Wall clock time and date at job start Tue Mar 31 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00033 * 2 1 4 4 O 1.21281 * 120.00187 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00233 * 359.97438 * 3 2 1 6 6 C 1.52994 * 109.47353 * 180.02562 * 5 3 2 7 7 H 1.09003 * 110.76744 * 303.25098 * 6 5 3 8 8 C 1.55141 * 110.70670 * 180.02562 * 6 5 3 9 9 C 1.54905 * 101.65148 * 205.96272 * 8 6 5 10 10 N 1.47836 * 104.80025 * 37.07000 * 9 8 6 11 11 C 1.46901 * 111.00391 * 213.63693 * 10 9 8 12 12 C 1.47448 * 108.56370 * 335.90470 * 10 9 8 13 13 C 1.46497 * 119.99490 * 180.02562 * 2 1 3 14 14 C 1.53932 * 113.73782 * 38.76847 * 13 2 1 15 15 N 1.48191 * 86.09891 * 221.95287 * 14 13 2 16 16 C 1.46899 * 111.06796 * 137.51989 * 15 14 13 17 17 C 1.50706 * 109.47272 * 90.56885 * 16 15 14 18 18 O 1.21284 * 119.99752 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99852 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99950 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99744 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99842 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47291 * 89.99660 * 24 22 20 26 26 H 1.48502 * 109.46774 * 210.00126 * 24 22 20 27 27 H 1.48498 * 109.46880 * 329.99663 * 24 22 20 28 28 C 1.47959 * 90.80143 * 24.59959 * 15 14 13 29 29 H 1.08999 * 109.47076 * 89.99835 * 1 2 3 30 30 H 1.09001 * 109.47463 * 209.99910 * 1 2 3 31 31 H 1.08995 * 109.47589 * 330.00078 * 1 2 3 32 32 H 1.09007 * 109.46833 * 59.99960 * 5 3 2 33 33 H 1.09006 * 109.47115 * 300.00199 * 5 3 2 34 34 H 1.09000 * 110.99218 * 324.05476 * 8 6 5 35 35 H 1.09004 * 110.99166 * 87.86922 * 8 6 5 36 36 H 1.09002 * 110.37707 * 278.23400 * 9 8 6 37 37 H 1.09009 * 110.37539 * 155.89827 * 9 8 6 38 38 H 1.09002 * 109.47401 * 180.83948 * 11 10 9 39 39 H 1.09001 * 109.46874 * 60.83961 * 11 10 9 40 40 H 1.09004 * 109.46970 * 300.84094 * 11 10 9 41 41 H 1.09001 * 109.88743 * 120.39857 * 12 10 9 42 42 H 1.09003 * 109.88565 * 241.58095 * 12 10 9 43 43 H 1.09002 * 112.93353 * 170.33501 * 13 2 1 44 44 H 1.08993 * 113.76000 * 336.23602 * 14 13 2 45 45 H 1.09005 * 113.76177 * 107.60192 * 14 13 2 46 46 H 1.09004 * 109.47298 * 210.56450 * 16 15 14 47 47 H 1.09001 * 109.47644 * 330.56340 * 16 15 14 48 48 H 0.96999 * 120.00665 * 359.97438 * 19 17 16 49 49 H 0.97003 * 119.99950 * 180.02562 * 23 22 20 50 50 H 1.08994 * 113.75947 * 221.08470 * 28 15 14 51 51 H 1.09002 * 113.76190 * 89.71295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6351 -0.0011 7 1 3.0555 3.5661 0.8513 8 6 1.6331 4.9951 -0.0011 9 6 2.6780 5.9256 -0.6657 10 7 3.3208 5.0914 -1.7032 11 6 4.7367 5.4485 -1.8634 12 6 3.1730 3.6742 -1.3241 13 6 2.1974 -1.2688 -0.0006 14 6 1.5557 -2.3543 -0.8834 15 7 1.8637 -3.2922 0.2218 16 6 0.7406 -4.2068 0.4667 17 6 0.9101 -5.4467 -0.3730 18 8 1.8716 -5.5573 -1.1040 19 7 -0.0074 -6.4321 -0.3125 20 6 0.1465 -7.5599 -1.0768 21 1 1.0027 -7.6584 -1.7277 22 6 -0.7991 -8.5761 -1.0140 23 7 -1.8411 -8.4560 -0.2225 24 14 -0.5890 -10.1130 -2.0549 25 1 0.1856 -11.1250 -1.2928 26 1 -1.9243 -10.6658 -2.3965 27 1 0.1386 -9.7697 -3.3031 28 6 1.8623 -2.1782 1.1954 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 0.7584 2.5302 0.8892 33 1 0.7590 2.5298 -0.8909 34 1 0.7227 4.9409 -0.5981 35 1 1.4123 5.3194 1.0160 36 1 3.4147 6.2540 0.0675 37 1 2.1857 6.7850 -1.1211 38 1 5.1816 4.8300 -2.6429 39 1 5.2621 5.2816 -0.9231 40 1 4.8170 6.4990 -2.1431 41 1 2.6268 3.1378 -2.1000 42 1 4.1554 3.2243 -1.1807 43 1 3.2668 -1.1418 -0.1690 44 1 0.4886 -2.2093 -1.0518 45 1 2.1083 -2.5579 -1.8006 46 1 0.7196 -4.4823 1.5212 47 1 -0.1944 -3.7134 0.2015 48 1 -0.7766 -6.3436 0.2718 49 1 -2.5010 -9.1656 -0.1784 50 1 2.6595 -2.2412 1.9360 51 1 0.8851 -1.9814 1.6364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483886738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:20 Heat of formation + Delta-G solvation = -19.915755 kcal Electronic energy + Delta-G solvation = -29310.534463 eV Core-core repulsion = 25246.312822 eV Total energy + Delta-G solvation = -4064.221641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88502 -39.75511 -38.65215 -37.67272 -35.13814 -33.88708 -33.64917 -31.28994 -30.58627 -29.81578 -27.68965 -27.25227 -26.12987 -25.74961 -25.01980 -23.46027 -21.42457 -21.10286 -19.91956 -19.36156 -18.92748 -17.91466 -17.36105 -16.90788 -16.39661 -16.08632 -15.93841 -15.62728 -15.20542 -14.65042 -14.56405 -14.43201 -14.12444 -13.87686 -13.75920 -13.63511 -13.24522 -13.08799 -13.01204 -12.91417 -12.63949 -12.49382 -12.24601 -12.19018 -11.91409 -11.69499 -11.65944 -11.55074 -11.49420 -11.16040 -11.09344 -11.02185 -10.96624 -10.67864 -10.39127 -10.21136 -9.94109 -9.49717 -8.84987 -8.78085 -8.64808 -8.19744 -7.95736 -6.41465 -3.82068 2.39806 2.67938 3.18163 3.26593 3.32656 3.69868 3.89085 3.93526 4.07864 4.21318 4.25355 4.36545 4.48169 4.52643 4.71856 4.80903 4.87758 4.94919 4.96544 5.03556 5.09166 5.10330 5.14201 5.17763 5.25591 5.28078 5.30946 5.34434 5.38791 5.42616 5.50681 5.55877 5.61521 5.64588 5.68835 5.72046 5.77127 5.87920 5.95953 6.06797 6.22027 6.31898 6.52130 6.62332 6.72499 7.07424 7.17610 7.55599 7.95411 8.06567 8.62608 9.19059 9.54933 10.07504 10.76425 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.001723 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.693462 B =16242.736214 C =16475.749247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.514 3.486 4 O -0.536 6.536 5 C -0.129 4.129 6 C -0.093 4.093 7 H 0.083 0.917 8 C -0.126 4.126 9 C 0.040 3.960 10 N -0.538 5.538 11 C 0.020 3.980 12 C 0.051 3.949 13 C 0.116 3.884 14 C 0.003 3.997 15 N -0.444 5.444 16 C 0.014 3.986 17 C 0.446 3.554 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.013 4.013 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.129 0.871 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.094 0.906 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 28.395 3.785 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.302 3.698 4 O -0.413 6.413 5 C -0.169 4.169 6 C -0.113 4.113 7 H 0.101 0.899 8 C -0.164 4.164 9 C -0.087 4.087 10 N -0.262 5.262 11 C -0.129 4.129 12 C -0.076 4.076 13 C 0.013 3.987 14 C -0.127 4.127 15 N -0.167 5.167 16 C -0.119 4.119 17 C 0.231 3.769 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.143 4.143 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.147 0.853 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.840 27.814 2.774 28.096 hybrid contribution -1.076 -0.669 0.824 1.512 sum 1.763 27.145 3.598 27.439 Atomic orbital electron populations 1.21840 0.79532 1.03373 1.02372 1.47960 1.06923 1.05928 1.73301 1.20728 0.88149 0.85310 0.75594 1.90697 1.13949 1.87335 1.49277 1.21734 0.98972 0.91674 1.04527 1.22144 0.96590 0.93163 0.99369 0.89887 1.22799 0.98544 0.94112 1.00981 1.23046 0.96287 0.96729 0.92662 1.63587 1.14538 1.03768 1.44329 1.22535 0.88227 1.01602 1.00507 1.22872 1.00825 0.88685 0.95256 1.23163 0.98891 0.80622 0.96067 1.24457 1.00107 0.90401 0.97736 1.68374 1.37500 1.08104 1.02722 1.22457 0.92824 0.95457 1.01123 1.19664 0.85336 0.85054 0.86875 1.90530 1.31780 1.80513 1.42839 1.41868 1.22417 1.16193 1.39972 1.19703 1.08697 0.93836 1.20508 0.87954 1.25244 0.95347 0.99574 0.97800 1.69607 1.11795 1.34743 1.38361 0.85861 0.77429 0.81033 0.79994 1.20403 1.20954 1.19442 1.24482 1.01794 0.91187 0.96833 0.92013 0.90806 0.90699 0.88655 0.88455 0.90339 0.90669 0.93595 0.90226 0.91283 0.95426 0.91553 0.90815 0.91540 0.85312 0.90965 0.88424 0.89334 0.92556 0.77594 0.91932 0.88796 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 8.83 59.85 0.53 1.01 16 2 N -0.61 -6.04 3.09 -175.29 -0.54 -6.58 16 3 C 0.51 5.40 7.46 -10.99 -0.08 5.32 16 4 O -0.54 -7.58 14.33 5.56 0.08 -7.50 16 5 C -0.13 -0.88 3.65 -27.88 -0.10 -0.98 16 6 C -0.09 -0.72 2.54 -88.80 -0.23 -0.95 16 7 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 8 C -0.13 -0.75 6.52 -24.59 -0.16 -0.91 16 9 C 0.04 0.28 6.73 -2.30 -0.02 0.26 16 10 N -0.54 -4.77 5.44 -239.52 -1.30 -6.08 16 11 C 0.02 0.16 9.12 60.07 0.55 0.70 16 12 C 0.05 0.49 5.49 -2.84 -0.02 0.47 16 13 C 0.12 1.45 4.39 -69.64 -0.31 1.14 16 14 C 0.00 0.04 7.41 -2.63 -0.02 0.02 16 15 N -0.44 -7.35 5.65 -239.69 -1.35 -8.70 16 16 C 0.01 0.24 5.28 -4.97 -0.03 0.21 16 17 C 0.45 10.62 7.83 -10.98 -0.09 10.53 16 18 O -0.57 -15.96 16.01 5.55 0.09 -15.87 16 19 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C -0.01 -0.16 7.47 -2.76 -0.02 -0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 31 H 0.07 0.33 6.44 -51.93 -0.33 -0.01 16 32 H 0.10 0.46 7.40 -51.92 -0.38 0.08 16 33 H 0.10 0.55 8.03 -51.93 -0.42 0.14 16 34 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.31 7.78 -51.93 -0.40 -0.10 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.03 0.21 8.10 -51.93 -0.42 -0.21 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.75 7.77 -51.93 -0.40 0.34 16 42 H 0.07 0.75 7.11 -51.93 -0.37 0.38 16 43 H 0.13 1.84 7.22 -51.93 -0.37 1.47 16 44 H 0.07 0.93 6.17 -51.93 -0.32 0.60 16 45 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 46 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.06 0.85 7.39 -51.93 -0.38 0.46 16 48 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.07 0.74 6.62 -51.93 -0.34 0.39 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -34.17 402.56 -10.08 -44.25 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.53 Total: 7.87 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.22 Total: 8.65 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -2.53 Total: -59.57 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.17 -10.08 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483886738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.330 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds