1405 -5.5936 -0.4352
27 1 14.0873 -4.5680 0.5850
28 1 13.1655 -6.6093 1.5139
29 6 1.9974 -0.7058 1.1818
30 1 -0.3633 0.5007 0.8974
31 1 -0.3634 0.5269 -0.8823
32 1 -0.3634 -1.0275 -0.0150
33 1 2.2147 1.7038 -1.0182
34 1 1.2881 2.0595 0.4707
35 1 3.5495 2.2719 1.2640
36 1 4.1302 0.9281 0.2242
37 1 4.8442 0.2984 2.8918
38 1 4.6496 -0.9660 1.6543
39 1 5.6163 -2.0741 3.9120
40 1 3.5966 -3.8531 4.7678
41 1 3.7919 -2.5889 6.0056
42 1 5.2502 -5.2866 7.3828
43 1 4.3583 -5.7179 5.8555
44 1 6.5556 -6.5809 5.1516
45 1 7.4289 -5.4431 6.2650
46 1 8.0725 -3.5463 5.3631
47 1 7.3273 -2.8030 3.9278
48 1 9.9520 -3.2007 3.4632
49 1 12.9711 -2.7776 2.1045
50 1 2.5697 -1.5785 0.8674
51 1 1.1771 -1.0142 1.8299
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483695090.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:48
Heat of formation + Delta-G solvation = -59.075584 kcal
Electronic energy + Delta-G solvation = -29642.507869 eV
Core-core repulsion = 25576.588131 eV
Total energy + Delta-G solvation = -4065.919739 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.67270 -40.84603 -39.67102 -39.35584 -35.97078 -35.50478 -34.31028 -33.33115
-32.08959 -31.04600 -29.59652 -27.92118 -27.54294 -25.90264 -25.35894 -23.95940
-22.03194 -21.84940 -21.09988 -21.03680 -20.53806 -19.91221 -18.15894 -17.79273
-17.35364 -17.27071 -16.87545 -16.52573 -16.26870 -16.18645 -16.10360 -15.60718
-15.37960 -15.16338 -14.94239 -14.63999 -14.37576 -14.22579 -13.97682 -13.78787
-13.63695 -13.52733 -13.09325 -12.91521 -12.78560 -12.68753 -12.53546 -12.45301
-12.38537 -12.28272 -12.14800 -12.12354 -11.91890 -11.78440 -11.62649 -11.58673
-11.47563 -10.77767 -10.33936 -10.02992 -10.00938 -9.75751 -9.30748 -8.46818
-5.94917 1.39000 1.41700 1.51744 1.68846 2.04441 2.20872 2.28970
2.83386 3.08262 3.19519 3.28166 3.54014 3.57752 3.68639 3.80110
3.84862 3.97000 4.10380 4.19265 4.27116 4.34920 4.36133 4.39337
4.41822 4.45105 4.49025 4.53701 4.55027 4.66519 4.67417 4.79161
4.84614 4.86451 4.90788 4.93749 4.97747 5.00538 5.11385 5.13609
5.20505 5.32814 5.36331 5.41281 5.53914 5.92470 5.98064 6.10297
6.10462 6.55339 6.60650 7.13340 7.27036 7.56358 8.12794 8.70148
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.009415 B = 0.002624 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2973.294620 B =10668.041386 C =12855.521895
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.555 5.555
3 C 0.038 3.962
4 C -0.120 4.120
5 C -0.086 4.086
6 H 0.075 0.925
7 C -0.129 4.129
8 C 0.509 3.491
9 O -0.580 6.580
10 N -0.720 5.720
11 C 0.143 3.857
12 C 0.017 3.983
13 H 0.107 0.893
14 C -0.116 4.116
15 C 0.003 3.997
16 N -0.465 5.465
17 C 0.021 3.979
18 C 0.440 3.560
19 O -0.620 6.620
20 N -0.572 5.572
21 C -0.332 4.332
22 H 0.076 0.924
23 C -0.010 4.010
24 N -0.918 5.918
25 Si 0.988 3.012
26 H -0.274 1.274
27 H -0.270 1.270
28 H -0.273 1.273
29 C 0.054 3.946
30 H 0.027 0.973
31 H 0.080 0.920
32 H 0.062 0.938
33 H 0.087 0.913
34 H 0.052 0.948
35 H 0.095 0.905
36 H 0.080 0.920
37 H 0.122 0.878
38 H 0.102 0.898
39 H 0.405 0.595
40 H 0.054 0.946
41 H 0.081 0.919
42 H 0.108 0.892
43 H 0.093 0.907
44 H 0.060 0.940
45 H 0.071 0.929
46 H 0.083 0.917
47 H 0.108 0.892
48 H 0.397 0.603
49 H 0.278 0.722
50 H 0.056 0.944
51 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.215 11.571 5.310 20.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.279 5.279
3 C -0.089 4.089
4 C -0.158 4.158
5 C -0.106 4.106
6 H 0.093 0.907
7 C -0.169 4.169
8 C 0.297 3.703
9 O -0.460 6.460
10 N -0.371 5.371
11 C 0.019 3.981
12 C -0.093 4.093
13 H 0.125 0.875
14 C -0.155 4.155
15 C -0.126 4.126
16 N -0.189 5.189
17 C -0.110 4.110
18 C 0.228 3.772
19 O -0.505 6.505
20 N -0.210 5.210
21 C -0.462 4.462
22 H 0.094 0.906
23 C -0.210 4.210
24 N -0.559 5.559
25 Si 0.812 3.188
26 H -0.199 1.199
27 H -0.194 1.194
28 H -0.198 1.198
29 C -0.073 4.073
30 H 0.045 0.955
31 H 0.098 0.902
32 H 0.081 0.919
33 H 0.106 0.894
34 H 0.071 0.929
35 H 0.114 0.886
36 H 0.099 0.901
37 H 0.140 0.860
38 H 0.120 0.880
39 H 0.241 0.759
40 H 0.073 0.927
41 H 0.099 0.901
42 H 0.126 0.874
43 H 0.112 0.888
44 H 0.079 0.921
45 H 0.090 0.910
46 H 0.101 0.899
47 H 0.126 0.874
48 H 0.231 0.769
49 H 0.087 0.913
50 H 0.075 0.925
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -17.206 10.496 4.097 20.566
hybrid contribution 1.438 0.224 0.752 1.638
sum -15.768 10.720 4.849 19.674
Atomic orbital electron populations
1.22539 0.87131 1.02074 1.00995 1.63578 1.08778 1.15457 1.40083
1.23133 0.95909 0.88684 1.01169 1.22806 0.97630 0.99514 0.95863
1.22051 0.94988 0.95931 0.97625 0.90686 1.21741 0.99674 0.98073
0.97420 1.21138 0.85300 0.81432 0.82471 1.90657 1.19442 1.69548
1.66355 1.46025 1.11006 1.40251 1.39850 1.21284 0.95630 0.90851
0.90344 1.23833 0.95348 0.96946 0.93141 0.87524 1.23134 0.96949
0.93549 1.01818 1.23611 0.98405 0.96939 0.93598 1.68874 1.12579
1.06332 1.31083 1.22441 0.91744 0.97419 0.99421 1.20725 0.83002
0.88078 0.85433 1.90512 1.75330 1.24095 1.60610 1.41910 1.15157
1.19172 1.44735 1.19564 0.98460 1.01730 1.26451 0.90647 1.25959
0.98424 0.97369 0.99225 1.69644 1.22719 1.17629 1.45881 0.85062
0.77405 0.78027 0.78310 1.19891 1.19401 1.19839 1.22744 0.98018
0.96914 0.89665 0.95471 0.90162 0.91903 0.89448 0.92944 0.88610
0.90104 0.85972 0.88024 0.75871 0.92721 0.90097 0.87365 0.88850
0.92130 0.91048 0.89940 0.87430 0.76909 0.91274 0.92527 0.93658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.38 9.12 127.69 1.16 1.55 16
2 N -0.55 -11.80 5.44 -911.69 -4.96 -16.76 16
3 C 0.04 0.62 6.73 86.78 0.58 1.21 16
4 C -0.12 -1.78 6.52 31.98 0.21 -1.57 16
5 C -0.09 -1.63 2.55 -9.61 -0.02 -1.66 16
6 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16
7 C -0.13 -2.32 5.09 29.85 0.15 -2.17 16
8 C 0.51 12.18 7.62 87.66 0.67 12.85 16
9 O -0.58 -17.68 14.85 -3.03 -0.05 -17.73 16
10 N -0.72 -15.79 5.46 -463.06 -2.53 -18.32 16
11 C 0.14 3.06 5.82 86.38 0.50 3.56 16
12 C 0.02 0.34 3.25 42.19 0.14 0.47 16
13 H 0.11 1.69 7.77 -2.39 -0.02 1.67 16
14 C -0.12 -2.22 8.00 30.94 0.25 -1.97 16
15 C 0.00 0.10 6.71 83.58 0.56 0.66 16
16 N -0.47 -13.66 5.63 -906.72 -5.10 -18.76 16
17 C 0.02 0.66 5.07 85.56 0.43 1.10 16
18 C 0.44 20.08 7.62 87.66 0.67 20.74 16
19 O -0.62 -33.79 15.34 -3.07 -0.05 -33.84 16
20 N -0.57 -28.20 5.29 -306.97 -1.62 -29.82 16
21 C -0.33 -18.49 9.68 84.04 0.81 -17.67 16
22 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16
23 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16
24 N -0.92 -48.10 13.05 21.67 0.28 -47.81 16
25 Si 0.99 42.29 29.55 68.60 2.03 44.31 16
26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16
28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
29 C 0.05 1.28 5.49 86.65 0.48 1.76 16
30 H 0.03 0.48 8.10 -2.39 -0.02 0.46 16
31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.05 0.78 7.78 -2.39 -0.02 0.76 16
35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
36 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16
37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.10 1.84 8.06 -2.39 -0.02 1.82 16
39 H 0.41 8.17 6.22 -92.71 -0.58 7.60 16
40 H 0.05 1.39 7.88 -2.39 -0.02 1.37 16
41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16
42 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16
43 H 0.09 1.84 7.94 -2.39 -0.02 1.82 16
44 H 0.06 2.05 8.13 -2.38 -0.02 2.03 16
45 H 0.07 1.89 7.70 -2.39 -0.02 1.87 16
46 H 0.08 2.15 7.56 -2.38 -0.02 2.13 16
47 H 0.11 2.78 6.32 -2.39 -0.02 2.77 16
48 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16
49 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16
50 H 0.06 1.50 7.77 -2.39 -0.02 1.49 16
51 H 0.04 1.22 7.11 -2.39 -0.02 1.20 16
Total: -1.00 -72.82 405.50 -5.32 -78.14
By element:
Atomic # 1 Polarization: 42.16 SS G_CDS: -0.37 Total: 41.79 kcal
Atomic # 6 Polarization: 11.75 SS G_CDS: 7.06 Total: 18.80 kcal
Atomic # 7 Polarization: -117.54 SS G_CDS: -13.94 Total: -131.48 kcal
Atomic # 8 Polarization: -51.47 SS G_CDS: -0.09 Total: -51.56 kcal
Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal
Total: -72.82 -5.32 -78.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483695090.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.061 kcal
(2) G-P(sol) polarization free energy of solvation -72.819 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.758 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds