Wall clock time and date at job start Tue Mar 31 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 H 1.08999 * 110.72080 * 263.59761 * 5 4 3 7 7 C 1.53000 * 110.72505 * 140.31365 * 5 4 3 8 8 C 1.50706 * 109.46968 * 174.99986 * 7 5 4 9 9 O 1.21277 * 119.99578 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99775 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99864 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47057 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.74339 * 284.22707 * 12 11 10 14 14 C 1.53514 * 113.47619 * 153.38058 * 12 11 10 15 15 C 1.53512 * 83.57534 * 219.20981 * 14 12 11 16 16 N 1.47479 * 87.93460 * 26.02322 * 15 14 12 17 17 C 1.46905 * 111.00188 * 221.29931 * 16 15 14 18 18 C 1.50697 * 109.46929 * 285.96869 * 17 16 15 19 19 O 1.21296 * 120.00211 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99882 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00296 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99683 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00201 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99844 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99936 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46792 * 90.00217 * 25 23 21 27 27 H 1.48501 * 109.47244 * 210.00053 * 25 23 21 28 28 H 1.48503 * 109.47311 * 330.00484 * 25 23 21 29 29 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 30 30 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 31 31 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 32 32 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 33 33 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 34 34 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 35 35 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 36 36 H 1.08997 * 110.31304 * 242.20852 * 4 3 2 37 37 H 1.09004 * 109.47164 * 294.99901 * 7 5 4 38 38 H 1.08998 * 109.47446 * 55.00102 * 7 5 4 39 39 H 0.97003 * 120.00538 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46946 * 299.99821 * 11 10 8 41 41 H 1.08998 * 109.47016 * 59.99625 * 11 10 8 42 42 H 1.09002 * 114.17001 * 332.85172 * 14 12 11 43 43 H 1.08992 * 114.17193 * 105.55903 * 14 12 11 44 44 H 1.09001 * 113.47393 * 271.25500 * 15 14 12 45 45 H 1.09001 * 113.53226 * 140.80078 * 15 14 12 46 46 H 1.08997 * 109.46840 * 45.97088 * 17 16 15 47 47 H 1.08999 * 109.47046 * 165.96882 * 17 16 15 48 48 H 0.97006 * 120.00094 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99989 * 179.97438 * 24 23 21 50 50 H 1.08998 * 110.51915 * 41.07024 * 29 2 1 51 51 H 1.09009 * 110.83927 * 278.09443 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 1 4.1176 -0.6465 -0.6599 7 6 3.9610 -0.1221 -2.7606 8 6 4.2188 -1.5501 -3.1679 9 8 4.0163 -2.4508 -2.3815 10 7 4.6752 -1.8258 -4.4056 11 6 4.9252 -3.2140 -4.8017 12 6 5.4337 -3.2490 -6.2443 13 1 4.6411 -3.0858 -6.9745 14 6 6.3106 -4.4703 -6.5542 15 6 7.1313 -3.4590 -7.3667 16 7 6.6224 -2.4054 -6.4690 17 6 6.2734 -1.1941 -7.2234 18 6 7.5341 -0.4845 -7.6453 19 8 8.6169 -0.9429 -7.3473 20 7 7.4586 0.6590 -8.3547 21 6 8.6055 1.3044 -8.7390 22 1 9.5695 0.8966 -8.4730 23 6 8.5275 2.4835 -9.4699 24 7 9.6269 3.1024 -9.8378 25 14 6.8601 3.1891 -9.9294 26 1 6.4020 4.1128 -8.8607 27 1 6.9727 3.9314 -11.2106 28 1 5.8799 2.0840 -10.0820 29 6 2.0068 -0.6371 -1.2326 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 -0.3634 0.5119 0.8911 33 1 2.2122 1.6967 1.0212 34 1 1.2744 2.0567 -0.4540 35 1 3.2096 2.0482 -1.6774 36 1 4.1459 1.6528 -0.2044 37 1 3.2114 0.3143 -3.4207 38 1 4.8864 0.4492 -2.8338 39 1 4.8375 -1.1053 -5.0345 40 1 5.6744 -3.6509 -4.1413 41 1 3.9996 -3.7848 -4.7291 42 1 6.8333 -4.8758 -5.6879 43 1 5.8174 -5.2323 -7.1576 44 1 6.7922 -3.3526 -8.3972 45 1 8.2080 -3.6113 -7.2910 46 1 5.6984 -1.4698 -8.1073 47 1 5.6777 -0.5331 -6.5940 48 1 6.5927 1.0250 -8.5939 49 1 9.5725 3.9254 -10.3483 50 1 1.4273 -0.3326 -2.1041 51 1 2.0132 -1.7230 -1.1368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483695094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:53 Heat of formation + Delta-G solvation = -24.886935 kcal Electronic energy + Delta-G solvation = -29610.280399 eV Core-core repulsion = 25545.843192 eV Total energy + Delta-G solvation = -4064.437208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66831 -39.91112 -38.66970 -37.98211 -34.61603 -34.02341 -33.63157 -31.81102 -31.00768 -30.30654 -28.73605 -27.19733 -26.02516 -25.15266 -23.64702 -23.04425 -21.40410 -20.86647 -20.21058 -19.67818 -19.47317 -18.43829 -17.45873 -16.39950 -16.28717 -16.21091 -15.76368 -15.54148 -15.29910 -15.04898 -14.88476 -14.51381 -14.19527 -14.06868 -13.85520 -13.66230 -13.37906 -13.17305 -12.94695 -12.63485 -12.46633 -12.42512 -12.28492 -11.96040 -11.74142 -11.72774 -11.63482 -11.54300 -11.45012 -11.25346 -11.04360 -10.94779 -10.76496 -10.67796 -10.60874 -10.04221 -9.83319 -9.63996 -9.10242 -8.92216 -8.71885 -8.46787 -8.25285 -6.37552 -3.89402 2.59702 2.94669 2.99447 3.04963 3.08800 3.62346 3.73985 3.86129 4.03243 4.27568 4.36040 4.37394 4.59571 4.61642 4.71089 4.74893 4.87368 4.91316 5.05798 5.10265 5.10813 5.17560 5.21296 5.25920 5.27582 5.32165 5.33217 5.41909 5.45863 5.52127 5.54851 5.58897 5.64012 5.69109 5.72166 5.77493 5.83277 5.95739 5.98286 6.08718 6.12130 6.32368 6.46051 6.58326 6.73630 7.02292 7.42557 7.50401 8.06642 8.16630 8.52239 8.88117 9.34665 9.74504 10.75488 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.002690 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.995599 B =10406.055263 C =12640.710625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.130 4.130 5 C -0.073 4.073 6 H 0.094 0.906 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.542 6.542 10 N -0.724 5.724 11 C 0.141 3.859 12 C 0.003 3.997 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.012 3.988 16 N -0.436 5.436 17 C 0.005 3.995 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.879 5.879 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.271 1.271 29 C 0.043 3.957 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.369 0.631 49 H 0.274 0.726 50 H 0.039 0.961 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 -7.165 11.922 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.168 4.168 5 C -0.093 4.093 6 H 0.112 0.888 7 C -0.177 4.177 8 C 0.299 3.701 9 O -0.419 6.419 10 N -0.376 5.376 11 C 0.017 3.983 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.173 4.173 15 C -0.117 4.117 16 N -0.158 5.158 17 C -0.127 4.127 18 C 0.237 3.763 19 O -0.438 6.438 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.196 1.196 29 C -0.085 4.085 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.202 0.798 49 H 0.084 0.916 50 H 0.058 0.942 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.067 -7.939 13.605 23.969 hybrid contribution -2.022 1.603 -2.439 3.550 sum -20.089 -6.337 11.166 23.841 Atomic orbital electron populations 1.22501 0.87995 1.02175 1.00539 1.64780 1.07920 1.14790 1.37337 1.22869 0.95826 0.89977 1.00664 1.22511 0.97886 0.96645 0.99782 1.21795 0.96988 0.95758 0.94721 0.88769 1.21759 1.03802 0.94369 0.97765 1.20630 0.76520 0.91474 0.81480 1.90687 1.51945 1.48136 1.51128 1.46005 1.67186 1.09507 1.14888 1.21303 1.00306 0.82809 0.93863 1.23821 0.94466 0.95668 0.96719 0.90044 1.23194 0.97509 0.95442 1.01200 1.23610 1.02479 0.90410 0.95176 1.68895 1.14305 1.00419 1.32229 1.22582 0.97576 0.94961 0.97593 1.19488 0.89955 0.83121 0.83736 1.90583 1.29048 1.66421 1.57746 1.42214 1.08276 1.22572 1.49936 1.19419 0.87287 1.04898 1.31787 0.86270 1.25044 0.97399 0.96480 0.97223 1.69619 1.26779 1.18036 1.37501 0.86677 0.83613 0.79752 0.79336 1.19572 1.20142 1.19618 1.23380 0.93915 1.00896 0.90281 0.95558 0.91259 0.91408 0.90393 0.93874 0.91129 0.90551 0.89026 0.88155 0.76505 0.90735 0.91365 0.88526 0.90447 0.91518 0.88698 0.92400 0.89806 0.79802 0.91551 0.94240 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.41 60.06 0.57 0.70 16 2 N -0.52 -5.15 5.56 -238.46 -1.33 -6.48 16 3 C 0.03 0.29 6.69 -2.75 -0.02 0.27 16 4 C -0.13 -1.05 6.51 -25.38 -0.17 -1.22 16 5 C -0.07 -0.71 2.62 -88.76 -0.23 -0.94 16 6 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 7 C -0.14 -1.24 5.08 -27.88 -0.14 -1.38 16 8 C 0.51 6.05 7.66 -10.99 -0.08 5.97 16 9 O -0.54 -8.07 14.84 5.56 0.08 -7.98 16 10 N -0.72 -7.96 5.46 -60.29 -0.33 -8.29 16 11 C 0.14 1.54 5.81 -4.04 -0.02 1.51 16 12 C 0.00 0.04 3.25 -71.43 -0.23 -0.20 16 13 H 0.08 0.74 7.77 -51.93 -0.40 0.34 16 14 C -0.14 -1.35 8.00 -26.20 -0.21 -1.56 16 15 C 0.01 0.16 6.71 -7.55 -0.05 0.11 16 16 N -0.44 -6.28 5.63 -237.93 -1.34 -7.62 16 17 C 0.01 0.08 5.07 -4.97 -0.03 0.05 16 18 C 0.45 9.75 7.62 -10.99 -0.08 9.66 16 19 O -0.56 -14.47 15.34 5.54 0.09 -14.38 16 20 N -0.59 -13.43 5.09 -10.96 -0.06 -13.49 16 21 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 22 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.19 13.96 55.50 0.77 -24.41 16 25 Si 0.88 18.67 27.74 -169.99 -4.71 13.96 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 29 C 0.04 0.43 5.48 -1.74 -0.01 0.42 16 30 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.33 7.73 -51.93 -0.40 -0.07 16 35 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.67 7.99 -51.93 -0.42 0.26 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 4.07 6.22 -40.82 -0.25 3.81 16 40 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.97 7.94 -51.93 -0.41 0.55 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 45 H 0.09 1.50 8.13 -51.93 -0.42 1.07 16 46 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 47 H 0.08 1.05 6.33 -51.93 -0.33 0.72 16 48 H 0.37 7.29 5.76 -40.82 -0.24 7.05 16 49 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.04 0.37 7.77 -51.93 -0.40 -0.03 16 51 H 0.09 1.10 7.40 -51.92 -0.38 0.72 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -33.96 402.54 -10.33 -44.29 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.61 Total: 12.46 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.96 Total: 5.89 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -2.28 Total: -60.29 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.17 Total: -22.37 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.96 -10.33 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483695094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.401 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds